Wall clock time and date at job start Mon Mar 30 2020 01:36:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 119.99881 * 2 1 4 4 H 1.48501 * 109.47054 * 272.89773 * 3 2 1 5 5 H 1.48497 * 109.47324 * 32.90277 * 3 2 1 6 6 H 1.48501 * 109.46722 * 152.90053 * 3 2 1 7 7 C 1.38817 * 119.99923 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00130 * 339.35621 * 7 2 1 9 9 N 1.36935 * 119.99782 * 159.36242 * 7 2 1 10 10 C 1.46925 * 120.62758 * 152.62208 * 9 7 2 11 11 C 1.53190 * 108.89356 * 126.30089 * 10 9 7 12 12 C 1.53352 * 109.15070 * 54.57285 * 11 10 9 13 13 C 1.53001 * 109.41800 * 178.67720 * 12 11 10 14 14 C 1.53007 * 109.46932 * 295.12870 * 13 12 11 15 15 N 1.46497 * 109.46778 * 180.02562 * 14 13 12 16 16 C 1.34780 * 120.00039 * 180.02562 * 15 14 13 17 17 O 1.21347 * 119.99810 * 359.97438 * 16 15 14 18 18 C 1.49450 * 120.00149 * 180.02562 * 16 15 14 19 19 N 1.34770 * 120.00059 * 179.97438 * 18 16 15 20 20 O 1.21347 * 120.00041 * 359.97438 * 18 16 15 21 21 C 1.53037 * 109.61060 * 298.71684 * 12 11 10 22 22 C 1.46926 * 120.63420 * 332.60348 * 9 7 2 23 23 H 0.96999 * 119.99917 * 0.02562 * 1 2 3 24 24 H 1.09004 * 109.58551 * 246.15355 * 10 9 7 25 25 H 1.08997 * 109.59252 * 6.43657 * 10 9 7 26 26 H 1.09004 * 109.50240 * 174.65815 * 11 10 9 27 27 H 1.09004 * 109.49453 * 294.75209 * 11 10 9 28 28 H 1.09008 * 109.41936 * 58.75652 * 12 11 10 29 29 H 1.08996 * 109.47446 * 55.12787 * 13 12 11 30 30 H 1.08996 * 109.47034 * 175.13315 * 13 12 11 31 31 H 1.09000 * 109.46834 * 299.99728 * 14 13 12 32 32 H 1.08996 * 109.46898 * 60.00361 * 14 13 12 33 33 H 0.97010 * 120.00286 * 0.02562 * 15 14 13 34 34 H 0.97002 * 119.99903 * 0.02562 * 19 18 16 35 35 H 0.97000 * 120.00339 * 179.97438 * 19 18 16 36 36 H 1.09003 * 109.49698 * 301.42330 * 21 12 11 37 37 H 1.08994 * 109.52761 * 181.33744 * 21 12 11 38 38 H 1.09002 * 109.58248 * 353.41531 * 22 9 7 39 39 H 1.08994 * 109.58922 * 113.70036 * 22 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4363 2.0818 -1.3983 5 1 1.4797 2.6342 0.7605 6 1 3.5770 1.4232 0.6378 7 6 2.0103 -1.2022 -0.0005 8 1 1.5223 -2.1076 0.3288 9 7 3.3137 -1.2400 -0.4185 10 6 4.2349 -2.2633 0.0944 11 6 4.8749 -2.9934 -1.0905 12 6 5.5284 -1.9650 -2.0216 13 6 6.1981 -2.6904 -3.1904 14 6 7.3472 -3.5528 -2.6643 15 7 7.9889 -4.2469 -3.7835 16 6 9.0328 -5.0689 -3.5574 17 8 9.4414 -5.2338 -2.4267 18 6 9.6878 -5.7765 -4.6992 19 7 10.7319 -6.5981 -4.4731 20 8 9.2795 -5.6113 -5.8299 21 6 4.4619 -1.0081 -2.5592 22 6 3.8176 -0.2585 -1.3888 23 1 -0.4850 0.8400 -0.0004 24 1 5.0117 -1.7882 0.6936 25 1 3.6843 -2.9758 0.7086 26 1 5.6299 -3.6892 -0.7244 27 1 4.1079 -3.5424 -1.6367 28 1 6.2778 -1.3994 -1.4678 29 1 5.4671 -3.3252 -3.6910 30 1 6.5879 -1.9579 -3.8973 31 1 8.0783 -2.9179 -2.1637 32 1 6.9575 -4.2853 -1.9574 33 1 7.6625 -4.1148 -4.6875 34 1 11.0580 -6.7305 -3.5692 35 1 11.1568 -7.0577 -5.2142 36 1 3.6989 -1.5759 -3.0917 37 1 4.9239 -0.2926 -3.2393 38 1 2.9910 0.3503 -1.7554 39 1 4.5584 0.3816 -0.9099 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698724578.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:18 Heat of formation + Delta-G solvation = -91.007744 kcal Electronic energy + Delta-G solvation = -20476.848916 eV Core-core repulsion = 17225.347023 eV Total energy + Delta-G solvation = -3251.501894 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.61077 -39.86663 -39.35125 -36.98034 -35.33002 -34.52567 -33.39094 -31.89263 -30.49583 -27.34806 -25.65882 -24.67759 -23.46641 -22.39852 -21.47849 -20.70877 -19.62840 -18.78240 -18.22643 -17.27576 -17.08068 -17.01810 -16.39375 -16.00130 -15.80844 -15.29171 -15.16930 -14.95608 -14.88857 -14.45690 -14.26156 -14.00359 -13.39844 -13.17309 -12.90377 -12.87792 -12.46677 -12.29576 -12.16090 -12.00944 -11.63751 -11.54231 -11.17568 -11.04700 -10.91181 -10.83229 -10.61969 -10.24574 -8.90047 -8.16202 -5.46865 0.32613 1.29634 1.41231 1.47008 1.50784 2.12978 2.42151 2.88750 3.07431 3.39577 3.59587 3.75293 3.91140 4.04892 4.23569 4.35045 4.43509 4.61848 4.62910 4.65706 4.77816 4.92870 4.94445 5.02174 5.06254 5.22492 5.27434 5.29351 5.32233 5.37326 5.53343 5.65902 5.88773 5.91642 6.13438 6.29012 6.78884 6.94734 7.01055 7.65350 8.05670 9.04076 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.049608 B = 0.003257 C = 0.003207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.284125 B = 8595.716661 C = 8728.185190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.960 5.960 2 C -0.039 4.039 3 Si 0.950 3.050 4 H -0.273 1.273 5 H -0.313 1.313 6 H -0.262 1.262 7 C -0.248 4.248 8 H 0.049 0.951 9 N -0.622 5.622 10 C 0.139 3.861 11 C -0.123 4.123 12 C -0.071 4.071 13 C -0.114 4.114 14 C 0.118 3.882 15 N -0.689 5.689 16 C 0.501 3.499 17 O -0.545 6.545 18 C 0.516 3.484 19 N -0.801 5.801 20 O -0.551 6.551 21 C -0.120 4.120 22 C 0.116 3.884 23 H 0.261 0.739 24 H 0.033 0.967 25 H 0.048 0.952 26 H 0.084 0.916 27 H 0.050 0.950 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.420 0.580 34 H 0.423 0.577 35 H 0.423 0.577 36 H 0.052 0.948 37 H 0.083 0.917 38 H 0.045 0.955 39 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.218 -9.922 -10.063 27.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.607 5.607 2 C -0.233 4.233 3 Si 0.779 3.221 4 H -0.199 1.199 5 H -0.242 1.242 6 H -0.186 1.186 7 C -0.378 4.378 8 H 0.066 0.934 9 N -0.347 5.347 10 C 0.015 3.985 11 C -0.161 4.161 12 C -0.090 4.090 13 C -0.152 4.152 14 C -0.005 4.005 15 N -0.342 5.342 16 C 0.281 3.719 17 O -0.423 6.423 18 C 0.295 3.705 19 N -0.368 5.368 20 O -0.429 6.429 21 C -0.159 4.159 22 C -0.008 4.008 23 H 0.070 0.930 24 H 0.051 0.949 25 H 0.067 0.933 26 H 0.103 0.897 27 H 0.069 0.931 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.106 0.894 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.257 0.743 34 H 0.255 0.745 35 H 0.257 0.743 36 H 0.071 0.929 37 H 0.101 0.899 38 H 0.063 0.937 39 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 23.004 -9.751 -9.877 26.866 hybrid contribution -0.326 0.675 0.084 0.754 sum 22.678 -9.076 -9.793 26.316 Atomic orbital electron populations 1.69975 1.07477 1.27184 1.56014 1.25937 0.95865 1.01081 1.00455 0.85851 0.78619 0.80006 0.77582 1.19925 1.24193 1.18603 1.18889 0.87023 0.93419 1.38436 0.93365 1.44517 1.07697 1.34795 1.47724 1.21130 0.91874 0.90468 0.95055 1.22082 0.99527 0.97686 0.96849 1.20966 0.96373 0.95845 0.95793 1.21742 0.96334 0.98998 0.98104 1.21614 0.94900 0.95698 0.88268 1.45852 1.31289 1.43952 1.13065 1.20251 0.81753 0.80920 0.88941 1.90776 1.63890 1.63683 1.23948 1.20015 0.81761 0.80577 0.88188 1.43428 1.32160 1.45570 1.15616 1.90821 1.64130 1.63959 1.24028 1.21941 0.98047 0.98829 0.97095 1.21428 0.96620 0.92062 0.90719 0.93011 0.94871 0.93331 0.89720 0.93071 0.90468 0.90759 0.89448 0.90649 0.90885 0.74294 0.74524 0.74261 0.92872 0.89886 0.93699 0.94999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.28 13.97 21.65 0.30 -60.97 16 2 C -0.04 -2.32 5.23 84.86 0.44 -1.87 16 3 Si 0.95 47.08 24.34 68.60 1.67 48.75 16 4 H -0.27 -12.65 6.62 99.48 0.66 -11.99 16 5 H -0.31 -15.80 7.11 99.48 0.71 -15.09 16 6 H -0.26 -12.38 6.63 99.48 0.66 -11.72 16 7 C -0.25 -14.29 10.04 84.03 0.84 -13.45 16 8 H 0.05 3.05 8.06 -2.91 -0.02 3.03 16 9 N -0.62 -29.23 2.77 -699.10 -1.94 -31.16 16 10 C 0.14 5.26 6.50 86.36 0.56 5.82 16 11 C -0.12 -3.50 5.16 30.78 0.16 -3.34 16 12 C -0.07 -1.74 2.15 -10.66 -0.02 -1.77 16 13 C -0.11 -2.02 4.80 30.60 0.15 -1.87 16 14 C 0.12 2.08 5.43 86.38 0.47 2.54 16 15 N -0.69 -11.66 5.55 -464.41 -2.58 -14.24 16 16 C 0.50 9.56 7.89 87.27 0.69 10.25 16 17 O -0.54 -12.77 16.48 -3.24 -0.05 -12.82 16 18 C 0.52 8.60 8.16 87.27 0.71 9.31 16 19 N -0.80 -7.23 8.87 -174.51 -1.55 -8.78 16 20 O -0.55 -12.04 17.31 -3.24 -0.06 -12.10 16 21 C -0.12 -3.68 5.36 30.67 0.16 -3.52 16 22 C 0.12 4.80 4.21 86.36 0.36 5.16 16 23 H 0.26 15.81 8.31 -92.71 -0.77 15.04 16 24 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.05 1.91 7.93 -2.39 -0.02 1.89 16 26 H 0.08 1.96 6.52 -2.38 -0.02 1.95 16 27 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 29 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.07 1.41 6.53 -2.39 -0.02 1.40 16 33 H 0.42 6.09 7.95 -92.70 -0.74 5.35 16 34 H 0.42 2.76 8.30 -92.71 -0.77 1.99 16 35 H 0.42 2.01 8.93 -92.71 -0.83 1.18 16 36 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.04 2.08 4.49 -2.39 -0.01 2.07 16 39 H 0.03 1.27 7.07 -2.39 -0.02 1.25 16 Total: -1.00 -74.44 313.81 -1.00 -75.45 By element: Atomic # 1 Polarization: 9.93 SS G_CDS: -1.34 Total: 8.60 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: 4.53 Total: 7.27 kcal Atomic # 7 Polarization: -109.39 SS G_CDS: -5.76 Total: -115.15 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: -0.11 Total: -24.92 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 1.67 Total: 48.75 kcal Total: -74.44 -1.00 -75.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698724578.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.561 kcal (2) G-P(sol) polarization free energy of solvation -74.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds