Wall clock time and date at job start Mon Mar 30 2020 01:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42905 * 113.99898 * 2 1 4 4 H 1.09008 * 110.01351 * 29.93942 * 3 2 1 5 5 C 1.54265 * 110.03379 * 268.54866 * 3 2 1 6 6 C 1.54891 * 104.19199 * 217.05376 * 5 3 2 7 7 C 1.54881 * 102.91617 * 37.85219 * 6 5 3 8 8 C 1.53868 * 110.07289 * 151.35320 * 3 2 1 9 9 H 1.08999 * 110.03767 * 238.64251 * 8 3 2 10 10 C 1.50695 * 110.03364 * 0.02638 * 8 3 2 11 11 O 1.21282 * 120.00322 * 85.77902 * 10 8 3 12 12 N 1.34782 * 120.00279 * 265.78389 * 10 8 3 13 13 C 1.47061 * 136.05273 * 359.62222 * 12 10 8 14 14 C 1.53236 * 88.08531 * 207.20700 * 13 12 10 15 15 O 1.42898 * 114.01729 * 87.71511 * 14 13 12 16 16 C 1.50695 * 114.32826 * 220.47384 * 14 13 12 17 17 H 1.08001 * 120.00501 * 93.75799 * 16 14 13 18 18 C 1.37883 * 120.00071 * 273.75745 * 16 14 13 19 19 N 1.31510 * 119.99814 * 359.97438 * 18 16 14 20 20 Si 1.86795 * 119.99896 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47429 * 60.00096 * 20 18 16 22 22 H 1.48506 * 109.47077 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47167 * 299.99845 * 20 18 16 24 24 C 1.47066 * 136.05979 * 180.02562 * 12 10 8 25 25 H 1.08999 * 109.46669 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47219 * 299.99485 * 1 2 3 27 27 H 1.08993 * 109.47008 * 59.99750 * 1 2 3 28 28 H 1.09007 * 110.48617 * 98.37599 * 5 3 2 29 29 H 1.09002 * 110.48753 * 335.73605 * 5 3 2 30 30 H 1.09000 * 110.75143 * 156.25651 * 6 5 3 31 31 H 1.08999 * 110.75449 * 279.43973 * 6 5 3 32 32 H 1.08999 * 110.48979 * 80.82122 * 7 6 5 33 33 H 1.08996 * 110.48856 * 203.46723 * 7 6 5 34 34 H 1.08997 * 113.47404 * 321.94221 * 13 12 10 35 35 H 1.09004 * 113.46732 * 92.37964 * 13 12 10 36 36 H 0.96708 * 114.00004 * 86.39197 * 15 14 13 37 37 H 0.97002 * 120.00386 * 179.97438 * 19 18 16 38 38 H 1.08999 * 113.46163 * 267.61912 * 24 12 10 39 39 H 1.08997 * 113.46765 * 38.05584 * 24 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3512 2.0073 0.5112 5 6 2.2587 1.7734 -1.4488 6 6 3.5947 2.5534 -1.3722 7 6 4.4215 1.7251 -0.3578 8 6 3.3837 1.2721 0.6929 9 1 3.3911 1.9570 1.5407 10 6 3.6935 -0.1275 1.1577 11 8 4.2094 -0.9189 0.3971 12 7 3.3973 -0.4999 2.4187 13 6 2.7989 0.1413 3.5992 14 6 3.5988 -0.8333 4.4702 15 8 4.9122 -0.3762 4.7987 16 6 2.8395 -1.3746 5.6540 17 1 2.3138 -2.3147 5.5745 18 6 2.8158 -0.6697 6.8388 19 7 3.4562 0.4748 6.9358 20 14 1.8752 -1.3410 8.3063 21 1 2.4310 -2.6643 8.6873 22 1 2.0057 -0.4022 9.4495 23 1 0.4415 -1.4906 7.9491 24 6 3.5368 -1.7240 3.2218 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.4532 2.4280 -1.7818 29 1 2.3551 0.9162 -2.1153 30 1 4.0859 2.5747 -2.3450 31 1 3.4304 3.5653 -1.0018 32 1 4.8695 0.8601 -0.8468 33 1 5.1907 2.3445 0.1036 34 1 3.0984 1.1814 3.7269 35 1 1.7202 0.0011 3.6692 36 1 4.9481 0.1847 5.5857 37 1 3.4393 0.9710 7.7691 38 1 2.6568 -2.3664 3.1902 39 1 4.4624 -2.2664 3.0292 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337230838.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:54 Heat of formation + Delta-G solvation = -98.277766 kcal Electronic energy + Delta-G solvation = -21795.730389 eV Core-core repulsion = 18511.620492 eV Total energy + Delta-G solvation = -3284.109896 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.96597 -38.63675 -36.98302 -35.52712 -33.91440 -32.16464 -29.87470 -28.23687 -27.95257 -26.05029 -25.17323 -24.97230 -21.38374 -20.78630 -19.60057 -18.15182 -17.46845 -16.87575 -16.09004 -15.76236 -15.17947 -15.11195 -14.63136 -14.35411 -14.17757 -13.83919 -13.65821 -13.06257 -12.64830 -12.53555 -12.24009 -11.90999 -11.52679 -11.40611 -11.37637 -11.23493 -11.06474 -11.03933 -10.95674 -10.67070 -10.56281 -10.44731 -10.21157 -9.51519 -9.47227 -9.03272 -8.73042 -8.31300 -7.69315 -6.38024 -4.48030 3.16775 3.22537 3.25013 3.36147 3.69093 3.88781 4.19729 4.54998 4.64843 4.85121 4.95398 5.18930 5.26325 5.37425 5.38633 5.51928 5.56541 5.63403 5.65661 5.69535 5.77582 5.86178 5.95872 6.02805 6.06116 6.20075 6.31911 6.46259 6.49035 6.59693 6.73509 6.78828 7.16886 7.31010 7.65263 7.84746 8.54846 8.71639 8.99303 9.23298 9.52958 10.68553 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.027369 B = 0.005241 C = 0.004948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.805339 B = 5341.054791 C = 5657.256423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.371 6.371 3 C 0.100 3.900 4 H 0.068 0.932 5 C -0.144 4.144 6 C -0.120 4.120 7 C -0.112 4.112 8 C -0.108 4.108 9 H 0.094 0.906 10 C 0.562 3.438 11 O -0.560 6.560 12 N -0.631 5.631 13 C 0.076 3.924 14 C 0.239 3.761 15 O -0.572 6.572 16 C -0.532 4.532 17 H 0.071 0.929 18 C 0.072 3.928 19 N -0.900 5.900 20 Si 0.909 3.091 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.274 1.274 24 C 0.109 3.891 25 H 0.083 0.917 26 H 0.041 0.959 27 H 0.037 0.963 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.070 0.930 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.393 0.607 37 H 0.274 0.726 38 H 0.082 0.918 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.044 5.715 -10.243 12.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.289 6.289 3 C 0.041 3.959 4 H 0.086 0.914 5 C -0.182 4.182 6 C -0.157 4.157 7 C -0.149 4.149 8 C -0.130 4.130 9 H 0.112 0.888 10 C 0.351 3.649 11 O -0.440 6.440 12 N -0.364 5.364 13 C -0.048 4.048 14 C 0.197 3.803 15 O -0.385 6.385 16 C -0.570 4.570 17 H 0.090 0.910 18 C -0.130 4.130 19 N -0.540 5.540 20 Si 0.736 3.264 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.199 1.199 24 C -0.014 4.014 25 H 0.102 0.898 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.084 0.916 29 H 0.098 0.902 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.106 0.894 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.095 0.905 36 H 0.249 0.751 37 H 0.084 0.916 38 H 0.100 0.900 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.412 5.009 -11.236 13.069 hybrid contribution -1.079 0.426 1.361 1.788 sum -5.491 5.435 -9.875 12.538 Atomic orbital electron populations 1.22756 0.81498 1.02687 0.99531 1.88095 1.19211 1.26788 1.94813 1.22664 0.92983 0.85049 0.95179 0.91410 1.22890 0.97774 1.00437 0.97092 1.22397 0.95404 0.98406 0.99530 1.22384 0.96628 1.00524 0.95411 1.22017 0.95457 0.96131 0.99351 0.88783 1.19333 0.77676 0.88620 0.79230 1.90577 1.45928 1.54323 1.53147 1.49610 1.59910 1.17128 1.09758 1.24061 0.98712 0.99547 0.82471 1.19505 0.81847 0.88970 0.90013 1.86051 1.27907 1.71990 1.52521 1.21412 1.31752 1.07734 0.96103 0.91043 1.25072 0.94766 0.94213 0.98994 1.69257 1.42802 1.14168 1.27819 0.86377 0.80127 0.78993 0.80949 1.19821 1.21005 1.19918 1.23240 1.00558 0.89313 0.88244 0.89804 0.94015 0.94426 0.91552 0.90187 0.91100 0.91405 0.89379 0.91087 0.92176 0.90526 0.75097 0.91584 0.90040 0.91825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.85 101.05 1.10 1.50 16 2 O -0.37 -6.21 8.82 -35.23 -0.31 -6.52 16 3 C 0.10 1.45 3.35 -25.62 -0.09 1.36 16 4 H 0.07 0.86 7.82 -51.92 -0.41 0.45 16 5 C -0.14 -1.73 6.56 -25.07 -0.16 -1.89 16 6 C -0.12 -1.34 6.90 -24.74 -0.17 -1.51 16 7 C -0.11 -1.61 6.34 -24.97 -0.16 -1.77 16 8 C -0.11 -1.81 3.18 -90.55 -0.29 -2.09 16 9 H 0.09 1.50 7.70 -51.93 -0.40 1.10 16 10 C 0.56 12.11 5.82 -10.99 -0.06 12.05 16 11 O -0.56 -13.69 16.52 5.55 0.09 -13.60 16 12 N -0.63 -14.07 3.69 -185.40 -0.68 -14.75 16 13 C 0.08 1.67 7.64 -8.65 -0.07 1.60 16 14 C 0.24 5.85 1.57 -91.40 -0.14 5.71 16 15 O -0.57 -15.03 13.53 -35.23 -0.48 -15.51 16 16 C -0.53 -13.45 8.69 -34.44 -0.30 -13.75 16 17 H 0.07 1.76 7.81 -52.49 -0.41 1.35 16 18 C 0.07 1.79 5.40 -17.82 -0.10 1.69 16 19 N -0.90 -22.82 11.01 55.43 0.61 -22.21 16 20 Si 0.91 19.41 29.54 -169.99 -5.02 14.39 16 21 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 22 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 23 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 24 C 0.11 2.51 8.03 -8.52 -0.07 2.44 16 25 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.04 0.49 8.10 -51.93 -0.42 0.07 16 27 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.08 1.06 8.08 -51.93 -0.42 0.64 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.09 1.47 6.90 -51.93 -0.36 1.11 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.06 1.31 7.94 -51.93 -0.41 0.90 16 35 H 0.08 1.62 8.10 -51.93 -0.42 1.20 16 36 H 0.39 10.35 6.33 45.56 0.29 10.64 16 37 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 38 H 0.08 1.74 8.10 -51.93 -0.42 1.32 16 39 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 LS Contribution 320.95 15.07 4.84 4.84 Total: -1.00 -29.70 320.95 -6.94 -36.64 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -5.47 Total: 11.39 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: -0.51 Total: 5.33 kcal Atomic # 7 Polarization: -36.89 SS G_CDS: -0.07 Total: -36.97 kcal Atomic # 8 Polarization: -34.93 SS G_CDS: -0.70 Total: -35.62 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.02 Total: 14.39 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.70 -6.94 -36.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337230838.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.640 kcal (2) G-P(sol) polarization free energy of solvation -29.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds