Wall clock time and date at job start Mon Mar 30 2020 01:20:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34232 * 117.00061 * 2 1 4 4 O 1.20825 * 119.99936 * 359.97438 * 3 2 1 5 5 C 1.50701 * 119.99839 * 179.97438 * 3 2 1 6 6 C 1.53002 * 109.46874 * 180.02562 * 5 3 2 7 7 N 1.46498 * 109.47041 * 179.97438 * 6 5 3 8 8 C 1.37095 * 120.00137 * 263.24446 * 7 6 5 9 9 H 1.07993 * 120.00123 * 188.07960 * 8 7 6 10 10 C 1.38952 * 119.99790 * 8.08021 * 8 7 6 11 11 N 1.31409 * 120.00006 * 26.13337 * 10 8 7 12 12 Si 1.86805 * 119.99908 * 206.13467 * 10 8 7 13 13 H 1.48499 * 109.47287 * 84.98350 * 12 10 8 14 14 H 1.48498 * 109.46934 * 204.98723 * 12 10 8 15 15 H 1.48503 * 109.47063 * 324.98353 * 12 10 8 16 16 C 1.34778 * 120.00060 * 83.24860 * 7 6 5 17 17 O 1.21298 * 119.99892 * 359.97438 * 16 7 6 18 18 C 1.50695 * 120.00166 * 180.02562 * 16 7 6 19 19 C 1.53001 * 109.47228 * 179.97438 * 18 16 7 20 20 C 1.53782 * 113.61293 * 85.85801 * 19 18 16 21 21 C 1.54057 * 86.98554 * 140.02046 * 20 19 18 22 22 C 1.53782 * 113.61386 * 183.46682 * 19 18 16 23 23 H 1.09005 * 109.47062 * 180.02562 * 1 2 3 24 24 H 1.08996 * 109.47734 * 300.00312 * 1 2 3 25 25 H 1.09004 * 109.46513 * 60.00799 * 1 2 3 26 26 H 1.08993 * 109.47464 * 59.99848 * 5 3 2 27 27 H 1.09002 * 109.47016 * 299.99233 * 5 3 2 28 28 H 1.08997 * 109.47359 * 59.99211 * 6 5 3 29 29 H 1.08996 * 109.47088 * 299.99576 * 6 5 3 30 30 H 0.97007 * 119.99546 * 180.02562 * 11 10 8 31 31 H 1.08998 * 109.47666 * 59.99082 * 18 16 7 32 32 H 1.09008 * 109.46956 * 299.99587 * 18 16 7 33 33 H 1.08999 * 112.84766 * 314.66474 * 19 18 16 34 34 H 1.08994 * 113.61838 * 254.61056 * 20 19 18 35 35 H 1.08999 * 113.61816 * 25.52000 * 20 19 18 36 36 H 1.09005 * 113.61841 * 220.02295 * 21 20 19 37 37 H 1.08997 * 113.61071 * 89.11246 * 21 20 19 38 38 H 1.08999 * 113.61181 * 334.48047 * 22 19 18 39 39 H 1.08997 * 113.61672 * 105.30534 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0002 2.7421 0.0011 7 7 5.4631 2.8187 0.0023 8 6 6.1394 2.9939 1.1819 9 1 7.2030 3.1809 1.1719 10 6 5.4564 2.9309 2.3903 11 7 4.3484 2.2304 2.4830 12 14 6.1132 3.8419 3.8830 13 1 5.6402 5.2492 3.8518 14 1 5.6237 3.1824 5.1202 15 1 7.5979 3.8182 3.8637 16 6 6.1442 2.7171 -1.1563 17 8 5.5459 2.5617 -2.1999 18 6 7.6491 2.7954 -1.1550 19 6 8.1685 2.6523 -2.5871 20 6 8.2096 3.9795 -3.3628 21 6 9.5527 3.5023 -3.9474 22 6 9.7029 2.6342 -2.6869 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3632 0.5137 -0.8901 26 1 3.9564 0.7805 -0.8891 27 1 3.9557 0.7810 0.8909 28 1 3.6100 3.2360 0.8910 29 1 3.6108 3.2363 -0.8889 30 1 3.8714 2.1868 3.3265 31 1 8.0543 1.9919 -0.5400 32 1 7.9626 3.7571 -0.7488 33 1 7.6857 1.8421 -3.1334 34 1 7.4180 4.0758 -4.1058 35 1 8.2994 4.8570 -2.7225 36 1 10.3002 4.2918 -4.0256 37 1 9.4484 2.9243 -4.8657 38 1 10.2002 3.1446 -1.8621 39 1 10.1161 1.6449 -2.8832 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333264444.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:58 Heat of formation + Delta-G solvation = -116.235153 kcal Electronic energy + Delta-G solvation = -21195.248011 eV Core-core repulsion = 17910.359424 eV Total energy + Delta-G solvation = -3284.888587 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.50446 -40.69229 -39.15885 -37.57367 -36.79494 -33.53365 -32.89943 -30.82427 -28.65162 -26.81838 -26.36994 -25.60300 -23.66037 -21.72162 -20.94339 -20.16537 -19.00892 -18.28367 -17.85753 -17.47163 -17.36381 -16.54626 -16.18170 -15.96784 -15.63312 -15.17417 -14.93530 -14.51245 -14.24172 -13.85774 -13.73413 -13.34857 -13.22912 -13.18589 -12.94120 -12.71364 -12.67604 -12.26041 -12.16278 -12.07391 -11.86759 -11.75253 -11.52215 -11.34581 -11.09323 -10.96078 -10.87032 -10.24248 -9.81965 -8.34383 -5.81542 1.22981 1.43753 1.52930 1.61156 1.75923 2.11146 2.31897 2.99403 3.14113 3.84637 3.88440 3.95559 4.01607 4.09987 4.23120 4.30592 4.31521 4.44713 4.53317 4.64529 4.68017 4.72826 4.82476 4.92109 4.95818 4.99246 5.12872 5.16793 5.21490 5.26712 5.30017 5.38072 5.52150 5.59081 5.72515 5.80537 6.45599 6.77401 7.14772 7.61936 8.03280 8.68566 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.013956 B = 0.006453 C = 0.004652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.893037 B = 4338.092072 C = 6016.871439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.368 6.368 3 C 0.481 3.519 4 O -0.543 6.543 5 C -0.097 4.097 6 C 0.160 3.840 7 N -0.455 5.455 8 C -0.357 4.357 9 H 0.118 0.882 10 C 0.001 3.999 11 N -0.881 5.881 12 Si 0.982 3.018 13 H -0.283 1.283 14 H -0.287 1.287 15 H -0.255 1.255 16 C 0.443 3.557 17 O -0.636 6.636 18 C -0.101 4.101 19 C -0.100 4.100 20 C -0.139 4.139 21 C -0.129 4.129 22 C -0.126 4.126 23 H 0.137 0.863 24 H 0.058 0.942 25 H 0.061 0.939 26 H 0.079 0.921 27 H 0.126 0.874 28 H 0.087 0.913 29 H 0.027 0.973 30 H 0.271 0.729 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.071 0.929 34 H 0.045 0.955 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.227 -2.177 -2.897 5.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.285 6.285 3 C 0.326 3.674 4 O -0.433 6.433 5 C -0.136 4.136 6 C 0.035 3.965 7 N -0.173 5.173 8 C -0.484 4.484 9 H 0.136 0.864 10 C -0.202 4.202 11 N -0.519 5.519 12 Si 0.806 3.194 13 H -0.209 1.209 14 H -0.212 1.212 15 H -0.179 1.179 16 C 0.234 3.766 17 O -0.525 6.525 18 C -0.140 4.140 19 C -0.119 4.119 20 C -0.177 4.177 21 C -0.166 4.166 22 C -0.163 4.163 23 H 0.155 0.845 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.097 0.903 27 H 0.144 0.856 28 H 0.105 0.895 29 H 0.045 0.955 30 H 0.081 0.919 31 H 0.107 0.893 32 H 0.108 0.892 33 H 0.089 0.911 34 H 0.064 0.936 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.110 0.890 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.565 -2.024 -3.228 5.218 hybrid contribution -0.646 0.399 0.882 1.164 sum 2.920 -1.625 -2.346 4.083 Atomic orbital electron populations 1.23549 0.74983 1.05734 1.02331 1.86513 1.25103 1.32845 1.84009 1.23900 0.92168 0.81056 0.70289 1.90560 1.67909 1.37351 1.47499 1.21575 0.86341 1.00860 1.04818 1.20729 0.81617 0.94084 1.00027 1.44054 1.04793 1.61709 1.06716 1.20048 0.95654 1.49943 0.82740 0.86446 1.25942 0.96644 0.96185 1.01395 1.70081 1.19264 1.34957 1.27600 0.85107 0.79379 0.78022 0.76869 1.20904 1.21241 1.17883 1.21055 0.91461 0.81265 0.82847 1.90492 1.71796 1.57372 1.32855 1.21393 0.90539 1.03678 0.98428 1.22307 0.96721 0.98721 0.94108 1.22984 0.98056 0.97145 0.99488 1.22802 0.96529 0.99782 0.97509 1.22943 0.93908 1.00855 0.98631 0.84543 0.92281 0.92063 0.90276 0.85638 0.89486 0.95488 0.91921 0.89311 0.89238 0.91087 0.93561 0.90383 0.89931 0.89990 0.89049 0.90658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 10.56 113.37 1.20 1.92 16 2 O -0.37 -13.56 10.57 -51.44 -0.54 -14.11 16 3 C 0.48 21.10 7.96 71.24 0.57 21.67 16 4 O -0.54 -25.94 15.73 21.97 0.35 -25.60 16 5 C -0.10 -4.55 5.62 29.85 0.17 -4.38 16 6 C 0.16 8.16 3.81 86.38 0.33 8.49 16 7 N -0.45 -22.71 2.64 -635.55 -1.68 -24.39 16 8 C -0.36 -17.17 9.25 84.04 0.78 -16.40 16 9 H 0.12 5.17 6.47 -2.91 -0.02 5.15 16 10 C 0.00 0.06 4.88 84.93 0.41 0.47 16 11 N -0.88 -43.73 8.73 21.66 0.19 -43.54 16 12 Si 0.98 38.05 29.63 68.60 2.03 40.08 16 13 H -0.28 -11.21 7.11 99.48 0.71 -10.50 16 14 H -0.29 -11.12 7.11 99.48 0.71 -10.41 16 15 H -0.26 -9.21 7.11 99.48 0.71 -8.51 16 16 C 0.44 21.10 7.58 87.66 0.66 21.76 16 17 O -0.64 -33.62 15.48 -3.09 -0.05 -33.66 16 18 C -0.10 -3.75 3.91 29.85 0.12 -3.63 16 19 C -0.10 -3.25 3.11 -10.27 -0.03 -3.28 16 20 C -0.14 -4.19 7.65 31.22 0.24 -3.95 16 21 C -0.13 -2.93 8.09 31.22 0.25 -2.68 16 22 C -0.13 -3.01 7.64 31.12 0.24 -2.77 16 23 H 0.14 2.45 8.14 -2.38 -0.02 2.43 16 24 H 0.06 1.59 8.13 -2.39 -0.02 1.57 16 25 H 0.06 1.60 8.13 -2.38 -0.02 1.58 16 26 H 0.08 3.69 8.14 -2.39 -0.02 3.67 16 27 H 0.13 6.12 6.41 -2.39 -0.02 6.11 16 28 H 0.09 4.74 5.77 -2.39 -0.01 4.73 16 29 H 0.03 1.45 7.59 -2.39 -0.02 1.43 16 30 H 0.27 12.94 8.31 -92.70 -0.77 12.17 16 31 H 0.09 3.15 8.02 -2.39 -0.02 3.14 16 32 H 0.09 3.12 7.53 -2.38 -0.02 3.10 16 33 H 0.07 2.62 7.73 -2.39 -0.02 2.60 16 34 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.08 2.28 7.92 -2.39 -0.02 2.26 16 36 H 0.08 1.56 8.14 -2.38 -0.02 1.54 16 37 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.09 1.97 8.10 -2.39 -0.02 1.96 16 39 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -61.40 323.10 6.26 -55.14 By element: Atomic # 1 Polarization: 27.83 SS G_CDS: 1.04 Total: 28.86 kcal Atomic # 6 Polarization: 12.29 SS G_CDS: 4.93 Total: 17.22 kcal Atomic # 7 Polarization: -66.44 SS G_CDS: -1.49 Total: -67.93 kcal Atomic # 8 Polarization: -73.12 SS G_CDS: -0.25 Total: -73.37 kcal Atomic # 14 Polarization: 38.05 SS G_CDS: 2.03 Total: 40.08 kcal Total: -61.40 6.26 -55.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333264444.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.094 kcal (2) G-P(sol) polarization free energy of solvation -61.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds