Wall clock time and date at job start Mon Mar 30 2020 01:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 119.99881 * 2 1 4 4 H 1.48501 * 109.47054 * 272.89773 * 3 2 1 5 5 H 1.48497 * 109.47324 * 32.90277 * 3 2 1 6 6 H 1.48501 * 109.46722 * 152.90053 * 3 2 1 7 7 C 1.38817 * 119.99923 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00130 * 339.35621 * 7 2 1 9 9 N 1.36935 * 119.99782 * 159.36242 * 7 2 1 10 10 C 1.46925 * 120.62758 * 152.62208 * 9 7 2 11 11 C 1.53190 * 108.89356 * 126.30089 * 10 9 7 12 12 C 1.53352 * 109.15070 * 54.57285 * 11 10 9 13 13 C 1.53001 * 109.41800 * 178.67720 * 12 11 10 14 14 C 1.53007 * 109.46932 * 295.12870 * 13 12 11 15 15 N 1.46497 * 109.46778 * 180.02562 * 14 13 12 16 16 C 1.34780 * 120.00039 * 180.02562 * 15 14 13 17 17 O 1.21347 * 119.99810 * 359.97438 * 16 15 14 18 18 C 1.49450 * 120.00149 * 180.02562 * 16 15 14 19 19 N 1.34770 * 120.00059 * 179.97438 * 18 16 15 20 20 O 1.21347 * 120.00041 * 359.97438 * 18 16 15 21 21 C 1.53037 * 109.61060 * 298.71684 * 12 11 10 22 22 C 1.46926 * 120.63420 * 332.60348 * 9 7 2 23 23 H 0.96999 * 119.99917 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.58551 * 246.15355 * 10 9 7 25 25 H 1.08997 * 109.59252 * 6.43657 * 10 9 7 26 26 H 1.09004 * 109.50240 * 174.65815 * 11 10 9 27 27 H 1.09004 * 109.49453 * 294.75209 * 11 10 9 28 28 H 1.09008 * 109.41936 * 58.75652 * 12 11 10 29 29 H 1.08996 * 109.47446 * 55.12787 * 13 12 11 30 30 H 1.08996 * 109.47034 * 175.13315 * 13 12 11 31 31 H 1.09000 * 109.46834 * 299.99728 * 14 13 12 32 32 H 1.08996 * 109.46898 * 60.00361 * 14 13 12 33 33 H 0.97010 * 120.00286 * 0.02562 * 15 14 13 34 34 H 0.97002 * 119.99903 * 0.02562 * 19 18 16 35 35 H 0.97000 * 120.00339 * 179.97438 * 19 18 16 36 36 H 1.09003 * 109.49698 * 301.42330 * 21 12 11 37 37 H 1.08994 * 109.52761 * 181.33744 * 21 12 11 38 38 H 1.09002 * 109.58248 * 353.41531 * 22 9 7 39 39 H 1.08994 * 109.58922 * 113.70036 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4363 2.0818 -1.3983 5 1 1.4797 2.6342 0.7605 6 1 3.5770 1.4232 0.6378 7 6 2.0103 -1.2022 -0.0005 8 1 1.5223 -2.1076 0.3288 9 7 3.3137 -1.2400 -0.4185 10 6 4.2349 -2.2633 0.0944 11 6 4.8749 -2.9934 -1.0905 12 6 5.5284 -1.9650 -2.0216 13 6 6.1981 -2.6904 -3.1904 14 6 7.3472 -3.5528 -2.6643 15 7 7.9889 -4.2469 -3.7835 16 6 9.0328 -5.0689 -3.5574 17 8 9.4414 -5.2338 -2.4267 18 6 9.6878 -5.7765 -4.6992 19 7 10.7319 -6.5981 -4.4731 20 8 9.2795 -5.6113 -5.8299 21 6 4.4619 -1.0081 -2.5592 22 6 3.8176 -0.2585 -1.3888 23 1 -0.4850 0.8400 -0.0004 24 1 5.0117 -1.7882 0.6936 25 1 3.6843 -2.9758 0.7086 26 1 5.6299 -3.6892 -0.7244 27 1 4.1079 -3.5424 -1.6367 28 1 6.2778 -1.3994 -1.4678 29 1 5.4671 -3.3252 -3.6910 30 1 6.5879 -1.9579 -3.8973 31 1 8.0783 -2.9179 -2.1637 32 1 6.9575 -4.2853 -1.9574 33 1 7.6625 -4.1148 -4.6875 34 1 11.0580 -6.7305 -3.5692 35 1 11.1568 -7.0577 -5.2142 36 1 3.6989 -1.5759 -3.0917 37 1 4.9239 -0.2926 -3.2393 38 1 2.9910 0.3503 -1.7554 39 1 4.5584 0.3816 -0.9099 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698724578.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:18 Heat of formation + Delta-G solvation = -62.768376 kcal Electronic energy + Delta-G solvation = -20475.624365 eV Core-core repulsion = 17225.347023 eV Total energy + Delta-G solvation = -3250.277343 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.83665 -38.83228 -38.20629 -35.90049 -34.21343 -33.51839 -31.54145 -30.41080 -29.20476 -26.09732 -24.32669 -23.27371 -22.11463 -21.18379 -20.57516 -19.37781 -18.90110 -17.56704 -16.79950 -16.39342 -16.26387 -15.59411 -15.20054 -15.04609 -14.29701 -14.13610 -13.99092 -13.68561 -13.36671 -13.14890 -12.80222 -12.34531 -12.09230 -11.87111 -11.72837 -11.50227 -11.18416 -10.78535 -10.56933 -10.41898 -10.32264 -10.11345 -10.02560 -9.78780 -9.61694 -9.45980 -9.35488 -8.59395 -6.94422 -5.93144 -3.28225 1.08233 2.18366 2.88811 3.32823 3.49413 3.52632 3.55364 4.23605 4.54723 4.71721 4.88858 4.99285 5.12071 5.34475 5.36600 5.53549 5.56042 5.80691 5.83748 5.90482 5.97284 6.03509 6.10487 6.12692 6.24623 6.39863 6.45647 6.50636 6.57042 6.67609 6.69400 6.74299 6.98417 7.01297 7.44929 7.67213 7.99340 8.35026 8.97235 9.74686 10.13314 11.23060 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.049608 B = 0.003257 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.284125 B = 8595.716661 C = 8728.185190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.021 3.979 3 Si 0.884 3.116 4 H -0.289 1.289 5 H -0.304 1.304 6 H -0.271 1.271 7 C -0.258 4.258 8 H 0.085 0.915 9 N -0.607 5.607 10 C 0.148 3.852 11 C -0.133 4.133 12 C -0.076 4.076 13 C -0.127 4.127 14 C 0.114 3.886 15 N -0.695 5.695 16 C 0.502 3.498 17 O -0.521 6.521 18 C 0.514 3.486 19 N -0.823 5.823 20 O -0.523 6.523 21 C -0.127 4.127 22 C 0.125 3.875 23 H 0.262 0.738 24 H 0.021 0.979 25 H 0.061 0.939 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.413 0.587 34 H 0.414 0.586 35 H 0.410 0.590 36 H 0.065 0.935 37 H 0.053 0.947 38 H 0.071 0.929 39 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.111 -9.897 -8.846 24.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.177 4.177 3 Si 0.714 3.286 4 H -0.217 1.217 5 H -0.232 1.232 6 H -0.196 1.196 7 C -0.386 4.386 8 H 0.102 0.898 9 N -0.331 5.331 10 C 0.022 3.978 11 C -0.172 4.172 12 C -0.095 4.095 13 C -0.165 4.165 14 C -0.009 4.009 15 N -0.348 5.348 16 C 0.282 3.718 17 O -0.397 6.397 18 C 0.293 3.707 19 N -0.389 5.389 20 O -0.398 6.398 21 C -0.167 4.167 22 C -0.001 4.001 23 H 0.072 0.928 24 H 0.039 0.961 25 H 0.080 0.920 26 H 0.074 0.926 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.098 0.902 33 H 0.249 0.751 34 H 0.245 0.755 35 H 0.243 0.757 36 H 0.084 0.916 37 H 0.071 0.929 38 H 0.090 0.910 39 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges 19.821 -9.691 -8.641 23.695 hybrid contribution 0.617 0.790 -0.336 1.058 sum 20.438 -8.901 -8.978 24.032 Atomic orbital electron populations 1.69840 1.05740 1.26504 1.53239 1.25287 0.95228 0.97587 0.99616 0.86934 0.80013 0.84666 0.76948 1.21672 1.23246 1.19604 1.18936 0.85050 0.94711 1.39952 0.89767 1.44359 1.08626 1.33397 1.46678 1.20914 0.92375 0.91308 0.93243 1.22196 0.99324 0.97339 0.98325 1.21029 0.97028 0.96524 0.94895 1.21920 0.96476 0.98795 0.99337 1.21722 0.95001 0.95903 0.88252 1.45907 1.31656 1.44432 1.12813 1.20024 0.81805 0.81051 0.88945 1.90785 1.63105 1.62781 1.23044 1.20206 0.81213 0.80235 0.89083 1.43532 1.33663 1.47165 1.14574 1.90825 1.62990 1.62646 1.23356 1.22041 0.97674 0.98194 0.98759 1.21326 0.97181 0.92034 0.89510 0.92815 0.96105 0.92010 0.92570 0.91849 0.91452 0.90997 0.91351 0.90817 0.90209 0.75109 0.75500 0.75723 0.91638 0.92874 0.91050 0.95871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.06 13.97 55.49 0.78 -27.28 16 2 C 0.02 0.62 5.23 -17.43 -0.09 0.53 16 3 Si 0.88 22.50 24.34 -169.99 -4.14 18.37 16 4 H -0.29 -7.07 6.62 56.52 0.37 -6.70 16 5 H -0.30 -7.89 7.11 56.52 0.40 -7.49 16 6 H -0.27 -6.79 6.63 56.52 0.37 -6.41 16 7 C -0.26 -7.24 10.04 -15.06 -0.15 -7.39 16 8 H 0.08 2.52 8.06 -52.49 -0.42 2.10 16 9 N -0.61 -14.35 2.77 -172.32 -0.48 -14.82 16 10 C 0.15 2.86 6.50 -3.71 -0.02 2.83 16 11 C -0.13 -2.05 5.16 -26.45 -0.14 -2.18 16 12 C -0.08 -1.06 2.15 -90.42 -0.19 -1.26 16 13 C -0.13 -1.37 4.80 -26.73 -0.13 -1.50 16 14 C 0.11 1.19 5.43 -4.04 -0.02 1.17 16 15 N -0.70 -6.83 5.55 -60.73 -0.34 -7.16 16 16 C 0.50 5.35 7.89 -11.58 -0.09 5.25 16 17 O -0.52 -6.65 16.48 5.50 0.09 -6.56 16 18 C 0.51 4.81 8.16 -11.59 -0.09 4.72 16 19 N -0.82 -4.67 8.87 30.90 0.27 -4.40 16 20 O -0.52 -6.18 17.31 5.50 0.10 -6.09 16 21 C -0.13 -2.13 5.36 -26.61 -0.14 -2.28 16 22 C 0.13 2.69 4.21 -3.71 -0.02 2.67 16 23 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 24 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 25 H 0.06 1.21 7.93 -51.93 -0.41 0.79 16 26 H 0.06 0.74 6.52 -51.93 -0.34 0.40 16 27 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 28 H 0.07 0.94 8.14 -51.92 -0.42 0.52 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 32 H 0.08 0.90 6.53 -51.93 -0.34 0.56 16 33 H 0.41 3.56 7.95 -40.82 -0.32 3.24 16 34 H 0.41 1.85 8.30 -40.82 -0.34 1.51 16 35 H 0.41 1.47 8.93 -40.82 -0.36 1.11 16 36 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.07 1.70 4.49 -51.93 -0.23 1.46 16 39 H 0.02 0.50 7.07 -51.93 -0.37 0.13 16 LS Contribution 313.81 15.07 4.73 4.73 Total: -1.00 -33.67 313.81 -5.79 -39.47 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -5.71 Total: 1.18 kcal Atomic # 6 Polarization: 3.66 SS G_CDS: -1.09 Total: 2.57 kcal Atomic # 7 Polarization: -53.90 SS G_CDS: 0.23 Total: -53.67 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.19 Total: -12.64 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -4.14 Total: 18.37 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -33.67 -5.79 -39.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698724578.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.302 kcal (2) G-P(sol) polarization free energy of solvation -33.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds