Wall clock time and date at job start Mon Mar 30 2020 00:46:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.47217 * 2 1 4 4 C 1.46498 * 120.00490 * 83.13521 * 3 2 1 5 5 C 1.50706 * 109.46926 * 270.00114 * 4 3 2 6 6 H 1.08005 * 119.99490 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00107 * 180.02562 * 5 4 3 8 8 N 1.31513 * 120.00056 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00149 * 179.97438 * 7 5 4 10 10 H 1.48510 * 109.47228 * 59.99537 * 9 7 5 11 11 H 1.48501 * 109.47528 * 179.97438 * 9 7 5 12 12 H 1.48498 * 109.47383 * 299.99840 * 9 7 5 13 13 C 1.34778 * 119.99588 * 263.13104 * 3 2 1 14 14 O 1.21282 * 119.99962 * 173.60640 * 13 3 2 15 15 C 1.50704 * 120.00361 * 353.60626 * 13 3 2 16 16 C 1.50700 * 115.54815 * 70.88088 * 15 13 3 17 17 O 1.20826 * 120.00019 * 103.84240 * 16 15 13 18 18 O 1.34228 * 120.00257 * 283.83914 * 16 15 13 19 19 C 1.52993 * 117.49714 * 285.17902 * 15 13 3 20 20 C 1.52997 * 117.49959 * 216.55449 * 15 13 3 21 21 C 1.52999 * 117.49743 * 214.97393 * 20 15 13 22 22 C 1.52995 * 117.50063 * 0.02562 * 20 15 13 23 23 H 1.08995 * 109.46990 * 171.83489 * 1 2 3 24 24 H 1.09004 * 109.47214 * 291.84203 * 1 2 3 25 25 H 1.08999 * 109.46503 * 51.83764 * 1 2 3 26 26 H 1.08993 * 109.47405 * 239.99178 * 2 1 3 27 27 H 1.09003 * 109.46962 * 119.99595 * 2 1 3 28 28 H 1.09000 * 109.47429 * 150.00204 * 4 3 2 29 29 H 1.08997 * 109.47140 * 29.99178 * 4 3 2 30 30 H 0.97000 * 120.00164 * 180.02562 * 8 7 5 31 31 H 0.96702 * 117.00161 * 184.68647 * 18 16 15 32 32 H 1.09002 * 117.50354 * 359.97438 * 19 15 13 33 33 H 1.09002 * 117.50204 * 145.01394 * 19 15 13 34 34 H 1.09009 * 109.46926 * 60.00322 * 21 20 15 35 35 H 1.08997 * 109.47421 * 179.97438 * 21 20 15 36 36 H 1.09004 * 109.47361 * 300.00581 * 21 20 15 37 37 H 1.09002 * 109.47204 * 59.99595 * 22 20 15 38 38 H 1.09002 * 109.47491 * 180.02562 * 22 20 15 39 39 H 1.09010 * 109.46665 * 299.99714 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1196 2.1225 1.2596 5 6 0.8243 2.8468 1.5216 6 1 0.0076 2.7637 0.8198 7 6 0.6823 3.6165 2.6566 8 7 1.6770 3.7182 3.5109 9 14 -0.9230 4.5150 2.9811 10 1 -2.0312 3.5307 3.0740 11 1 -0.8205 5.2663 4.2579 12 1 -1.1938 5.4617 1.8696 13 6 2.3746 1.9699 -1.1589 14 8 2.6679 3.1466 -1.1762 15 6 2.4085 1.1662 -2.4332 16 6 1.0647 0.7606 -2.9818 17 8 0.6014 1.3405 -3.9351 18 8 0.3826 -0.2449 -2.4114 19 6 3.5728 0.1920 -2.6232 20 6 3.5157 1.4844 -3.4400 21 6 3.1741 1.3660 -4.9266 22 6 4.5042 2.5940 -3.0757 23 1 -0.3633 -1.0172 -0.1459 24 1 -0.3634 0.3824 0.9539 25 1 -0.3632 0.6350 -0.8080 26 1 1.8934 -0.5139 -0.8898 27 1 1.8933 -0.5138 0.8900 28 1 2.9327 2.8452 1.1915 29 1 2.3185 1.4273 2.0752 30 1 1.5769 4.2594 4.3097 31 1 -0.4412 -0.5151 -2.8396 32 1 4.3145 0.1327 -1.8266 33 1 3.3670 -0.7427 -3.1449 34 1 2.3602 2.0497 -5.1680 35 1 4.0507 1.6207 -5.5223 36 1 2.8679 0.3438 -5.1488 37 1 5.0210 2.3315 -2.1526 38 1 5.2315 2.7109 -3.8791 39 1 3.9639 3.5304 -2.9361 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589730401.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:59 Heat of formation + Delta-G solvation = -119.849084 kcal Electronic energy + Delta-G solvation = -22322.195264 eV Core-core repulsion = 19037.149965 eV Total energy + Delta-G solvation = -3285.045299 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.29851 -40.37152 -38.57771 -37.23271 -36.77708 -34.81295 -31.46791 -31.16564 -29.11696 -28.46628 -26.54639 -25.00925 -24.30439 -22.65697 -21.00276 -19.61833 -18.86275 -18.69449 -18.36480 -17.32071 -17.10300 -16.53172 -15.84899 -15.53842 -15.21574 -15.08918 -14.74482 -14.40044 -14.21429 -14.16572 -13.67379 -13.61917 -13.31621 -13.12718 -12.95049 -12.84340 -12.72308 -12.65318 -12.48459 -12.22778 -12.09104 -11.93001 -11.69428 -11.55221 -11.19472 -10.96276 -10.63406 -10.47655 -9.47957 -8.22869 -6.35053 0.92596 1.33177 1.37147 1.43981 1.51259 2.08443 2.21043 2.34974 2.44367 3.06918 3.43617 3.45694 3.60167 4.04034 4.11490 4.27452 4.42737 4.58180 4.66006 4.76092 4.77663 4.80620 4.95462 4.96552 4.98419 5.01357 5.07900 5.12580 5.23380 5.28376 5.41159 5.55993 5.59716 5.61481 5.84619 6.06425 6.66730 6.74650 6.95053 7.24676 7.40274 8.84218 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.022999 B = 0.006533 C = 0.006007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.147152 B = 4285.027822 C = 4659.985621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.105 3.895 3 N -0.592 5.592 4 C 0.263 3.737 5 C -0.532 4.532 6 H 0.048 0.952 7 C 0.010 3.990 8 N -0.927 5.927 9 Si 0.959 3.041 10 H -0.261 1.261 11 H -0.276 1.276 12 H -0.283 1.283 13 C 0.539 3.461 14 O -0.573 6.573 15 C -0.188 4.188 16 C 0.533 3.467 17 O -0.528 6.528 18 O -0.484 6.484 19 C -0.103 4.103 20 C -0.070 4.070 21 C -0.112 4.112 22 C -0.113 4.113 23 H 0.095 0.905 24 H 0.028 0.972 25 H 0.044 0.956 26 H 0.109 0.891 27 H 0.074 0.926 28 H -0.001 1.001 29 H 0.028 0.972 30 H 0.267 0.733 31 H 0.427 0.573 32 H 0.116 0.884 33 H 0.147 0.853 34 H 0.053 0.947 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.047 0.953 38 H 0.091 0.909 39 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.829 -14.049 -13.816 19.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.016 4.016 3 N -0.322 5.322 4 C 0.142 3.858 5 C -0.571 4.571 6 H 0.066 0.934 7 C -0.189 4.189 8 N -0.567 5.567 9 Si 0.783 3.217 10 H -0.185 1.185 11 H -0.201 1.201 12 H -0.209 1.209 13 C 0.326 3.674 14 O -0.452 6.452 15 C -0.193 4.193 16 C 0.375 3.625 17 O -0.417 6.417 18 O -0.298 6.298 19 C -0.140 4.140 20 C -0.070 4.070 21 C -0.169 4.169 22 C -0.170 4.170 23 H 0.113 0.887 24 H 0.047 0.953 25 H 0.063 0.937 26 H 0.127 0.873 27 H 0.092 0.908 28 H 0.017 0.983 29 H 0.046 0.954 30 H 0.076 0.924 31 H 0.290 0.710 32 H 0.134 0.866 33 H 0.165 0.835 34 H 0.072 0.928 35 H 0.107 0.893 36 H 0.090 0.910 37 H 0.066 0.934 38 H 0.109 0.891 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.237 -13.107 -13.666 19.067 hybrid contribution -1.465 0.989 0.602 1.867 sum 0.771 -12.119 -13.064 17.836 Atomic orbital electron populations 1.22082 0.95381 1.02615 1.00175 1.21830 0.95584 0.80569 1.03635 1.48288 1.61782 1.15350 1.06773 1.18780 0.95737 0.90870 0.80389 1.21595 0.99773 1.29576 1.06149 0.93370 1.25755 1.00216 0.97096 0.95839 1.70019 1.33068 1.41118 1.12450 0.85606 0.79949 0.78814 0.77289 1.18547 1.20068 1.20879 1.19437 0.77640 0.86396 0.83945 1.90651 1.51030 1.17438 1.86101 1.21047 0.90035 1.09381 0.98812 1.21480 0.84594 0.77209 0.79241 1.90680 1.68546 1.53975 1.28491 1.84787 1.40372 1.49247 1.55353 1.23738 0.93917 0.94430 1.01934 1.21923 0.93537 0.97923 0.93652 1.21467 1.02525 1.02688 0.90231 1.21398 0.97357 0.96867 1.01420 0.88668 0.95318 0.93733 0.87300 0.90769 0.98292 0.95398 0.92429 0.70975 0.86605 0.83502 0.92830 0.89274 0.91000 0.93420 0.89057 0.93518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.38 8.06 71.98 0.58 -3.80 16 2 C 0.11 3.31 5.65 86.38 0.49 3.79 16 3 N -0.59 -25.40 2.47 -826.15 -2.04 -27.44 16 4 C 0.26 14.22 5.15 85.64 0.44 14.66 16 5 C -0.53 -31.06 8.66 25.60 0.22 -30.84 16 6 H 0.05 2.84 7.74 -2.91 -0.02 2.81 16 7 C 0.01 0.58 5.46 84.65 0.46 1.04 16 8 N -0.93 -56.29 13.29 21.44 0.28 -56.01 16 9 Si 0.96 45.97 29.54 68.60 2.03 47.99 16 10 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 11 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 12 H -0.28 -13.78 7.11 99.48 0.71 -13.07 16 13 C 0.54 23.24 6.58 87.66 0.58 23.82 16 14 O -0.57 -30.39 14.13 -3.04 -0.04 -30.43 16 15 C -0.19 -5.83 1.26 -53.68 -0.07 -5.90 16 16 C 0.53 15.21 6.67 71.24 0.48 15.69 16 17 O -0.53 -17.68 15.54 21.96 0.34 -17.34 16 18 O -0.48 -9.54 7.33 -51.40 -0.38 -9.92 16 19 C -0.10 -2.15 8.27 30.59 0.25 -1.90 16 20 C -0.07 -1.83 2.69 -52.18 -0.14 -1.97 16 21 C -0.11 -2.42 8.45 71.98 0.61 -1.82 16 22 C -0.11 -3.30 8.34 71.98 0.60 -2.70 16 23 H 0.09 2.02 8.10 -2.39 -0.02 2.00 16 24 H 0.03 1.05 7.70 -2.38 -0.02 1.03 16 25 H 0.04 1.43 6.07 -2.39 -0.01 1.42 16 26 H 0.11 2.66 4.50 -2.39 -0.01 2.65 16 27 H 0.07 2.22 7.99 -2.39 -0.02 2.20 16 28 H 0.00 -0.06 7.52 -2.39 -0.02 -0.08 16 29 H 0.03 1.52 7.96 -2.39 -0.02 1.50 16 30 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 31 H 0.43 4.41 9.10 -74.06 -0.67 3.74 16 32 H 0.12 2.37 8.05 -2.39 -0.02 2.35 16 33 H 0.15 1.94 8.05 -2.39 -0.02 1.92 16 34 H 0.05 1.45 6.87 -2.38 -0.02 1.44 16 35 H 0.09 1.49 7.92 -2.39 -0.02 1.47 16 36 H 0.07 1.27 7.90 -2.39 -0.02 1.25 16 37 H 0.05 1.45 7.90 -2.39 -0.02 1.43 16 38 H 0.09 1.98 7.92 -2.39 -0.02 1.96 16 39 H 0.05 1.72 6.81 -2.38 -0.02 1.70 16 Total: -1.00 -78.95 315.27 5.08 -73.88 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: 0.39 Total: 9.18 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: 4.50 Total: 10.08 kcal Atomic # 7 Polarization: -81.69 SS G_CDS: -1.76 Total: -83.45 kcal Atomic # 8 Polarization: -57.61 SS G_CDS: -0.08 Total: -57.68 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 47.99 kcal Total: -78.95 5.08 -73.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589730401.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.974 kcal (2) G-P(sol) polarization free energy of solvation -78.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds