Wall clock time and date at job start Mon Mar 30 2020 00:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50701 * 109.47212 * 2 1 4 4 N 1.31130 * 126.54970 * 89.71287 * 3 2 1 5 5 C 1.34495 * 105.61689 * 179.91883 * 4 3 2 6 6 C 1.50697 * 126.28834 * 180.12736 * 5 4 3 7 7 N 1.46893 * 109.47305 * 270.23442 * 6 5 4 8 8 C 1.46901 * 110.99919 * 293.95884 * 7 6 5 9 9 C 1.50699 * 109.47488 * 69.99909 * 8 7 6 10 10 H 1.07997 * 119.99574 * 0.02562 * 9 8 7 11 11 C 1.37877 * 120.00133 * 179.97438 * 9 8 7 12 12 N 1.31515 * 119.99882 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 119.99887 * 179.97438 * 11 9 8 14 14 H 1.48497 * 109.46876 * 0.02562 * 13 11 9 15 15 H 1.48497 * 109.46874 * 120.00303 * 13 11 9 16 16 H 1.48498 * 109.46911 * 239.99878 * 13 11 9 17 17 C 1.46898 * 111.00094 * 170.00351 * 7 6 5 18 18 C 1.53004 * 109.46878 * 190.00129 * 17 7 6 19 19 O 1.42905 * 109.47314 * 65.00167 * 18 17 7 20 20 C 1.42894 * 113.99996 * 179.97438 * 19 18 17 21 21 N 1.29951 * 107.42004 * 0.34813 * 5 4 3 22 22 O 1.21293 * 110.25189 * 359.77930 * 21 5 4 23 23 H 1.08998 * 109.47533 * 59.99628 * 1 2 3 24 24 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47153 * 299.99998 * 1 2 3 26 26 H 1.09002 * 109.47153 * 240.00002 * 2 1 3 27 27 H 1.09001 * 109.46832 * 120.00193 * 2 1 3 28 28 H 1.08994 * 109.47153 * 30.23908 * 6 5 4 29 29 H 1.09003 * 109.46924 * 150.23844 * 6 5 4 30 30 H 1.09008 * 109.46729 * 190.00158 * 8 7 6 31 31 H 1.09000 * 109.47158 * 309.99151 * 8 7 6 32 32 H 0.97001 * 120.00121 * 179.97438 * 12 11 9 33 33 H 1.09005 * 109.47116 * 309.99936 * 17 7 6 34 34 H 1.08993 * 109.47333 * 70.00202 * 17 7 6 35 35 H 1.09006 * 109.46918 * 184.99478 * 18 17 7 36 36 H 1.08998 * 109.47137 * 304.99607 * 18 17 7 37 37 H 1.09002 * 109.46998 * 59.99833 * 20 19 18 38 38 H 1.09002 * 109.47199 * 179.97438 * 20 19 18 39 39 H 1.09001 * 109.47367 * 299.99482 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2877 2.1588 1.0534 5 6 2.7104 3.3417 0.5729 6 6 3.1322 4.5365 1.3888 7 7 1.9634 5.3860 1.6534 8 6 1.4489 5.9757 0.4102 9 6 0.8184 4.8980 -0.4337 10 1 0.8013 3.8772 -0.0815 11 6 0.2626 5.2154 -1.6549 12 7 0.2822 6.4588 -2.0830 13 14 -0.5183 3.8794 -2.7012 14 1 -0.4119 2.5753 -1.9990 15 1 -1.9495 4.2028 -2.9296 16 1 0.1853 3.7984 -4.0064 17 6 2.2824 6.4285 2.6380 18 6 0.9942 7.1298 3.0736 19 8 0.1564 6.2010 3.7646 20 6 -1.0792 6.7580 4.2172 21 7 2.6839 3.2667 -0.7242 22 8 2.2972 2.1714 -1.0735 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3635 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.5577 4.1992 2.3339 29 1 3.8790 5.1077 0.8373 30 1 0.7025 6.7334 0.6492 31 1 2.2694 6.4353 -0.1407 32 1 -0.1086 6.6821 -2.9423 33 1 2.7604 5.9744 3.5061 34 1 2.9588 7.1565 2.1901 35 1 1.2389 7.9605 3.7357 36 1 0.4711 7.5073 2.1951 37 1 -1.6456 7.1281 3.3626 38 1 -1.6575 5.9900 4.7309 39 1 -0.8773 7.5808 4.9031 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072689423.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:52:50 Heat of formation + Delta-G solvation = 18.261398 kcal Electronic energy + Delta-G solvation = -21885.283492 eV Core-core repulsion = 18638.519864 eV Total energy + Delta-G solvation = -3246.763628 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -46.35670 -39.46279 -38.03210 -36.52516 -35.20995 -34.70723 -32.03490 -30.85842 -29.72766 -27.55780 -26.47401 -25.63736 -24.77504 -23.76572 -22.06207 -21.40986 -19.51225 -18.20420 -18.14854 -17.38284 -17.05976 -16.64636 -16.39960 -16.08671 -15.59554 -15.34739 -15.28106 -14.81912 -14.14607 -13.86473 -13.73009 -13.56563 -13.32078 -13.06541 -12.94811 -12.73452 -12.66664 -12.54730 -12.42909 -12.40385 -12.01093 -11.93448 -11.68564 -11.57949 -11.38304 -10.72063 -10.45557 -10.19711 -9.10918 -8.22788 -6.21715 0.55783 1.26184 1.29625 1.38685 1.50278 2.23830 2.35013 2.93255 2.97548 3.12611 3.26449 3.49397 4.03223 4.14751 4.24429 4.25524 4.28338 4.38397 4.44482 4.54519 4.55708 4.62152 4.67995 4.78680 4.86011 4.90007 4.94559 5.02692 5.08060 5.11286 5.17479 5.32687 5.37819 5.59692 6.01969 6.19556 6.34444 6.56543 6.79797 7.40324 7.56332 8.88818 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.014434 B = 0.008110 C = 0.006674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.337713 B = 3451.560457 C = 4194.162358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.021 4.021 3 C 0.147 3.853 4 N -0.489 5.489 5 C 0.176 3.824 6 C 0.158 3.842 7 N -0.536 5.536 8 C 0.206 3.794 9 C -0.484 4.484 10 H 0.051 0.949 11 C 0.013 3.987 12 N -0.932 5.932 13 Si 0.934 3.066 14 H -0.256 1.256 15 H -0.282 1.282 16 H -0.280 1.280 17 C 0.057 3.943 18 C 0.069 3.931 19 O -0.400 6.400 20 C 0.028 3.972 21 N -0.359 5.359 22 O 0.062 5.938 23 H 0.038 0.962 24 H 0.111 0.889 25 H 0.044 0.956 26 H 0.126 0.874 27 H 0.130 0.870 28 H 0.115 0.885 29 H 0.047 0.953 30 H 0.014 0.986 31 H -0.037 1.037 32 H 0.260 0.740 33 H 0.099 0.901 34 H 0.053 0.947 35 H 0.080 0.920 36 H 0.028 0.972 37 H 0.027 0.973 38 H 0.093 0.907 39 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.407 -8.455 8.836 12.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.059 4.059 3 C -0.073 4.073 4 N -0.223 5.223 5 C -0.097 4.097 6 C 0.029 3.971 7 N -0.262 5.262 8 C 0.080 3.920 9 C -0.523 4.523 10 H 0.070 0.930 11 C -0.184 4.184 12 N -0.574 5.574 13 Si 0.759 3.241 14 H -0.180 1.180 15 H -0.208 1.208 16 H -0.206 1.206 17 C -0.071 4.071 18 C -0.007 4.007 19 O -0.319 6.319 20 C -0.068 4.068 21 N -0.065 5.065 22 O 0.001 5.999 23 H 0.057 0.943 24 H 0.130 0.870 25 H 0.064 0.936 26 H 0.144 0.856 27 H 0.148 0.852 28 H 0.133 0.867 29 H 0.065 0.935 30 H 0.032 0.968 31 H -0.019 1.019 32 H 0.069 0.931 33 H 0.117 0.883 34 H 0.071 0.929 35 H 0.098 0.902 36 H 0.046 0.954 37 H 0.045 0.955 38 H 0.112 0.888 39 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.331 -8.061 8.865 12.207 hybrid contribution -0.277 0.786 -1.473 1.692 sum 2.055 -7.275 7.392 10.573 Atomic orbital electron populations 1.21822 0.93244 1.04439 1.01413 1.20420 0.96578 0.81161 1.07750 1.29681 0.97634 0.99636 0.80373 1.71676 1.18157 1.02769 1.29658 1.25287 1.00907 0.95679 0.87812 1.20122 0.91350 0.88030 0.97627 1.61961 1.29886 1.21988 1.12368 1.19500 0.92974 0.94242 0.85234 1.21400 1.34742 0.94572 1.01593 0.93040 1.25540 0.96913 0.97023 0.98974 1.70051 1.47411 1.18946 1.20982 0.85843 0.77954 0.80901 0.79352 1.18024 1.20757 1.20605 1.22181 0.95669 0.93506 0.95717 1.22602 0.91297 0.91717 0.95115 1.87942 1.30816 1.38195 1.74958 1.22837 0.85743 0.99974 0.98235 1.74812 1.16712 0.98106 1.16840 1.85228 1.60311 1.17499 1.36848 0.94281 0.87023 0.93644 0.85604 0.85228 0.86696 0.93534 0.96793 1.01909 0.93130 0.88301 0.92944 0.90193 0.95411 0.95459 0.88810 0.92179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.54 9.89 71.98 0.71 -2.83 16 2 C -0.02 -0.46 6.56 29.85 0.20 -0.27 16 3 C 0.15 5.32 7.56 88.38 0.67 5.99 16 4 N -0.49 -20.12 11.52 -303.20 -3.49 -23.62 16 5 C 0.18 7.92 5.23 138.46 0.72 8.64 16 6 C 0.16 6.48 5.59 85.56 0.48 6.95 16 7 N -0.54 -24.09 4.51 -905.38 -4.08 -28.17 16 8 C 0.21 11.26 4.60 85.56 0.39 11.65 16 9 C -0.48 -28.31 6.34 25.60 0.16 -28.15 16 10 H 0.05 3.04 4.70 -2.91 -0.01 3.02 16 11 C 0.01 0.78 5.46 84.65 0.46 1.24 16 12 N -0.93 -58.10 13.29 21.45 0.28 -57.81 16 13 Si 0.93 46.98 29.54 68.60 2.03 49.01 16 14 H -0.26 -12.20 6.88 99.48 0.68 -11.52 16 15 H -0.28 -13.79 7.11 99.48 0.71 -13.09 16 16 H -0.28 -13.91 7.11 99.48 0.71 -13.20 16 17 C 0.06 1.99 5.34 86.31 0.46 2.45 16 18 C 0.07 2.39 6.02 71.98 0.43 2.83 16 19 O -0.40 -14.77 10.65 -148.98 -1.59 -16.36 16 20 C 0.03 0.80 11.01 113.37 1.25 2.05 16 21 N -0.36 -17.32 9.43 -60.33 -0.57 -17.88 16 22 O 0.06 2.68 11.15 74.87 0.83 3.52 16 23 H 0.04 1.10 7.92 -2.39 -0.02 1.08 16 24 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.13 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.13 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.12 3.92 7.93 -2.39 -0.02 3.90 16 29 H 0.05 1.89 8.01 -2.39 -0.02 1.87 16 30 H 0.01 0.82 5.91 -2.38 -0.01 0.81 16 31 H -0.04 -2.18 7.99 -2.39 -0.02 -2.20 16 32 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 33 H 0.10 2.95 7.93 -2.38 -0.02 2.93 16 34 H 0.05 1.72 8.12 -2.39 -0.02 1.70 16 35 H 0.08 2.12 8.14 -2.38 -0.02 2.10 16 36 H 0.03 1.12 6.12 -2.39 -0.01 1.11 16 37 H 0.03 0.81 8.14 -2.39 -0.02 0.80 16 38 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 39 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -76.47 322.84 0.37 -76.10 By element: Atomic # 1 Polarization: 3.64 SS G_CDS: 1.02 Total: 4.65 kcal Atomic # 6 Polarization: 4.63 SS G_CDS: 5.94 Total: 10.57 kcal Atomic # 7 Polarization: -119.63 SS G_CDS: -7.86 Total: -127.48 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: -0.75 Total: -12.84 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.01 kcal Total: -76.47 0.37 -76.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072689423.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.359 kcal (2) G-P(sol) polarization free energy of solvation -76.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds