Wall clock time and date at job start Mon Mar 30 2020 01:14:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42905 * 113.99898 * 2 1 4 4 H 1.09008 * 110.01351 * 29.93942 * 3 2 1 5 5 C 1.54265 * 110.03379 * 268.54866 * 3 2 1 6 6 C 1.54891 * 104.19199 * 217.05376 * 5 3 2 7 7 C 1.54881 * 102.91617 * 37.85219 * 6 5 3 8 8 C 1.53868 * 110.07289 * 151.35320 * 3 2 1 9 9 H 1.08999 * 110.03767 * 238.64251 * 8 3 2 10 10 C 1.50695 * 110.03364 * 0.02638 * 8 3 2 11 11 O 1.21282 * 120.00322 * 85.77902 * 10 8 3 12 12 N 1.34782 * 120.00279 * 265.78389 * 10 8 3 13 13 C 1.47061 * 136.05273 * 359.62222 * 12 10 8 14 14 C 1.53236 * 88.08531 * 207.20700 * 13 12 10 15 15 O 1.42898 * 114.01729 * 87.71511 * 14 13 12 16 16 C 1.50695 * 114.32826 * 220.47384 * 14 13 12 17 17 H 1.08001 * 120.00501 * 93.75799 * 16 14 13 18 18 C 1.37883 * 120.00071 * 273.75745 * 16 14 13 19 19 N 1.31510 * 119.99814 * 359.97438 * 18 16 14 20 20 Si 1.86795 * 119.99896 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47429 * 60.00096 * 20 18 16 22 22 H 1.48506 * 109.47077 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47167 * 299.99845 * 20 18 16 24 24 C 1.47066 * 136.05979 * 180.02562 * 12 10 8 25 25 H 1.08999 * 109.46669 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47219 * 299.99485 * 1 2 3 27 27 H 1.08993 * 109.47008 * 59.99750 * 1 2 3 28 28 H 1.09007 * 110.48617 * 98.37599 * 5 3 2 29 29 H 1.09002 * 110.48753 * 335.73605 * 5 3 2 30 30 H 1.09000 * 110.75143 * 156.25651 * 6 5 3 31 31 H 1.08999 * 110.75449 * 279.43973 * 6 5 3 32 32 H 1.08999 * 110.48979 * 80.82122 * 7 6 5 33 33 H 1.08996 * 110.48856 * 203.46723 * 7 6 5 34 34 H 1.08997 * 113.47404 * 321.94221 * 13 12 10 35 35 H 1.09004 * 113.46732 * 92.37964 * 13 12 10 36 36 H 0.96708 * 114.00004 * 86.39197 * 15 14 13 37 37 H 0.97002 * 120.00386 * 179.97438 * 19 18 16 38 38 H 1.08999 * 113.46163 * 267.61912 * 24 12 10 39 39 H 1.08997 * 113.46765 * 38.05584 * 24 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3512 2.0073 0.5112 5 6 2.2587 1.7734 -1.4488 6 6 3.5947 2.5534 -1.3722 7 6 4.4215 1.7251 -0.3578 8 6 3.3837 1.2721 0.6929 9 1 3.3911 1.9570 1.5407 10 6 3.6935 -0.1275 1.1577 11 8 4.2094 -0.9189 0.3971 12 7 3.3973 -0.4999 2.4187 13 6 2.7989 0.1413 3.5992 14 6 3.5988 -0.8333 4.4702 15 8 4.9122 -0.3762 4.7987 16 6 2.8395 -1.3746 5.6540 17 1 2.3138 -2.3147 5.5745 18 6 2.8158 -0.6697 6.8388 19 7 3.4562 0.4748 6.9358 20 14 1.8752 -1.3410 8.3063 21 1 2.4310 -2.6643 8.6873 22 1 2.0057 -0.4022 9.4495 23 1 0.4415 -1.4906 7.9491 24 6 3.5368 -1.7240 3.2218 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.4532 2.4280 -1.7818 29 1 2.3551 0.9162 -2.1153 30 1 4.0859 2.5747 -2.3450 31 1 3.4304 3.5653 -1.0018 32 1 4.8695 0.8601 -0.8468 33 1 5.1907 2.3445 0.1036 34 1 3.0984 1.1814 3.7269 35 1 1.7202 0.0011 3.6692 36 1 4.9481 0.1847 5.5857 37 1 3.4393 0.9710 7.7691 38 1 2.6568 -2.3664 3.1902 39 1 4.4624 -2.2664 3.0292 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001337230838.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:53 Heat of formation + Delta-G solvation = -119.499469 kcal Electronic energy + Delta-G solvation = -21796.650631 eV Core-core repulsion = 18511.620492 eV Total energy + Delta-G solvation = -3285.030139 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.52651 -40.12739 -38.57579 -36.70080 -35.85637 -34.12872 -31.34504 -29.57492 -29.21065 -27.25978 -26.90479 -26.69425 -22.88354 -21.75955 -21.23614 -19.81313 -19.24002 -18.37279 -17.47465 -17.27412 -17.00266 -16.35901 -16.04438 -15.89268 -15.76012 -15.14093 -14.86871 -14.73964 -14.32703 -14.12673 -13.73622 -13.41474 -13.38965 -12.81493 -12.76155 -12.50422 -12.45691 -12.32766 -12.22026 -12.17737 -12.01681 -11.81778 -11.53486 -11.32405 -10.85113 -10.60650 -10.54590 -10.21110 -9.52279 -8.27301 -6.44579 1.48508 1.50710 1.58190 1.72740 2.04676 2.41335 2.79187 2.94651 3.46399 3.53739 3.60826 3.80315 4.09634 4.17020 4.24956 4.34785 4.38273 4.43450 4.50402 4.53885 4.56735 4.62482 4.73011 4.79627 4.82899 4.89861 4.91073 4.96833 5.05156 5.14724 5.16994 5.25125 5.42221 5.72436 5.91275 6.27999 6.60780 6.98090 7.25458 7.30976 7.49237 8.78932 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.027369 B = 0.005241 C = 0.004948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.805339 B = 5341.054791 C = 5657.256423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.410 6.410 3 C 0.096 3.904 4 H 0.091 0.909 5 C -0.138 4.138 6 C -0.108 4.108 7 C -0.114 4.114 8 C -0.110 4.110 9 H 0.101 0.899 10 C 0.554 3.446 11 O -0.597 6.597 12 N -0.635 5.635 13 C 0.093 3.907 14 C 0.221 3.779 15 O -0.586 6.586 16 C -0.554 4.554 17 H 0.072 0.928 18 C 0.034 3.966 19 N -0.917 5.917 20 Si 0.971 3.029 21 H -0.275 1.275 22 H -0.281 1.281 23 H -0.266 1.266 24 C 0.106 3.894 25 H 0.083 0.917 26 H 0.048 0.952 27 H 0.062 0.938 28 H 0.098 0.902 29 H 0.062 0.938 30 H 0.086 0.914 31 H 0.093 0.907 32 H 0.058 0.942 33 H 0.081 0.919 34 H 0.061 0.939 35 H 0.087 0.913 36 H 0.389 0.611 37 H 0.277 0.723 38 H 0.095 0.905 39 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.664 7.265 -10.533 14.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.329 6.329 3 C 0.038 3.962 4 H 0.108 0.892 5 C -0.176 4.176 6 C -0.146 4.146 7 C -0.152 4.152 8 C -0.132 4.132 9 H 0.119 0.881 10 C 0.346 3.654 11 O -0.480 6.480 12 N -0.368 5.368 13 C -0.030 4.030 14 C 0.179 3.821 15 O -0.400 6.400 16 C -0.592 4.592 17 H 0.091 0.909 18 C -0.167 4.167 19 N -0.558 5.558 20 Si 0.796 3.204 21 H -0.200 1.200 22 H -0.206 1.206 23 H -0.191 1.191 24 C -0.017 4.017 25 H 0.102 0.898 26 H 0.067 0.933 27 H 0.080 0.920 28 H 0.116 0.884 29 H 0.081 0.919 30 H 0.104 0.896 31 H 0.111 0.889 32 H 0.077 0.923 33 H 0.100 0.900 34 H 0.080 0.920 35 H 0.105 0.895 36 H 0.245 0.755 37 H 0.087 0.913 38 H 0.113 0.887 39 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.042 6.571 -11.538 14.588 hybrid contribution -0.530 -0.101 1.450 1.547 sum -6.572 6.469 -10.088 13.667 Atomic orbital electron populations 1.22917 0.79613 1.03273 1.01024 1.88044 1.21471 1.28291 1.95134 1.22875 0.91734 0.84880 0.96760 0.89155 1.22872 0.99310 1.00410 0.95003 1.22406 0.94154 0.98744 0.99256 1.22413 0.96887 1.00179 0.95717 1.22208 0.97944 0.92616 1.00391 0.88103 1.20292 0.76389 0.90354 0.78378 1.90547 1.47462 1.55985 1.53958 1.49728 1.60119 1.16661 1.10274 1.23828 0.98782 0.98897 0.81489 1.19753 0.81456 0.90274 0.90594 1.86036 1.29410 1.72105 1.52404 1.21612 1.32407 1.08168 0.96965 0.90943 1.25766 0.95411 0.94353 1.01151 1.69315 1.43206 1.14801 1.28504 0.85399 0.79097 0.78090 0.77805 1.20045 1.20598 1.19127 1.23248 1.00412 0.89794 0.88253 0.89835 0.93350 0.91978 0.88361 0.91933 0.89561 0.88859 0.92296 0.90044 0.92035 0.89483 0.75479 0.91263 0.88664 0.93430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 10.85 113.37 1.23 1.87 16 2 O -0.41 -13.31 8.82 -148.98 -1.31 -14.62 16 3 C 0.10 2.58 3.35 31.32 0.10 2.68 16 4 H 0.09 1.99 7.82 -2.38 -0.02 1.97 16 5 C -0.14 -2.92 6.56 31.67 0.21 -2.71 16 6 C -0.11 -2.08 6.90 31.88 0.22 -1.86 16 7 C -0.11 -3.18 6.34 31.74 0.20 -2.97 16 8 C -0.11 -3.58 3.18 -10.75 -0.03 -3.61 16 9 H 0.10 3.08 7.70 -2.39 -0.02 3.06 16 10 C 0.55 24.16 5.82 87.65 0.51 24.67 16 11 O -0.60 -30.09 16.52 -3.03 -0.05 -30.14 16 12 N -0.64 -28.57 3.69 -859.34 -3.17 -31.75 16 13 C 0.09 4.08 7.64 83.09 0.64 4.72 16 14 C 0.22 10.92 1.57 -11.30 -0.02 10.90 16 15 O -0.59 -31.43 13.53 -148.98 -2.02 -33.45 16 16 C -0.55 -27.93 8.69 25.60 0.22 -27.71 16 17 H 0.07 3.55 7.81 -2.91 -0.02 3.52 16 18 C 0.03 1.65 5.40 84.66 0.46 2.11 16 19 N -0.92 -46.13 11.01 21.45 0.24 -45.90 16 20 Si 0.97 39.07 29.54 68.60 2.03 41.10 16 21 H -0.28 -11.10 7.11 99.48 0.71 -10.39 16 22 H -0.28 -11.04 7.11 99.48 0.71 -10.33 16 23 H -0.27 -10.35 7.11 99.48 0.71 -9.64 16 24 C 0.11 4.97 8.03 83.17 0.67 5.64 16 25 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.05 1.03 8.10 -2.39 -0.02 1.01 16 27 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.10 1.47 8.14 -2.38 -0.02 1.45 16 29 H 0.06 1.55 8.08 -2.39 -0.02 1.53 16 30 H 0.09 1.42 8.14 -2.39 -0.02 1.41 16 31 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.06 1.99 6.90 -2.39 -0.02 1.97 16 33 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.06 2.65 7.94 -2.39 -0.02 2.63 16 35 H 0.09 3.61 8.10 -2.38 -0.02 3.59 16 36 H 0.39 20.89 6.33 -74.05 -0.47 20.42 16 37 H 0.28 13.17 8.31 -92.71 -0.77 12.40 16 38 H 0.10 4.13 8.10 -2.39 -0.02 4.11 16 39 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -64.39 320.95 0.69 -63.71 By element: Atomic # 1 Polarization: 36.76 SS G_CDS: 0.57 Total: 37.34 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: 4.40 Total: 13.71 kcal Atomic # 7 Polarization: -74.71 SS G_CDS: -2.94 Total: -77.64 kcal Atomic # 8 Polarization: -74.83 SS G_CDS: -3.38 Total: -78.21 kcal Atomic # 14 Polarization: 39.07 SS G_CDS: 2.03 Total: 41.10 kcal Total: -64.39 0.69 -63.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337230838.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.792 kcal (2) G-P(sol) polarization free energy of solvation -64.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds