Wall clock time and date at job start Mon Mar 30 2020 00:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46014 * 118.53399 * 2 1 4 4 C 1.52979 * 110.03916 * 161.81665 * 3 2 1 5 5 N 1.47196 * 108.73150 * 50.29273 * 4 3 2 6 6 C 1.46899 * 111.00033 * 54.36479 * 5 4 3 7 7 C 1.50705 * 109.47319 * 55.20831 * 6 5 4 8 8 O 1.21295 * 119.99603 * 7.20026 * 7 6 5 9 9 N 1.34779 * 120.00125 * 187.19565 * 7 6 5 10 10 C 1.37089 * 119.99866 * 180.02562 * 9 7 6 11 11 H 1.08011 * 120.00269 * 0.02562 * 10 9 7 12 12 C 1.38952 * 119.99955 * 180.02562 * 10 9 7 13 13 N 1.31402 * 120.00085 * 359.97438 * 12 10 9 14 14 Si 1.86805 * 119.99947 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47089 * 60.00134 * 14 12 10 16 16 H 1.48498 * 109.46815 * 179.97438 * 14 12 10 17 17 H 1.48493 * 109.47091 * 300.00156 * 14 12 10 18 18 C 1.46898 * 110.17048 * 290.99830 * 5 4 3 19 19 C 1.52993 * 109.38720 * 290.14045 * 18 5 4 20 20 C 1.53000 * 109.38284 * 170.45110 * 18 5 4 21 21 C 1.33711 * 118.53532 * 179.97438 * 2 1 3 22 22 O 1.21273 * 118.62886 * 1.68558 * 21 2 1 23 23 H 1.09000 * 109.47091 * 180.02562 * 1 2 3 24 24 H 1.09008 * 109.47130 * 300.02043 * 1 2 3 25 25 H 1.09000 * 109.47645 * 60.02443 * 1 2 3 26 26 H 1.08997 * 109.37027 * 281.99218 * 3 2 1 27 27 H 1.08999 * 109.37685 * 41.64094 * 3 2 1 28 28 H 1.09004 * 109.59257 * 170.06236 * 4 3 2 29 29 H 1.08998 * 109.60005 * 290.36621 * 4 3 2 30 30 H 1.08995 * 109.47260 * 175.21299 * 6 5 4 31 31 H 1.08999 * 109.47299 * 295.21399 * 6 5 4 32 32 H 0.96999 * 120.00117 * 0.02562 * 9 7 6 33 33 H 0.96998 * 120.00006 * 180.02562 * 13 12 10 34 34 H 1.09001 * 109.47039 * 180.51886 * 19 18 5 35 35 H 1.08996 * 109.47154 * 300.52136 * 19 18 5 36 36 H 1.09002 * 109.47286 * 60.52113 * 19 18 5 37 37 H 1.08994 * 109.47771 * 299.48059 * 20 18 5 38 38 H 1.09000 * 109.47189 * 59.48297 * 20 18 5 39 39 H 1.09002 * 109.46851 * 179.48031 * 20 18 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1625 1.2828 0.0000 4 6 3.6124 1.0911 0.4485 5 7 4.2095 -0.0015 -0.3366 6 6 4.0681 0.2472 -1.7774 7 6 4.6604 1.5911 -2.1158 8 8 5.2668 2.2164 -1.2717 9 7 4.5163 2.0980 -3.3562 10 6 5.0555 3.3202 -3.6641 11 1 5.5962 3.8768 -2.9127 12 6 4.9066 3.8431 -4.9428 13 7 4.2493 3.1659 -5.8571 14 14 5.6407 5.5089 -5.3621 15 1 7.1114 5.4664 -5.1610 16 1 5.3448 5.8375 -6.7797 17 1 5.0502 6.5465 -4.4792 18 6 3.6018 -1.2853 0.0382 19 6 4.0476 -1.6648 1.4517 20 6 4.0559 -2.3678 -0.9431 21 6 2.1037 -1.1747 0.0005 22 8 1.4466 -2.1934 -0.0303 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5142 0.8899 25 1 -0.3634 0.5134 -0.8902 26 1 2.1475 1.7024 -1.0058 27 1 1.6601 1.9676 0.6832 28 1 4.1721 2.0110 0.2791 29 1 3.6369 0.8383 1.5085 30 1 4.5911 -0.5307 -2.3335 31 1 3.0117 0.2379 -2.0458 32 1 4.0311 1.5981 -4.0312 33 1 4.1456 3.5308 -6.7499 34 1 3.6047 -2.6218 1.7276 35 1 5.1342 -1.7455 1.4806 36 1 3.7214 -0.8976 2.1539 37 1 3.7357 -2.1025 -1.9506 38 1 5.1425 -2.4492 -0.9169 39 1 3.6130 -3.3229 -0.6608 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000129860815.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:04 Heat of formation + Delta-G solvation = -44.571341 kcal Electronic energy + Delta-G solvation = -22065.232911 eV Core-core repulsion = 18815.744651 eV Total energy + Delta-G solvation = -3249.488260 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.18420 -38.48357 -36.81164 -35.74304 -34.02865 -31.88220 -31.36522 -29.75159 -27.49393 -26.98576 -26.44161 -24.34122 -22.59878 -21.91455 -19.39507 -18.11497 -17.47470 -17.25173 -16.51672 -15.97970 -15.86599 -14.99998 -14.78169 -14.49529 -13.96419 -13.76699 -13.70084 -13.22337 -12.95796 -12.78024 -12.32575 -12.20695 -12.14404 -11.97545 -11.82777 -11.68266 -11.61670 -11.45531 -11.16994 -10.81654 -10.58704 -10.48215 -10.27681 -10.07700 -9.52004 -8.72147 -8.43365 -8.06708 -7.90625 -6.48200 -3.89617 2.63908 2.94988 3.15202 3.22378 3.25922 3.78205 3.86933 4.17200 4.42984 4.79987 4.93983 5.01443 5.04586 5.19262 5.21662 5.35414 5.41179 5.47974 5.58498 5.71128 5.73526 5.77888 5.80765 5.86244 5.96116 6.00596 6.14456 6.17054 6.22258 6.31620 6.47476 7.08953 7.15688 7.42365 7.48728 7.98167 8.16524 8.53164 9.10327 9.45693 9.96409 10.69060 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.028316 B = 0.005137 C = 0.004954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.601845 B = 5449.564323 C = 5650.344751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.608 5.608 3 C 0.073 3.927 4 C 0.023 3.977 5 N -0.492 5.492 6 C 0.034 3.966 7 C 0.442 3.558 8 O -0.578 6.578 9 N -0.558 5.558 10 C -0.302 4.302 11 H 0.104 0.896 12 C 0.024 3.976 13 N -0.899 5.899 14 Si 0.931 3.069 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.273 1.273 18 C 0.094 3.906 19 C -0.127 4.127 20 C -0.135 4.135 21 C 0.494 3.506 22 O -0.553 6.553 23 H 0.088 0.912 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.073 0.927 27 H 0.078 0.922 28 H 0.140 0.860 29 H 0.077 0.923 30 H 0.097 0.903 31 H 0.047 0.953 32 H 0.392 0.608 33 H 0.273 0.727 34 H 0.065 0.935 35 H 0.079 0.921 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.076 0.924 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.685 -6.569 9.654 12.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.341 5.341 3 C -0.051 4.051 4 C -0.105 4.105 5 N -0.216 5.216 6 C -0.097 4.097 7 C 0.228 3.772 8 O -0.464 6.464 9 N -0.194 5.194 10 C -0.431 4.431 11 H 0.122 0.878 12 C -0.178 4.178 13 N -0.540 5.540 14 Si 0.758 3.242 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.199 1.199 18 C 0.001 3.999 19 C -0.185 4.185 20 C -0.193 4.193 21 C 0.281 3.719 22 O -0.431 6.431 23 H 0.106 0.894 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.091 0.909 27 H 0.097 0.903 28 H 0.157 0.843 29 H 0.095 0.905 30 H 0.115 0.885 31 H 0.065 0.935 32 H 0.225 0.775 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.095 0.905 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -4.140 -6.646 10.085 12.768 hybrid contribution -1.038 0.738 -1.031 1.639 sum -5.178 -5.908 9.054 11.987 Atomic orbital electron populations 1.21732 0.79993 1.04189 1.01262 1.47490 1.07286 1.06470 1.72865 1.22264 0.95280 0.84504 1.03033 1.23060 0.90833 0.99091 0.97494 1.62354 1.54668 1.00356 1.04193 1.22078 0.99675 0.98731 0.89171 1.19591 0.86272 0.87484 0.83902 1.90414 1.46142 1.62068 1.47746 1.41866 1.48723 1.18804 1.09992 1.19659 1.31849 0.94696 0.96944 0.87796 1.25281 0.97161 0.99915 0.95420 1.69600 1.41044 1.38916 1.04436 0.85910 0.79510 0.81461 0.77306 1.19815 1.20967 1.19876 1.21350 0.87032 0.92575 0.98948 1.21747 1.02893 1.01287 0.92552 1.21873 1.02371 0.97141 0.97927 1.21275 0.92148 0.83001 0.75457 1.90625 1.67446 1.34521 1.50485 0.89360 0.92371 0.92224 0.90893 0.90320 0.84280 0.90505 0.88479 0.93465 0.77460 0.91700 0.91564 0.90230 0.92371 0.92075 0.90470 0.90941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.87 10.55 59.85 0.63 1.50 16 2 N -0.61 -8.82 3.03 -182.47 -0.55 -9.37 16 3 C 0.07 1.04 5.69 -4.32 -0.02 1.02 16 4 C 0.02 0.35 5.35 -3.67 -0.02 0.33 16 5 N -0.49 -7.95 4.52 -221.76 -1.00 -8.95 16 6 C 0.03 0.61 4.03 -4.97 -0.02 0.59 16 7 C 0.44 9.80 6.99 -10.98 -0.08 9.73 16 8 O -0.58 -14.31 13.39 5.54 0.07 -14.23 16 9 N -0.56 -13.54 5.29 -10.96 -0.06 -13.60 16 10 C -0.30 -8.06 9.68 -14.94 -0.14 -8.20 16 11 H 0.10 2.88 7.16 -52.48 -0.38 2.51 16 12 C 0.02 0.63 5.50 -17.47 -0.10 0.54 16 13 N -0.90 -23.87 13.05 55.50 0.72 -23.14 16 14 Si 0.93 20.40 29.55 -169.99 -5.02 15.38 16 15 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 16 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 17 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 18 C 0.09 1.36 0.64 -132.97 -0.09 1.28 16 19 C -0.13 -1.55 8.44 37.15 0.31 -1.24 16 20 C -0.14 -1.81 7.45 37.16 0.28 -1.53 16 21 C 0.49 7.83 5.70 -11.67 -0.07 7.76 16 22 O -0.55 -9.94 15.31 5.56 0.09 -9.86 16 23 H 0.09 1.17 6.67 -51.93 -0.35 0.82 16 24 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.07 1.18 6.67 -51.93 -0.35 0.83 16 27 H 0.08 0.94 8.12 -51.93 -0.42 0.52 16 28 H 0.14 2.53 5.40 -51.93 -0.28 2.25 16 29 H 0.08 1.04 6.25 -51.93 -0.32 0.71 16 30 H 0.10 1.62 6.33 -51.93 -0.33 1.29 16 31 H 0.05 0.83 6.03 -51.93 -0.31 0.51 16 32 H 0.39 9.29 7.90 -40.82 -0.32 8.96 16 33 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.06 0.69 6.48 -51.93 -0.34 0.35 16 37 H 0.06 0.84 6.39 -51.93 -0.33 0.51 16 38 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.07 0.93 7.82 -51.93 -0.41 0.53 16 LS Contribution 305.72 15.07 4.61 4.61 Total: -1.00 -30.23 305.72 -5.84 -36.07 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -5.38 Total: 11.32 kcal Atomic # 6 Polarization: 11.08 SS G_CDS: 0.69 Total: 11.77 kcal Atomic # 7 Polarization: -54.17 SS G_CDS: -0.89 Total: -55.06 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: 0.16 Total: -24.09 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.23 -5.84 -36.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129860815.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.499 kcal (2) G-P(sol) polarization free energy of solvation -30.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds