Wall clock time and date at job start Mon Mar 30 2020 00:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.47217 * 2 1 4 4 C 1.46498 * 120.00490 * 83.13521 * 3 2 1 5 5 C 1.50706 * 109.46926 * 270.00114 * 4 3 2 6 6 H 1.08005 * 119.99490 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00107 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00056 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00149 * 179.97438 * 7 5 4 10 10 H 1.48510 * 109.47228 * 59.99537 * 9 7 5 11 11 H 1.48501 * 109.47528 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47383 * 299.99840 * 9 7 5 13 13 C 1.34778 * 119.99588 * 263.13104 * 3 2 1 14 14 O 1.21282 * 119.99962 * 173.60640 * 13 3 2 15 15 C 1.50704 * 120.00361 * 353.60626 * 13 3 2 16 16 C 1.50700 * 115.54815 * 70.88088 * 15 13 3 17 17 O 1.20826 * 120.00019 * 103.84240 * 16 15 13 18 18 O 1.34228 * 120.00257 * 283.83914 * 16 15 13 19 19 C 1.52993 * 117.49714 * 285.17902 * 15 13 3 20 20 C 1.52997 * 117.49959 * 216.55449 * 15 13 3 21 21 C 1.52999 * 117.49743 * 214.97393 * 20 15 13 22 22 C 1.52995 * 117.50063 * 0.02562 * 20 15 13 23 23 H 1.08995 * 109.46990 * 171.83489 * 1 2 3 24 24 H 1.09004 * 109.47214 * 291.84203 * 1 2 3 25 25 H 1.08999 * 109.46503 * 51.83764 * 1 2 3 26 26 H 1.08993 * 109.47405 * 239.99178 * 2 1 3 27 27 H 1.09003 * 109.46962 * 119.99595 * 2 1 3 28 28 H 1.09000 * 109.47429 * 150.00204 * 4 3 2 29 29 H 1.08997 * 109.47140 * 29.99178 * 4 3 2 30 30 H 0.97000 * 120.00164 * 180.02562 * 8 7 5 31 31 H 0.96702 * 117.00161 * 184.68647 * 18 16 15 32 32 H 1.09002 * 117.50354 * 359.97438 * 19 15 13 33 33 H 1.09002 * 117.50204 * 145.01394 * 19 15 13 34 34 H 1.09009 * 109.46926 * 60.00322 * 21 20 15 35 35 H 1.08997 * 109.47421 * 179.97438 * 21 20 15 36 36 H 1.09004 * 109.47361 * 300.00581 * 21 20 15 37 37 H 1.09002 * 109.47204 * 59.99595 * 22 20 15 38 38 H 1.09002 * 109.47491 * 180.02562 * 22 20 15 39 39 H 1.09010 * 109.46665 * 299.99714 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1196 2.1225 1.2596 5 6 0.8243 2.8468 1.5216 6 1 0.0076 2.7637 0.8198 7 6 0.6823 3.6165 2.6566 8 7 1.6770 3.7182 3.5109 9 14 -0.9230 4.5150 2.9811 10 1 -2.0312 3.5307 3.0740 11 1 -0.8205 5.2663 4.2579 12 1 -1.1938 5.4617 1.8696 13 6 2.3746 1.9699 -1.1589 14 8 2.6679 3.1466 -1.1762 15 6 2.4085 1.1662 -2.4332 16 6 1.0647 0.7606 -2.9818 17 8 0.6014 1.3405 -3.9351 18 8 0.3826 -0.2449 -2.4114 19 6 3.5728 0.1920 -2.6232 20 6 3.5157 1.4844 -3.4400 21 6 3.1741 1.3660 -4.9266 22 6 4.5042 2.5940 -3.0757 23 1 -0.3633 -1.0172 -0.1459 24 1 -0.3634 0.3824 0.9539 25 1 -0.3632 0.6350 -0.8080 26 1 1.8934 -0.5139 -0.8898 27 1 1.8933 -0.5138 0.8900 28 1 2.9327 2.8452 1.1915 29 1 2.3185 1.4273 2.0752 30 1 1.5769 4.2594 4.3097 31 1 -0.4412 -0.5151 -2.8396 32 1 4.3145 0.1327 -1.8266 33 1 3.3670 -0.7427 -3.1449 34 1 2.3602 2.0497 -5.1680 35 1 4.0507 1.6207 -5.5223 36 1 2.8679 0.3438 -5.1488 37 1 5.0210 2.3315 -2.1526 38 1 5.2315 2.7109 -3.8791 39 1 3.9639 3.5304 -2.9361 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589730401.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:59 Heat of formation + Delta-G solvation = -96.391994 kcal Electronic energy + Delta-G solvation = -22321.178089 eV Core-core repulsion = 19037.149965 eV Total energy + Delta-G solvation = -3284.028123 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.05497 -38.97278 -37.30864 -36.00726 -35.16599 -32.68885 -29.96988 -29.86929 -27.44353 -27.22357 -25.24869 -23.29918 -22.72017 -21.39530 -19.66811 -18.43886 -17.67363 -16.92928 -16.53749 -15.98069 -15.49330 -14.78788 -14.33966 -14.27418 -13.85764 -13.71474 -13.56765 -13.03242 -12.88740 -12.55718 -12.21334 -12.07163 -11.97235 -11.72798 -11.55515 -11.33785 -11.24228 -11.16085 -10.91895 -10.78550 -10.56803 -10.36356 -10.05355 -9.97766 -9.80623 -9.57557 -8.88709 -8.41561 -7.68648 -6.03197 -4.06646 2.14593 2.75439 3.32923 3.37199 3.40407 3.43846 3.47373 3.83462 4.45767 4.52412 4.69755 4.75665 5.06629 5.25229 5.32294 5.46837 5.55907 5.60985 5.75028 5.78658 5.92463 5.94216 6.02222 6.04626 6.05963 6.27186 6.31741 6.52397 6.53444 6.60863 6.94281 7.05515 7.39297 7.53750 7.92630 7.94298 8.23942 8.36529 8.87466 9.02940 9.57701 11.05073 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.022999 B = 0.006533 C = 0.006007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.147152 B = 4285.027822 C = 4659.985621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.111 3.889 3 N -0.587 5.587 4 C 0.248 3.752 5 C -0.520 4.520 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.896 5.896 9 Si 0.896 3.104 10 H -0.277 1.277 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.546 3.454 14 O -0.518 6.518 15 C -0.161 4.161 16 C 0.525 3.475 17 O -0.502 6.502 18 O -0.496 6.496 19 C -0.139 4.139 20 C -0.063 4.063 21 C -0.119 4.119 22 C -0.116 4.116 23 H 0.050 0.950 24 H 0.062 0.938 25 H 0.054 0.946 26 H 0.074 0.926 27 H 0.066 0.934 28 H 0.042 0.958 29 H 0.034 0.966 30 H 0.263 0.737 31 H 0.404 0.596 32 H 0.111 0.889 33 H 0.106 0.894 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.052 0.948 37 H 0.059 0.941 38 H 0.059 0.941 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.469 -11.476 -12.431 17.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 N -0.319 5.319 4 C 0.129 3.871 5 C -0.559 4.559 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.536 5.536 9 Si 0.723 3.277 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.330 3.670 14 O -0.394 6.394 15 C -0.166 4.166 16 C 0.366 3.634 17 O -0.389 6.389 18 O -0.308 6.308 19 C -0.177 4.177 20 C -0.063 4.063 21 C -0.176 4.176 22 C -0.173 4.173 23 H 0.069 0.931 24 H 0.081 0.919 25 H 0.073 0.927 26 H 0.093 0.907 27 H 0.085 0.915 28 H 0.060 0.940 29 H 0.052 0.948 30 H 0.073 0.927 31 H 0.263 0.737 32 H 0.130 0.870 33 H 0.125 0.875 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.071 0.929 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 2.906 -10.464 -12.277 16.391 hybrid contribution -1.692 0.214 0.163 1.713 sum 1.214 -10.250 -12.114 15.915 Atomic orbital electron populations 1.22135 0.95932 1.00407 1.02499 1.21494 0.95169 0.83001 1.01589 1.48280 1.61607 1.13838 1.08128 1.19318 0.98103 0.91540 0.78145 1.21377 0.99268 1.29036 1.06230 0.92436 1.24913 0.96801 0.96354 0.96005 1.69913 1.31223 1.40418 1.11996 0.86596 0.83642 0.79944 0.77477 1.20270 1.21182 1.20223 1.18651 0.79214 0.86561 0.82573 1.90681 1.48984 1.14761 1.84938 1.21222 0.87832 1.06880 1.00627 1.21741 0.84991 0.76943 0.79724 1.90679 1.68163 1.52928 1.27134 1.84891 1.39368 1.50734 1.55797 1.23512 0.97139 0.94096 1.02920 1.21723 0.94929 0.97001 0.92684 1.21498 1.02396 1.02161 0.91584 1.21460 0.96877 0.98196 1.00740 0.93074 0.91887 0.92716 0.90748 0.91533 0.94037 0.94794 0.92708 0.73673 0.87038 0.87530 0.90281 0.91592 0.92883 0.92195 0.92229 0.89662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 8.06 37.16 0.30 -2.15 16 2 C 0.11 1.84 5.65 -4.04 -0.02 1.82 16 3 N -0.59 -12.42 2.47 -175.06 -0.43 -12.85 16 4 C 0.25 6.40 5.15 -5.19 -0.03 6.38 16 5 C -0.52 -14.70 8.66 -34.44 -0.30 -15.00 16 6 H 0.06 1.65 7.74 -52.48 -0.41 1.24 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.90 -26.56 13.29 55.43 0.74 -25.82 16 9 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 13 C 0.55 11.52 6.58 -10.98 -0.07 11.45 16 14 O -0.52 -12.96 14.13 5.56 0.08 -12.89 16 15 C -0.16 -2.60 1.26 -156.82 -0.20 -2.80 16 16 C 0.52 8.07 6.67 36.01 0.24 8.31 16 17 O -0.50 -8.76 15.54 -18.75 -0.29 -9.05 16 18 O -0.50 -5.80 7.33 -39.25 -0.29 -6.09 16 19 C -0.14 -1.70 8.27 -26.73 -0.22 -1.92 16 20 C -0.06 -0.88 2.69 -154.51 -0.42 -1.29 16 21 C -0.12 -1.45 8.45 37.16 0.31 -1.13 16 22 C -0.12 -1.68 8.34 37.15 0.31 -1.37 16 23 H 0.05 0.64 8.10 -51.93 -0.42 0.22 16 24 H 0.06 1.19 7.70 -51.93 -0.40 0.79 16 25 H 0.05 0.93 6.07 -51.93 -0.31 0.61 16 26 H 0.07 1.04 4.50 -51.93 -0.23 0.81 16 27 H 0.07 1.05 7.99 -51.93 -0.42 0.64 16 28 H 0.04 1.20 7.52 -51.93 -0.39 0.81 16 29 H 0.03 0.88 7.96 -51.93 -0.41 0.47 16 30 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.40 2.92 9.10 45.56 0.41 3.34 16 32 H 0.11 1.32 8.05 -51.93 -0.42 0.90 16 33 H 0.11 1.03 8.05 -51.93 -0.42 0.61 16 34 H 0.08 1.12 6.87 -51.92 -0.36 0.76 16 35 H 0.07 0.66 7.92 -51.93 -0.41 0.25 16 36 H 0.05 0.58 7.90 -51.93 -0.41 0.17 16 37 H 0.06 0.89 7.90 -51.93 -0.41 0.48 16 38 H 0.06 0.69 7.92 -51.93 -0.41 0.27 16 39 H 0.08 1.48 6.81 -51.92 -0.35 1.13 16 LS Contribution 315.27 15.07 4.75 4.75 Total: -1.00 -34.08 315.27 -5.56 -39.64 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -4.90 Total: 1.26 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: -0.19 Total: 3.95 kcal Atomic # 7 Polarization: -38.98 SS G_CDS: 0.30 Total: -38.67 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -0.50 Total: -28.03 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -34.08 -5.56 -39.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589730401.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.753 kcal (2) G-P(sol) polarization free energy of solvation -34.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds