Wall clock time and date at job start Mon Mar 30 2020 00:51:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.38239 * 2 1 4 4 C 1.50257 * 109.38673 * 119.78719 * 2 1 3 5 5 O 1.21279 * 118.62713 * 282.95887 * 4 2 1 6 6 N 1.33718 * 122.75054 * 102.92903 * 4 2 1 7 7 C 1.46009 * 122.92446 * 1.72003 * 6 4 2 8 8 C 1.52986 * 110.04492 * 341.83035 * 7 6 4 9 9 N 1.46909 * 109.40529 * 240.30655 * 2 1 3 10 10 C 1.46900 * 110.99330 * 53.52764 * 9 2 1 11 11 C 1.50702 * 109.47256 * 172.11974 * 10 9 2 12 12 O 1.21280 * 119.99566 * 353.82488 * 11 10 9 13 13 N 1.34774 * 120.00258 * 173.82844 * 11 10 9 14 14 C 1.46501 * 120.00098 * 179.97438 * 13 11 10 15 15 C 1.50700 * 109.47329 * 179.97438 * 14 13 11 16 16 H 1.08005 * 119.99929 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00405 * 180.02562 * 15 14 13 18 18 N 1.31519 * 119.99944 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00207 * 179.97438 * 17 15 14 20 20 H 1.48491 * 109.46968 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.46846 * 120.00095 * 19 17 15 22 22 H 1.48499 * 109.47153 * 239.99532 * 19 17 15 23 23 H 1.08994 * 109.47243 * 295.94110 * 1 2 3 24 24 H 1.08998 * 109.46614 * 55.94052 * 1 2 3 25 25 H 1.08997 * 109.46803 * 175.94164 * 1 2 3 26 26 H 1.09006 * 109.47043 * 179.79225 * 3 2 1 27 27 H 1.08999 * 109.47438 * 299.78488 * 3 2 1 28 28 H 1.08999 * 109.47457 * 59.79133 * 3 2 1 29 29 H 0.96997 * 118.53971 * 181.68640 * 6 4 2 30 30 H 1.09004 * 109.37319 * 221.66026 * 7 6 4 31 31 H 1.09004 * 109.28375 * 101.95020 * 7 6 4 32 32 H 1.08994 * 109.59420 * 170.07169 * 8 7 6 33 33 H 1.09003 * 109.58866 * 290.52430 * 8 7 6 34 34 H 1.09008 * 109.47030 * 292.11687 * 10 9 2 35 35 H 1.08998 * 109.47593 * 52.11791 * 10 9 2 36 36 H 0.97001 * 120.00371 * 359.97438 * 13 11 10 37 37 H 1.08998 * 109.47400 * 300.00073 * 14 13 11 38 38 H 1.08997 * 109.47164 * 60.00045 * 14 13 11 39 39 H 0.96994 * 120.00032 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0378 1.4433 0.0000 4 6 2.0288 -0.7041 1.2301 5 8 1.9965 -0.1154 2.2899 6 7 2.5063 -1.9529 1.2053 7 6 2.6214 -2.7343 -0.0227 8 6 1.7374 -2.1285 -1.1145 9 7 2.0181 -0.6864 -1.2037 10 6 1.4241 -0.1084 -2.4165 11 6 2.0879 -0.7012 -3.6327 12 8 3.0425 -1.4380 -3.5038 13 7 1.6208 -0.4124 -4.8635 14 6 2.2665 -0.9883 -6.0457 15 6 1.5574 -0.5123 -7.2874 16 1 0.7106 0.1529 -7.2042 17 6 1.9895 -0.9261 -8.5295 18 7 3.0209 -1.7358 -8.6309 19 14 1.1100 -0.3367 -10.0685 20 1 -0.0099 0.5602 -9.6858 21 1 2.0648 0.4047 -10.9310 22 1 0.5765 -1.5060 -10.8123 23 1 -0.3633 0.4495 0.9241 24 1 -0.3632 0.5756 -0.8514 25 1 -0.3633 -1.0251 -0.0727 26 1 3.1279 1.4450 0.0037 27 1 1.6769 1.9555 -0.8919 28 1 1.6707 1.9577 0.8881 29 1 2.7893 -2.3575 2.0402 30 1 2.3060 -3.7597 0.1703 31 1 3.6595 -2.7318 -0.3550 32 1 1.9591 -2.6039 -2.0699 33 1 0.6882 -2.2817 -0.8621 34 1 0.3572 -0.3310 -2.4401 35 1 1.5698 0.9718 -2.4133 36 1 0.8571 0.1766 -4.9666 37 1 3.3096 -0.6738 -6.0795 38 1 2.2165 -2.0758 -5.9935 39 1 3.3251 -2.0266 -9.5048 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066529694.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:01 Heat of formation + Delta-G solvation = -89.562894 kcal Electronic energy + Delta-G solvation = -21235.168486 eV Core-core repulsion = 17983.729246 eV Total energy + Delta-G solvation = -3251.439240 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.05248 -40.38468 -38.35138 -36.39476 -36.05351 -34.29955 -32.93827 -30.68512 -29.19767 -28.41115 -27.54646 -25.02352 -23.79840 -23.41122 -21.25881 -19.14966 -19.07810 -18.55936 -18.03559 -17.15640 -17.05178 -16.57084 -16.37255 -15.94566 -15.92627 -15.32897 -15.10487 -14.83548 -14.34964 -14.17766 -14.03237 -13.89981 -13.43049 -13.22701 -12.97369 -12.86252 -12.74762 -12.67920 -12.36144 -12.31154 -12.19853 -12.15154 -11.42197 -10.92333 -10.78286 -10.62380 -10.13008 -9.75742 -9.40627 -8.26702 -6.42440 1.45573 1.46025 1.48724 1.59348 1.83751 2.17780 2.25145 2.43041 2.94218 3.08850 3.36508 3.75232 3.82285 3.89637 4.05420 4.11527 4.32141 4.34805 4.49166 4.58441 4.62774 4.80572 4.81783 4.86955 4.92612 5.10950 5.16356 5.24743 5.30043 5.52885 5.63458 5.70712 5.80649 5.89407 5.94150 6.19431 6.69646 6.99570 7.12324 7.27393 7.57385 8.85492 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.040563 B = 0.003782 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.118195 B = 7402.492579 C = 7774.189423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.093 3.907 3 C -0.128 4.128 4 C 0.530 3.470 5 O -0.586 6.586 6 N -0.709 5.709 7 C 0.120 3.880 8 C 0.026 3.974 9 N -0.521 5.521 10 C 0.042 3.958 11 C 0.497 3.503 12 O -0.581 6.581 13 N -0.709 5.709 14 C 0.269 3.731 15 C -0.553 4.553 16 H 0.084 0.916 17 C 0.004 3.996 18 N -0.931 5.931 19 Si 0.981 3.019 20 H -0.252 1.252 21 H -0.281 1.281 22 H -0.280 1.280 23 H 0.073 0.927 24 H 0.095 0.905 25 H 0.066 0.934 26 H 0.050 0.950 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.407 0.593 30 H 0.112 0.888 31 H 0.066 0.934 32 H 0.088 0.912 33 H 0.063 0.937 34 H 0.097 0.903 35 H 0.130 0.870 36 H 0.408 0.592 37 H -0.014 1.014 38 H -0.011 1.011 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.062 2.410 16.129 18.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.001 3.999 3 C -0.186 4.186 4 C 0.317 3.683 5 O -0.466 6.466 6 N -0.360 5.360 7 C -0.004 4.004 8 C -0.102 4.102 9 N -0.246 5.246 10 C -0.088 4.088 11 C 0.283 3.717 12 O -0.461 6.461 13 N -0.360 5.360 14 C 0.146 3.854 15 C -0.591 4.591 16 H 0.102 0.898 17 C -0.195 4.195 18 N -0.570 5.570 19 Si 0.805 3.195 20 H -0.176 1.176 21 H -0.207 1.207 22 H -0.206 1.206 23 H 0.092 0.908 24 H 0.114 0.886 25 H 0.084 0.916 26 H 0.069 0.931 27 H 0.106 0.894 28 H 0.093 0.907 29 H 0.243 0.757 30 H 0.130 0.870 31 H 0.085 0.915 32 H 0.106 0.894 33 H 0.081 0.919 34 H 0.114 0.886 35 H 0.148 0.852 36 H 0.244 0.756 37 H 0.004 0.996 38 H 0.007 0.993 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.830 2.234 16.398 17.903 hybrid contribution -0.682 -0.259 -0.739 1.038 sum -7.512 1.976 15.659 17.480 Atomic orbital electron populations 1.22418 0.92287 1.03573 1.04932 1.21236 0.95951 0.95947 0.86794 1.21768 1.01396 0.91744 1.03710 1.20212 0.76287 0.81674 0.90151 1.90707 1.58094 1.65510 1.32321 1.45573 1.63789 1.14561 1.12077 1.21562 1.00803 0.95443 0.82610 1.22649 0.98658 0.88256 1.00600 1.62324 1.58545 1.03350 1.00421 1.22087 0.98249 1.01918 0.86512 1.21170 0.84000 0.81233 0.85256 1.90636 1.29507 1.39030 1.86921 1.46168 1.34436 1.49662 1.05687 1.18496 0.92000 0.92193 0.82751 1.21671 1.16128 1.30388 0.90918 0.89771 1.26018 0.95625 0.94697 1.03177 1.70138 1.26652 1.34525 1.25684 0.85159 0.78508 0.78179 0.77668 1.17567 1.20723 1.20590 0.90791 0.88626 0.91553 0.93090 0.89395 0.90681 0.75669 0.86972 0.91550 0.89398 0.91925 0.88563 0.85227 0.75638 0.99646 0.99283 0.92359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.83 7.62 71.98 0.55 -2.28 16 2 C 0.09 2.01 0.64 2.64 0.00 2.01 16 3 C -0.13 -2.64 8.13 71.98 0.59 -2.05 16 4 C 0.53 13.36 6.62 87.68 0.58 13.94 16 5 O -0.59 -18.17 17.07 -3.03 -0.05 -18.22 16 6 N -0.71 -14.65 5.52 -466.07 -2.57 -17.22 16 7 C 0.12 2.32 7.39 86.47 0.64 2.96 16 8 C 0.03 0.60 5.10 86.24 0.44 1.04 16 9 N -0.52 -12.78 4.14 -855.47 -3.54 -16.33 16 10 C 0.04 0.99 4.44 85.56 0.38 1.37 16 11 C 0.50 17.87 7.28 87.66 0.64 18.51 16 12 O -0.58 -26.30 14.67 -3.03 -0.04 -26.34 16 13 N -0.71 -27.43 5.55 -466.80 -2.59 -30.02 16 14 C 0.27 14.06 5.43 85.63 0.46 14.52 16 15 C -0.55 -28.93 9.28 25.60 0.24 -28.70 16 16 H 0.08 3.95 7.60 -2.91 -0.02 3.93 16 17 C 0.00 0.23 5.46 84.65 0.46 0.70 16 18 N -0.93 -54.98 13.29 21.45 0.28 -54.69 16 19 Si 0.98 41.18 29.54 68.60 2.03 43.21 16 20 H -0.25 -9.71 7.11 99.48 0.71 -9.01 16 21 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 22 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 23 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 24 H 0.10 1.18 6.73 -2.39 -0.02 1.17 16 25 H 0.07 1.04 6.32 -2.39 -0.02 1.02 16 26 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 27 H 0.09 1.41 6.37 -2.39 -0.02 1.40 16 28 H 0.07 1.52 7.82 -2.39 -0.02 1.50 16 29 H 0.41 7.04 8.84 -92.71 -0.82 6.22 16 30 H 0.11 1.46 8.14 -2.38 -0.02 1.44 16 31 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.09 2.54 5.92 -2.39 -0.01 2.53 16 33 H 0.06 1.18 6.17 -2.39 -0.01 1.16 16 34 H 0.10 1.69 6.77 -2.38 -0.02 1.67 16 35 H 0.13 2.48 6.14 -2.39 -0.01 2.47 16 36 H 0.41 12.69 8.32 -92.71 -0.77 11.92 16 37 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 38 H -0.01 -0.64 8.14 -2.39 -0.02 -0.65 16 39 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 Total: -1.00 -73.70 312.65 -2.02 -75.72 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: -0.50 Total: 21.87 kcal Atomic # 6 Polarization: 17.05 SS G_CDS: 4.98 Total: 22.02 kcal Atomic # 7 Polarization: -109.84 SS G_CDS: -8.42 Total: -118.26 kcal Atomic # 8 Polarization: -44.47 SS G_CDS: -0.10 Total: -44.57 kcal Atomic # 14 Polarization: 41.18 SS G_CDS: 2.03 Total: 43.21 kcal Total: -73.70 -2.02 -75.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066529694.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.844 kcal (2) G-P(sol) polarization free energy of solvation -73.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds