Wall clock time and date at job start Mon Mar 30 2020 01:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.51982 * 2 1 4 4 C 1.53125 * 109.57244 * 120.15515 * 2 1 3 5 5 C 1.53043 * 109.27590 * 177.59055 * 4 2 1 6 6 N 1.46844 * 109.52337 * 300.82382 * 5 4 2 7 7 C 1.46901 * 110.99564 * 185.84036 * 6 5 4 8 8 C 1.50697 * 109.47177 * 300.38101 * 7 6 5 9 9 O 1.21295 * 120.00147 * 354.48543 * 8 7 6 10 10 N 1.34778 * 120.00029 * 174.47545 * 8 7 6 11 11 C 1.37093 * 120.00248 * 180.02562 * 10 8 7 12 12 H 1.08005 * 120.00085 * 359.72239 * 11 10 8 13 13 C 1.38948 * 120.00291 * 180.02562 * 11 10 8 14 14 N 1.31415 * 120.00424 * 179.72482 * 13 11 10 15 15 Si 1.86801 * 119.99929 * 359.71650 * 13 11 10 16 16 H 1.48499 * 109.47040 * 90.00535 * 15 13 11 17 17 H 1.48507 * 109.47207 * 210.00263 * 15 13 11 18 18 H 1.48501 * 109.47254 * 330.00648 * 15 13 11 19 19 C 1.46840 * 111.20103 * 61.74222 * 6 5 4 20 20 H 1.09004 * 109.46320 * 58.26906 * 19 6 5 21 21 C 1.50697 * 109.46493 * 178.23919 * 19 6 5 22 22 N 1.34775 * 120.00175 * 200.00177 * 21 19 6 23 23 O 1.21281 * 120.00091 * 19.99823 * 21 19 6 24 24 C 1.53033 * 109.52425 * 298.26039 * 19 6 5 25 25 H 1.08997 * 109.46709 * 180.12425 * 1 2 3 26 26 H 1.08996 * 109.46986 * 300.12718 * 1 2 3 27 27 H 1.09004 * 109.46859 * 60.12654 * 1 2 3 28 28 H 1.08996 * 109.50301 * 297.53407 * 4 2 1 29 29 H 1.08997 * 109.49783 * 57.65376 * 4 2 1 30 30 H 1.08998 * 109.46091 * 180.80325 * 5 4 2 31 31 H 1.09000 * 109.45671 * 60.83931 * 5 4 2 32 32 H 1.08999 * 109.46852 * 180.38307 * 7 6 5 33 33 H 1.08997 * 109.47170 * 60.38415 * 7 6 5 34 34 H 0.97004 * 120.00021 * 359.97438 * 10 8 7 35 35 H 0.96998 * 120.00363 * 179.97438 * 14 13 11 36 36 H 0.96998 * 120.00426 * 359.97438 * 22 21 19 37 37 H 0.97002 * 119.99921 * 180.02562 * 22 21 19 38 38 H 1.09001 * 109.50554 * 179.12293 * 24 19 6 39 39 H 1.09005 * 109.50363 * 299.19488 * 24 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0430 -0.7248 1.2475 5 6 3.5722 -0.7735 1.2105 6 7 4.0116 -1.4766 -0.0014 7 6 5.4686 -1.6642 -0.0021 8 6 6.1481 -0.3205 0.0594 9 8 5.4888 0.6959 -0.0010 10 7 7.4883 -0.2480 0.1819 11 6 8.1064 0.9744 0.2384 12 1 7.5198 1.8794 0.1803 13 6 9.4882 1.0491 0.3641 14 7 10.0812 2.2208 0.4128 15 14 10.5029 -0.5161 0.4640 16 1 10.8991 -0.9373 -0.9038 17 1 11.7203 -0.2658 1.2769 18 1 9.6962 -1.5895 1.0983 19 6 3.5710 -0.7732 -1.2127 20 1 3.9666 0.2425 -1.2071 21 6 4.0784 -1.5027 -2.4298 22 7 4.1587 -0.8638 -3.6137 23 8 4.4147 -2.6648 -2.3439 24 6 2.0418 -0.7243 -1.2481 25 1 -0.3632 -1.0277 0.0022 26 1 -0.3633 0.5158 0.8888 27 1 -0.3633 0.5119 -0.8912 28 1 1.7174 -0.1892 2.1392 29 1 1.6469 -1.7400 1.2671 30 1 3.9401 -1.3015 2.0903 31 1 3.9678 0.2421 1.2048 32 1 5.7679 -2.1812 -0.9138 33 1 5.7589 -2.2582 0.8644 34 1 8.0155 -1.0608 0.2307 35 1 11.0458 2.2729 0.5009 36 1 3.8895 0.0656 -3.6826 37 1 4.4850 -1.3335 -4.3972 38 1 1.7153 -0.1885 -2.1394 39 1 1.6457 -1.7396 -1.2684 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000249565784.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:12 Heat of formation + Delta-G solvation = -71.805386 kcal Electronic energy + Delta-G solvation = -21896.040650 eV Core-core repulsion = 18645.371434 eV Total energy + Delta-G solvation = -3250.669217 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.39587 -38.40789 -37.44784 -34.53165 -33.68544 -33.39870 -31.75357 -30.74339 -29.06722 -26.11707 -24.19812 -23.77558 -22.12934 -20.14039 -19.63897 -19.40401 -18.32939 -17.09515 -16.58016 -15.89771 -15.34149 -15.23150 -14.81684 -14.49183 -14.19475 -13.91436 -13.56911 -13.43118 -13.33341 -12.80029 -12.63913 -12.25829 -12.01938 -11.90315 -11.58046 -11.31037 -11.23535 -10.85804 -10.64820 -10.54027 -10.49054 -10.11325 -10.05157 -9.57100 -9.45762 -9.40774 -9.28347 -8.22726 -7.47319 -6.38072 -3.88979 2.84852 3.01438 3.06059 3.13372 3.61158 3.65168 4.06117 4.31262 4.66660 4.83852 4.91199 4.96906 5.17342 5.27396 5.38079 5.58291 5.62953 5.73946 5.76669 5.82842 5.83915 5.87942 5.90655 6.13017 6.18880 6.21739 6.24402 6.32886 6.41858 6.68977 6.91889 7.20947 7.34653 7.50755 7.57004 8.08065 8.48749 8.51396 8.87306 9.36275 9.74140 10.74556 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.024128 B = 0.005659 C = 0.005190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.217771 B = 4946.272959 C = 5393.791752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 H 0.073 0.927 4 C -0.107 4.107 5 C 0.037 3.963 6 N -0.489 5.489 7 C 0.026 3.974 8 C 0.415 3.585 9 O -0.582 6.582 10 N -0.582 5.582 11 C -0.308 4.308 12 H 0.119 0.881 13 C 0.044 3.956 14 N -0.878 5.878 15 Si 0.878 3.122 16 H -0.270 1.270 17 H -0.275 1.275 18 H -0.268 1.268 19 C 0.050 3.950 20 H 0.105 0.895 21 C 0.525 3.475 22 N -0.856 5.856 23 O -0.535 6.535 24 C -0.095 4.095 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.107 0.893 33 H 0.090 0.910 34 H 0.372 0.628 35 H 0.274 0.726 36 H 0.401 0.599 37 H 0.398 0.602 38 H 0.065 0.935 39 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.325 -6.272 -3.351 15.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 H 0.092 0.908 4 C -0.145 4.145 5 C -0.091 4.091 6 N -0.213 5.213 7 C -0.105 4.105 8 C 0.201 3.799 9 O -0.468 6.468 10 N -0.219 5.219 11 C -0.437 4.437 12 H 0.137 0.863 13 C -0.160 4.160 14 N -0.518 5.518 15 Si 0.704 3.296 16 H -0.195 1.195 17 H -0.201 1.201 18 H -0.193 1.193 19 C -0.061 4.061 20 H 0.122 0.878 21 C 0.310 3.690 22 N -0.419 5.419 23 O -0.411 6.411 24 C -0.133 4.133 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.125 0.875 33 H 0.108 0.892 34 H 0.205 0.795 35 H 0.085 0.915 36 H 0.229 0.771 37 H 0.228 0.772 38 H 0.083 0.917 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.608 -6.688 -3.109 16.365 hybrid contribution 1.572 -0.036 -0.287 1.599 sum -13.036 -6.724 -3.396 15.056 Atomic orbital electron populations 1.21802 0.95281 1.01605 1.01418 1.21151 0.95117 0.99879 0.94903 0.90819 1.21620 0.95375 1.00504 0.97033 1.22362 0.94897 1.00281 0.91530 1.62184 1.10094 1.47984 1.01023 1.22349 0.87767 0.95415 1.05018 1.21163 0.82903 0.91654 0.84190 1.90402 1.63357 1.37099 1.55952 1.42409 1.06416 1.08290 1.64795 1.19445 0.91010 0.85463 1.47748 0.86322 1.25064 0.96514 0.97091 0.97323 1.69622 1.10586 1.23061 1.48500 0.86689 0.80902 0.82930 0.79074 1.19520 1.20054 1.19302 1.21838 0.96339 0.99268 0.88696 0.87775 1.20685 0.76641 0.86957 0.84756 1.43867 1.69866 1.16768 1.11440 1.90669 1.48376 1.16922 1.85101 1.21534 0.92414 1.01384 0.97997 0.92778 0.92728 0.92926 0.91767 0.91661 0.91309 0.90521 0.87516 0.89180 0.79533 0.91533 0.77072 0.77175 0.91658 0.91089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 9.21 37.16 0.34 -1.03 16 2 C -0.09 -1.11 2.79 -90.50 -0.25 -1.36 16 3 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 4 C -0.11 -1.38 5.38 -26.64 -0.14 -1.53 16 5 C 0.04 0.59 5.00 -3.83 -0.02 0.57 16 6 N -0.49 -8.38 4.46 -229.52 -1.02 -9.40 16 7 C 0.03 0.49 5.41 -4.98 -0.03 0.46 16 8 C 0.41 9.30 7.18 -10.99 -0.08 9.22 16 9 O -0.58 -14.28 11.22 5.54 0.06 -14.21 16 10 N -0.58 -13.94 5.09 -10.96 -0.06 -13.99 16 11 C -0.31 -8.59 10.16 -14.94 -0.15 -8.74 16 12 H 0.12 3.75 7.39 -52.48 -0.39 3.37 16 13 C 0.04 1.19 5.50 -17.47 -0.10 1.09 16 14 N -0.88 -25.39 13.96 55.50 0.77 -24.62 16 15 Si 0.88 19.55 27.73 -169.99 -4.71 14.83 16 16 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 17 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 18 H -0.27 -5.52 6.53 56.52 0.37 -5.15 16 19 C 0.05 0.80 1.85 -68.88 -0.13 0.67 16 20 H 0.10 1.90 5.69 -51.93 -0.30 1.60 16 21 C 0.52 8.41 6.48 -10.99 -0.07 8.34 16 22 N -0.86 -10.23 8.87 31.22 0.28 -9.96 16 23 O -0.53 -10.19 15.40 5.56 0.09 -10.10 16 24 C -0.10 -1.21 4.64 -26.66 -0.12 -1.33 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.07 1.06 8.12 -51.93 -0.42 0.64 16 31 H 0.08 1.47 5.68 -51.93 -0.29 1.18 16 32 H 0.11 2.06 5.51 -51.93 -0.29 1.77 16 33 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 34 H 0.37 8.08 5.77 -40.82 -0.24 7.85 16 35 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.40 3.91 8.83 -40.82 -0.36 3.55 16 37 H 0.40 4.12 8.93 -40.82 -0.36 3.76 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 308.56 15.07 4.65 4.65 Total: -1.00 -32.48 308.56 -6.31 -38.79 By element: Atomic # 1 Polarization: 23.27 SS G_CDS: -5.62 Total: 17.65 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: -0.75 Total: 6.37 kcal Atomic # 7 Polarization: -57.94 SS G_CDS: -0.03 Total: -57.97 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: 0.15 Total: -24.32 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -4.71 Total: 14.83 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.48 -6.31 -38.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249565784.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.019 kcal (2) G-P(sol) polarization free energy of solvation -32.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds