Wall clock time and date at job start Mon Mar 30 2020 01:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34232 * 117.00061 * 2 1 4 4 O 1.20825 * 119.99936 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99839 * 179.97438 * 3 2 1 6 6 C 1.53002 * 109.46874 * 180.02562 * 5 3 2 7 7 N 1.46498 * 109.47041 * 179.97438 * 6 5 3 8 8 C 1.37095 * 120.00137 * 263.24446 * 7 6 5 9 9 H 1.07993 * 120.00123 * 188.07960 * 8 7 6 10 10 C 1.38952 * 119.99790 * 8.08021 * 8 7 6 11 11 N 1.31409 * 120.00006 * 26.13337 * 10 8 7 12 12 Si 1.86805 * 119.99908 * 206.13467 * 10 8 7 13 13 H 1.48499 * 109.47287 * 84.98350 * 12 10 8 14 14 H 1.48498 * 109.46934 * 204.98723 * 12 10 8 15 15 H 1.48503 * 109.47063 * 324.98353 * 12 10 8 16 16 C 1.34778 * 120.00060 * 83.24860 * 7 6 5 17 17 O 1.21298 * 119.99892 * 359.97438 * 16 7 6 18 18 C 1.50695 * 120.00166 * 180.02562 * 16 7 6 19 19 C 1.53001 * 109.47228 * 179.97438 * 18 16 7 20 20 C 1.53782 * 113.61293 * 85.85801 * 19 18 16 21 21 C 1.54057 * 86.98554 * 140.02046 * 20 19 18 22 22 C 1.53782 * 113.61386 * 183.46682 * 19 18 16 23 23 H 1.09005 * 109.47062 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47734 * 300.00312 * 1 2 3 25 25 H 1.09004 * 109.46513 * 60.00799 * 1 2 3 26 26 H 1.08993 * 109.47464 * 59.99848 * 5 3 2 27 27 H 1.09002 * 109.47016 * 299.99233 * 5 3 2 28 28 H 1.08997 * 109.47359 * 59.99211 * 6 5 3 29 29 H 1.08996 * 109.47088 * 299.99576 * 6 5 3 30 30 H 0.97007 * 119.99546 * 180.02562 * 11 10 8 31 31 H 1.08998 * 109.47666 * 59.99082 * 18 16 7 32 32 H 1.09008 * 109.46956 * 299.99587 * 18 16 7 33 33 H 1.08999 * 112.84766 * 314.66474 * 19 18 16 34 34 H 1.08994 * 113.61838 * 254.61056 * 20 19 18 35 35 H 1.08999 * 113.61816 * 25.52000 * 20 19 18 36 36 H 1.09005 * 113.61841 * 220.02295 * 21 20 19 37 37 H 1.08997 * 113.61071 * 89.11246 * 21 20 19 38 38 H 1.08999 * 113.61181 * 334.48047 * 22 19 18 39 39 H 1.08997 * 113.61672 * 105.30534 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0002 2.7421 0.0011 7 7 5.4631 2.8187 0.0023 8 6 6.1394 2.9939 1.1819 9 1 7.2030 3.1809 1.1719 10 6 5.4564 2.9309 2.3903 11 7 4.3484 2.2304 2.4830 12 14 6.1132 3.8419 3.8830 13 1 5.6402 5.2492 3.8518 14 1 5.6237 3.1824 5.1202 15 1 7.5979 3.8182 3.8637 16 6 6.1442 2.7171 -1.1563 17 8 5.5459 2.5617 -2.1999 18 6 7.6491 2.7954 -1.1550 19 6 8.1685 2.6523 -2.5871 20 6 8.2096 3.9795 -3.3628 21 6 9.5527 3.5023 -3.9474 22 6 9.7029 2.6342 -2.6869 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3632 0.5137 -0.8901 26 1 3.9564 0.7805 -0.8891 27 1 3.9557 0.7810 0.8909 28 1 3.6100 3.2360 0.8910 29 1 3.6108 3.2363 -0.8889 30 1 3.8714 2.1868 3.3265 31 1 8.0543 1.9919 -0.5400 32 1 7.9626 3.7571 -0.7488 33 1 7.6857 1.8421 -3.1334 34 1 7.4180 4.0758 -4.1058 35 1 8.2994 4.8570 -2.7225 36 1 10.3002 4.2918 -4.0256 37 1 9.4484 2.9243 -4.8657 38 1 10.2002 3.1446 -1.8621 39 1 10.1161 1.6449 -2.8832 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333264444.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:58 Heat of formation + Delta-G solvation = -101.772079 kcal Electronic energy + Delta-G solvation = -21194.620845 eV Core-core repulsion = 17910.359424 eV Total energy + Delta-G solvation = -3284.261421 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.81342 -39.08107 -37.72365 -35.92795 -34.92610 -31.65839 -31.10517 -29.30527 -27.30399 -25.23394 -24.97793 -24.02579 -22.18402 -20.03481 -19.13022 -18.91626 -17.25162 -16.57420 -16.10413 -15.86891 -15.70856 -15.19131 -14.50340 -14.31376 -14.01318 -13.76318 -13.36542 -12.94181 -12.58702 -12.33713 -12.10446 -11.99779 -11.74634 -11.66062 -11.32743 -11.25584 -11.01850 -10.75017 -10.53190 -10.46799 -10.33539 -10.15899 -9.90728 -9.84574 -9.74562 -9.69880 -9.01857 -8.38673 -7.91437 -6.50943 -3.92140 2.97355 3.08507 3.20367 3.20810 3.32349 3.90232 4.04134 4.70314 4.95581 5.01282 5.07399 5.15262 5.32448 5.38891 5.45080 5.57854 5.84270 5.87242 5.99475 6.02875 6.05906 6.12620 6.17179 6.28569 6.37235 6.40124 6.49937 6.54717 6.65872 6.75361 6.96004 6.97897 7.18472 7.28992 7.45689 7.66164 8.33876 8.45875 9.01424 9.48180 9.89275 10.51907 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.013956 B = 0.006453 C = 0.004652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.893037 B = 4338.092072 C = 6016.871439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.367 6.367 3 C 0.476 3.524 4 O -0.520 6.520 5 C -0.109 4.109 6 C 0.153 3.847 7 N -0.445 5.445 8 C -0.339 4.339 9 H 0.103 0.897 10 C 0.039 3.961 11 N -0.860 5.860 12 Si 0.916 3.084 13 H -0.277 1.277 14 H -0.285 1.285 15 H -0.270 1.270 16 C 0.456 3.544 17 O -0.607 6.607 18 C -0.111 4.111 19 C -0.088 4.088 20 C -0.131 4.131 21 C -0.144 4.144 22 C -0.140 4.140 23 H 0.093 0.907 24 H 0.058 0.942 25 H 0.056 0.944 26 H 0.082 0.918 27 H 0.135 0.865 28 H 0.105 0.895 29 H 0.048 0.952 30 H 0.271 0.729 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.060 0.940 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.713 -1.977 -3.373 4.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.285 6.285 3 C 0.320 3.680 4 O -0.408 6.408 5 C -0.148 4.148 6 C 0.029 3.971 7 N -0.163 5.163 8 C -0.466 4.466 9 H 0.121 0.879 10 C -0.166 4.166 11 N -0.498 5.498 12 Si 0.743 3.257 13 H -0.203 1.203 14 H -0.211 1.211 15 H -0.195 1.195 16 C 0.245 3.755 17 O -0.493 6.493 18 C -0.151 4.151 19 C -0.107 4.107 20 C -0.169 4.169 21 C -0.181 4.181 22 C -0.178 4.178 23 H 0.111 0.889 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.100 0.900 27 H 0.153 0.847 28 H 0.123 0.877 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.111 0.889 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.041 -1.799 -3.703 4.595 hybrid contribution -0.039 0.397 1.049 1.122 sum 2.002 -1.403 -2.654 3.608 Atomic orbital electron populations 1.23107 0.77962 1.02723 1.02045 1.86555 1.22290 1.34839 1.84775 1.24242 0.92591 0.80503 0.70675 1.90576 1.67541 1.36400 1.46291 1.21848 0.84998 1.02387 1.05545 1.20950 0.80843 0.93175 1.02147 1.43823 1.04953 1.61541 1.05941 1.19676 0.94830 1.49297 0.82775 0.87898 1.25143 0.96323 0.96081 0.99005 1.69991 1.18313 1.34416 1.27076 0.86123 0.79203 0.80051 0.80368 1.20260 1.21055 1.19499 1.20197 0.89503 0.82136 0.83648 1.90523 1.70691 1.56200 1.31932 1.21397 0.94152 1.02974 0.96557 1.22271 0.94015 0.98648 0.95744 1.22929 0.96647 0.97600 0.99693 1.22855 0.98150 0.99517 0.97579 1.22987 0.97106 0.99716 0.97960 0.88893 0.92344 0.92481 0.89968 0.84722 0.87718 0.93409 0.91825 0.89993 0.90330 0.88866 0.91616 0.90656 0.92137 0.90684 0.90369 0.92014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.51 10.56 101.05 1.07 1.58 16 2 O -0.37 -6.88 10.57 -39.26 -0.41 -7.29 16 3 C 0.48 10.27 7.96 36.01 0.29 10.55 16 4 O -0.52 -12.17 15.73 -18.75 -0.29 -12.47 16 5 C -0.11 -2.47 5.62 -27.88 -0.16 -2.63 16 6 C 0.15 3.76 3.81 -4.04 -0.02 3.74 16 7 N -0.44 -10.87 2.64 -114.82 -0.30 -11.17 16 8 C -0.34 -8.16 9.25 -14.93 -0.14 -8.30 16 9 H 0.10 2.33 6.47 -52.49 -0.34 1.99 16 10 C 0.04 0.94 4.88 -17.47 -0.09 0.86 16 11 N -0.86 -21.13 8.73 55.50 0.48 -20.64 16 12 Si 0.92 18.83 29.63 -169.99 -5.04 13.80 16 13 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 14 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 15 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 16 C 0.46 10.65 7.58 -10.99 -0.08 10.56 16 17 O -0.61 -15.49 15.48 5.54 0.09 -15.40 16 18 C -0.11 -2.09 3.91 -27.89 -0.11 -2.20 16 19 C -0.09 -1.47 3.11 -89.81 -0.28 -1.75 16 20 C -0.13 -2.03 7.65 -25.77 -0.20 -2.23 16 21 C -0.14 -1.83 8.09 -25.77 -0.21 -2.03 16 22 C -0.14 -1.87 7.64 -25.91 -0.20 -2.07 16 23 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 24 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 25 H 0.06 0.78 8.13 -51.93 -0.42 0.36 16 26 H 0.08 1.85 8.14 -51.93 -0.42 1.42 16 27 H 0.14 3.20 6.41 -51.93 -0.33 2.86 16 28 H 0.10 2.75 5.77 -51.93 -0.30 2.45 16 29 H 0.05 1.22 7.59 -51.93 -0.39 0.83 16 30 H 0.27 6.43 8.31 -40.82 -0.34 6.09 16 31 H 0.08 1.50 8.02 -51.93 -0.42 1.08 16 32 H 0.08 1.42 7.53 -51.92 -0.39 1.03 16 33 H 0.09 1.70 7.73 -51.93 -0.40 1.30 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.07 1.14 7.92 -51.93 -0.41 0.73 16 36 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 323.10 15.07 4.87 4.87 Total: -1.00 -28.10 323.10 -6.65 -34.75 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -5.92 Total: 7.48 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: -0.12 Total: 6.08 kcal Atomic # 7 Polarization: -32.00 SS G_CDS: 0.18 Total: -31.82 kcal Atomic # 8 Polarization: -34.54 SS G_CDS: -0.62 Total: -35.17 kcal Atomic # 14 Polarization: 18.83 SS G_CDS: -5.04 Total: 13.80 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.10 -6.65 -34.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333264444.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.021 kcal (2) G-P(sol) polarization free energy of solvation -28.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds