Wall clock time and date at job start Mon Mar 30 2020 00:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.38239 * 2 1 4 4 C 1.50257 * 109.38673 * 119.78719 * 2 1 3 5 5 O 1.21279 * 118.62713 * 282.95887 * 4 2 1 6 6 N 1.33718 * 122.75054 * 102.92903 * 4 2 1 7 7 C 1.46009 * 122.92446 * 1.72003 * 6 4 2 8 8 C 1.52986 * 110.04492 * 341.83035 * 7 6 4 9 9 N 1.46909 * 109.40529 * 240.30655 * 2 1 3 10 10 C 1.46900 * 110.99330 * 53.52764 * 9 2 1 11 11 C 1.50702 * 109.47256 * 172.11974 * 10 9 2 12 12 O 1.21280 * 119.99566 * 353.82488 * 11 10 9 13 13 N 1.34774 * 120.00258 * 173.82844 * 11 10 9 14 14 C 1.46501 * 120.00098 * 179.97438 * 13 11 10 15 15 C 1.50700 * 109.47329 * 179.97438 * 14 13 11 16 16 H 1.08005 * 119.99929 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00405 * 180.02562 * 15 14 13 18 18 N 1.31519 * 119.99944 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00207 * 179.97438 * 17 15 14 20 20 H 1.48491 * 109.46968 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46846 * 120.00095 * 19 17 15 22 22 H 1.48499 * 109.47153 * 239.99532 * 19 17 15 23 23 H 1.08994 * 109.47243 * 295.94110 * 1 2 3 24 24 H 1.08998 * 109.46614 * 55.94052 * 1 2 3 25 25 H 1.08997 * 109.46803 * 175.94164 * 1 2 3 26 26 H 1.09006 * 109.47043 * 179.79225 * 3 2 1 27 27 H 1.08999 * 109.47438 * 299.78488 * 3 2 1 28 28 H 1.08999 * 109.47457 * 59.79133 * 3 2 1 29 29 H 0.96997 * 118.53971 * 181.68640 * 6 4 2 30 30 H 1.09004 * 109.37319 * 221.66026 * 7 6 4 31 31 H 1.09004 * 109.28375 * 101.95020 * 7 6 4 32 32 H 1.08994 * 109.59420 * 170.07169 * 8 7 6 33 33 H 1.09003 * 109.58866 * 290.52430 * 8 7 6 34 34 H 1.09008 * 109.47030 * 292.11687 * 10 9 2 35 35 H 1.08998 * 109.47593 * 52.11791 * 10 9 2 36 36 H 0.97001 * 120.00371 * 359.97438 * 13 11 10 37 37 H 1.08998 * 109.47400 * 300.00073 * 14 13 11 38 38 H 1.08997 * 109.47164 * 60.00045 * 14 13 11 39 39 H 0.96994 * 120.00032 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0378 1.4433 0.0000 4 6 2.0288 -0.7041 1.2301 5 8 1.9965 -0.1154 2.2899 6 7 2.5063 -1.9529 1.2053 7 6 2.6214 -2.7343 -0.0227 8 6 1.7374 -2.1285 -1.1145 9 7 2.0181 -0.6864 -1.2037 10 6 1.4241 -0.1084 -2.4165 11 6 2.0879 -0.7012 -3.6327 12 8 3.0425 -1.4380 -3.5038 13 7 1.6208 -0.4124 -4.8635 14 6 2.2665 -0.9883 -6.0457 15 6 1.5574 -0.5123 -7.2874 16 1 0.7106 0.1529 -7.2042 17 6 1.9895 -0.9261 -8.5295 18 7 3.0209 -1.7358 -8.6309 19 14 1.1100 -0.3367 -10.0685 20 1 -0.0099 0.5602 -9.6858 21 1 2.0648 0.4047 -10.9310 22 1 0.5765 -1.5060 -10.8123 23 1 -0.3633 0.4495 0.9241 24 1 -0.3632 0.5756 -0.8514 25 1 -0.3633 -1.0251 -0.0727 26 1 3.1279 1.4450 0.0037 27 1 1.6769 1.9555 -0.8919 28 1 1.6707 1.9577 0.8881 29 1 2.7893 -2.3575 2.0402 30 1 2.3060 -3.7597 0.1703 31 1 3.6595 -2.7318 -0.3550 32 1 1.9591 -2.6039 -2.0699 33 1 0.6882 -2.2817 -0.8621 34 1 0.3572 -0.3310 -2.4401 35 1 1.5698 0.9718 -2.4133 36 1 0.8571 0.1766 -4.9666 37 1 3.3096 -0.6738 -6.0795 38 1 2.2165 -2.0758 -5.9935 39 1 3.3251 -2.0266 -9.5048 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066529694.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:02 Heat of formation + Delta-G solvation = -61.845035 kcal Electronic energy + Delta-G solvation = -21233.966549 eV Core-core repulsion = 17983.729246 eV Total energy + Delta-G solvation = -3250.237304 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.05234 -38.94980 -37.18771 -35.47178 -34.21822 -32.37819 -31.92864 -29.49019 -27.65808 -27.58774 -26.27659 -23.53898 -22.69614 -22.03304 -19.69713 -18.20033 -17.81121 -17.39291 -16.62254 -15.72792 -15.64948 -15.26369 -15.04903 -14.79300 -14.55196 -14.19778 -13.89819 -13.65412 -13.22426 -12.79415 -12.72978 -12.36763 -12.17222 -12.01065 -11.88545 -11.75084 -11.44638 -11.38556 -11.13636 -10.98729 -10.88300 -10.35191 -9.90029 -9.42064 -9.22035 -9.07713 -8.77677 -8.43895 -7.92050 -6.20661 -4.27671 2.48850 3.10285 3.20681 3.27833 3.30029 3.30606 3.41843 4.15043 4.27462 4.34933 4.66887 4.74228 4.76969 4.97845 5.13434 5.15806 5.27028 5.34970 5.39938 5.40481 5.50805 5.66102 5.69413 5.76259 5.81352 5.91500 6.11713 6.53406 6.71309 6.85470 7.13963 7.26731 7.38615 7.47258 7.62855 7.92889 8.07842 8.57605 8.74316 9.05253 9.39346 10.89519 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.040563 B = 0.003782 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.118195 B = 7402.492579 C = 7774.189423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.092 3.908 3 C -0.129 4.129 4 C 0.538 3.462 5 O -0.553 6.553 6 N -0.718 5.718 7 C 0.117 3.883 8 C 0.027 3.973 9 N -0.501 5.501 10 C 0.028 3.972 11 C 0.498 3.502 12 O -0.538 6.538 13 N -0.713 5.713 14 C 0.251 3.749 15 C -0.544 4.544 16 H 0.063 0.937 17 C 0.064 3.936 18 N -0.885 5.885 19 Si 0.903 3.097 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 H 0.073 0.927 24 H 0.075 0.925 25 H 0.062 0.938 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.398 0.602 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.115 0.885 33 H 0.043 0.957 34 H 0.064 0.936 35 H 0.107 0.893 36 H 0.390 0.610 37 H 0.027 0.973 38 H 0.026 0.974 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.687 1.301 16.006 17.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.001 4.001 3 C -0.187 4.187 4 C 0.324 3.676 5 O -0.431 6.431 6 N -0.369 5.369 7 C -0.007 4.007 8 C -0.100 4.100 9 N -0.226 5.226 10 C -0.103 4.103 11 C 0.282 3.718 12 O -0.416 6.416 13 N -0.363 5.363 14 C 0.130 3.870 15 C -0.582 4.582 16 H 0.081 0.919 17 C -0.140 4.140 18 N -0.522 5.522 19 Si 0.730 3.270 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.208 1.208 23 H 0.092 0.908 24 H 0.094 0.906 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.234 0.766 30 H 0.098 0.902 31 H 0.099 0.901 32 H 0.133 0.867 33 H 0.061 0.939 34 H 0.082 0.918 35 H 0.124 0.876 36 H 0.222 0.778 37 H 0.045 0.955 38 H 0.044 0.956 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.425 1.119 16.243 16.872 hybrid contribution -1.495 0.144 -0.769 1.687 sum -5.920 1.262 15.474 16.616 Atomic orbital electron populations 1.22426 0.94293 1.02905 1.03999 1.21208 0.94468 0.96212 0.88239 1.21755 1.02479 0.91793 1.02658 1.19875 0.76414 0.81284 0.90054 1.90723 1.56491 1.64693 1.31197 1.45595 1.64828 1.15028 1.11446 1.21522 1.01775 0.94098 0.83341 1.22682 0.97206 0.88763 1.01394 1.62384 1.57510 1.02728 0.99982 1.22165 0.97404 1.01309 0.89386 1.20222 0.84750 0.82373 0.84441 1.90649 1.27460 1.37233 1.86273 1.46465 1.33932 1.49265 1.06589 1.19097 0.93540 0.94203 0.80117 1.21261 1.15777 1.30447 0.90709 0.91860 1.24948 0.94986 0.94773 0.99278 1.69980 1.24681 1.32891 1.24695 0.86369 0.79484 0.78580 0.82528 1.19635 1.20777 1.20802 0.90828 0.90583 0.91956 0.91340 0.91375 0.90834 0.76616 0.90198 0.90120 0.86735 0.93918 0.91841 0.87555 0.77783 0.95485 0.95575 0.92479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.74 7.62 37.16 0.28 -1.46 16 2 C 0.09 1.09 0.64 -132.96 -0.08 1.00 16 3 C -0.13 -1.45 8.13 37.16 0.30 -1.15 16 4 C 0.54 7.12 6.62 -11.67 -0.08 7.05 16 5 O -0.55 -8.80 17.07 5.56 0.09 -8.71 16 6 N -0.72 -7.87 5.52 -61.06 -0.34 -8.21 16 7 C 0.12 1.20 7.39 -4.31 -0.03 1.17 16 8 C 0.03 0.33 5.10 -3.68 -0.02 0.31 16 9 N -0.50 -6.58 4.14 -221.74 -0.92 -7.50 16 10 C 0.03 0.37 4.44 -4.97 -0.02 0.34 16 11 C 0.50 9.09 7.28 -10.99 -0.08 9.01 16 12 O -0.54 -11.86 14.67 5.56 0.08 -11.78 16 13 N -0.71 -13.97 5.55 -61.47 -0.34 -14.31 16 14 C 0.25 6.37 5.43 -5.19 -0.03 6.35 16 15 C -0.54 -14.27 9.28 -34.44 -0.32 -14.59 16 16 H 0.06 1.55 7.60 -52.48 -0.40 1.16 16 17 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 18 N -0.89 -25.51 13.29 55.43 0.74 -24.77 16 19 Si 0.90 20.36 29.54 -169.99 -5.02 15.34 16 20 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 23 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.08 0.64 6.73 -51.93 -0.35 0.30 16 25 H 0.06 0.60 6.32 -51.93 -0.33 0.27 16 26 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 27 H 0.07 0.65 6.37 -51.93 -0.33 0.32 16 28 H 0.07 0.81 7.82 -51.93 -0.41 0.40 16 29 H 0.40 3.69 8.84 -40.82 -0.36 3.33 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.11 1.66 5.92 -51.93 -0.31 1.35 16 33 H 0.04 0.46 6.17 -51.93 -0.32 0.14 16 34 H 0.06 0.69 6.77 -51.92 -0.35 0.34 16 35 H 0.11 1.22 6.14 -51.93 -0.32 0.90 16 36 H 0.39 6.47 8.32 -40.82 -0.34 6.13 16 37 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 312.65 15.07 4.71 4.71 Total: -1.00 -32.79 312.65 -6.65 -39.44 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -5.48 Total: 6.12 kcal Atomic # 6 Polarization: 9.84 SS G_CDS: -0.17 Total: 9.66 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: -0.86 Total: -54.79 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: 0.18 Total: -20.49 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.79 -6.65 -39.44 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066529694.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.401 kcal (2) G-P(sol) polarization free energy of solvation -32.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds