Wall clock time and date at job start Mon Mar 30 2020 01:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.51982 * 2 1 4 4 C 1.53125 * 109.57244 * 120.15515 * 2 1 3 5 5 C 1.53043 * 109.27590 * 177.59055 * 4 2 1 6 6 N 1.46844 * 109.52337 * 300.82382 * 5 4 2 7 7 C 1.46901 * 110.99564 * 185.84036 * 6 5 4 8 8 C 1.50697 * 109.47177 * 300.38101 * 7 6 5 9 9 O 1.21295 * 120.00147 * 354.48543 * 8 7 6 10 10 N 1.34778 * 120.00029 * 174.47545 * 8 7 6 11 11 C 1.37093 * 120.00248 * 180.02562 * 10 8 7 12 12 H 1.08005 * 120.00085 * 359.72239 * 11 10 8 13 13 C 1.38948 * 120.00291 * 180.02562 * 11 10 8 14 14 N 1.31415 * 120.00424 * 179.72482 * 13 11 10 15 15 Si 1.86801 * 119.99929 * 359.71650 * 13 11 10 16 16 H 1.48499 * 109.47040 * 90.00535 * 15 13 11 17 17 H 1.48507 * 109.47207 * 210.00263 * 15 13 11 18 18 H 1.48501 * 109.47254 * 330.00648 * 15 13 11 19 19 C 1.46840 * 111.20103 * 61.74222 * 6 5 4 20 20 H 1.09004 * 109.46320 * 58.26906 * 19 6 5 21 21 C 1.50697 * 109.46493 * 178.23919 * 19 6 5 22 22 N 1.34775 * 120.00175 * 200.00177 * 21 19 6 23 23 O 1.21281 * 120.00091 * 19.99823 * 21 19 6 24 24 C 1.53033 * 109.52425 * 298.26039 * 19 6 5 25 25 H 1.08997 * 109.46709 * 180.12425 * 1 2 3 26 26 H 1.08996 * 109.46986 * 300.12718 * 1 2 3 27 27 H 1.09004 * 109.46859 * 60.12654 * 1 2 3 28 28 H 1.08996 * 109.50301 * 297.53407 * 4 2 1 29 29 H 1.08997 * 109.49783 * 57.65376 * 4 2 1 30 30 H 1.08998 * 109.46091 * 180.80325 * 5 4 2 31 31 H 1.09000 * 109.45671 * 60.83931 * 5 4 2 32 32 H 1.08999 * 109.46852 * 180.38307 * 7 6 5 33 33 H 1.08997 * 109.47170 * 60.38415 * 7 6 5 34 34 H 0.97004 * 120.00021 * 359.97438 * 10 8 7 35 35 H 0.96998 * 120.00363 * 179.97438 * 14 13 11 36 36 H 0.96998 * 120.00426 * 359.97438 * 22 21 19 37 37 H 0.97002 * 119.99921 * 180.02562 * 22 21 19 38 38 H 1.09001 * 109.50554 * 179.12293 * 24 19 6 39 39 H 1.09005 * 109.50363 * 299.19488 * 24 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0274 0.0000 4 6 2.0430 -0.7248 1.2475 5 6 3.5722 -0.7735 1.2105 6 7 4.0116 -1.4766 -0.0014 7 6 5.4686 -1.6642 -0.0021 8 6 6.1481 -0.3205 0.0594 9 8 5.4888 0.6959 -0.0010 10 7 7.4883 -0.2480 0.1819 11 6 8.1064 0.9744 0.2384 12 1 7.5198 1.8794 0.1803 13 6 9.4882 1.0491 0.3641 14 7 10.0812 2.2208 0.4128 15 14 10.5029 -0.5161 0.4640 16 1 10.8991 -0.9373 -0.9038 17 1 11.7203 -0.2658 1.2769 18 1 9.6962 -1.5895 1.0983 19 6 3.5710 -0.7732 -1.2127 20 1 3.9666 0.2425 -1.2071 21 6 4.0784 -1.5027 -2.4298 22 7 4.1587 -0.8638 -3.6137 23 8 4.4147 -2.6648 -2.3439 24 6 2.0418 -0.7243 -1.2481 25 1 -0.3632 -1.0277 0.0022 26 1 -0.3633 0.5158 0.8888 27 1 -0.3633 0.5119 -0.8912 28 1 1.7174 -0.1892 2.1392 29 1 1.6469 -1.7400 1.2671 30 1 3.9401 -1.3015 2.0903 31 1 3.9678 0.2421 1.2048 32 1 5.7679 -2.1812 -0.9138 33 1 5.7589 -2.2582 0.8644 34 1 8.0155 -1.0608 0.2307 35 1 11.0458 2.2729 0.5009 36 1 3.8895 0.0656 -3.6826 37 1 4.4850 -1.3335 -4.3972 38 1 1.7153 -0.1885 -2.1394 39 1 1.6457 -1.7396 -1.2684 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000249565784.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:11 Heat of formation + Delta-G solvation = -99.284574 kcal Electronic energy + Delta-G solvation = -21897.232237 eV Core-core repulsion = 18645.371434 eV Total energy + Delta-G solvation = -3251.860804 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.78123 -40.02214 -38.75837 -36.22266 -35.19438 -34.61746 -33.80808 -31.91041 -30.35307 -27.65792 -25.64097 -25.16530 -23.35782 -21.48264 -21.21291 -20.83668 -20.11396 -18.36239 -17.92821 -17.58664 -16.82279 -16.61951 -16.38369 -15.68706 -15.64193 -15.33682 -15.11776 -15.01345 -14.52913 -14.46165 -13.97740 -13.77656 -13.23251 -13.17946 -12.91984 -12.69146 -12.46959 -12.42486 -12.09348 -12.04289 -11.82446 -11.51511 -11.41435 -11.17219 -11.07038 -10.65244 -10.60570 -10.25512 -9.03539 -8.46485 -6.05960 1.27118 1.29846 1.39258 1.57791 1.85746 2.17652 2.45369 2.88884 3.02234 3.11120 3.81260 3.85269 3.92361 4.12791 4.17982 4.22815 4.40297 4.54342 4.62478 4.64046 4.76028 4.81690 4.86753 4.92725 5.05783 5.14174 5.24668 5.28016 5.38911 5.47710 5.58076 5.81875 5.88378 5.96195 6.03990 6.43897 6.51890 6.81773 7.32531 7.33648 7.85417 8.70373 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.024128 B = 0.005659 C = 0.005190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.217771 B = 4946.272959 C = 5393.791752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.092 4.092 3 H 0.057 0.943 4 C -0.102 4.102 5 C 0.036 3.964 6 N -0.486 5.486 7 C 0.035 3.965 8 C 0.421 3.579 9 O -0.604 6.604 10 N -0.587 5.587 11 C -0.326 4.326 12 H 0.062 0.938 13 C -0.008 4.008 14 N -0.928 5.928 15 Si 0.955 3.045 16 H -0.259 1.259 17 H -0.271 1.271 18 H -0.238 1.238 19 C 0.048 3.952 20 H 0.078 0.922 21 C 0.520 3.480 22 N -0.837 5.837 23 O -0.567 6.567 24 C -0.089 4.089 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.063 0.937 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.040 0.960 32 H 0.108 0.892 33 H 0.113 0.887 34 H 0.386 0.614 35 H 0.280 0.720 36 H 0.413 0.587 37 H 0.409 0.591 38 H 0.087 0.913 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.400 -8.627 -3.571 18.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.110 4.110 3 H 0.075 0.925 4 C -0.139 4.139 5 C -0.091 4.091 6 N -0.209 5.209 7 C -0.096 4.096 8 C 0.208 3.792 9 O -0.490 6.490 10 N -0.228 5.228 11 C -0.455 4.455 12 H 0.080 0.920 13 C -0.208 4.208 14 N -0.569 5.569 15 Si 0.776 3.224 16 H -0.184 1.184 17 H -0.196 1.196 18 H -0.161 1.161 19 C -0.063 4.063 20 H 0.096 0.904 21 C 0.305 3.695 22 N -0.401 5.401 23 O -0.446 6.446 24 C -0.127 4.127 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.096 0.904 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.059 0.941 32 H 0.126 0.874 33 H 0.131 0.869 34 H 0.221 0.779 35 H 0.089 0.911 36 H 0.243 0.757 37 H 0.241 0.759 38 H 0.106 0.894 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -15.727 -9.019 -3.358 18.438 hybrid contribution 1.780 0.821 -0.259 1.977 sum -13.947 -8.198 -3.617 16.577 Atomic orbital electron populations 1.21738 0.92835 1.02415 1.02398 1.21150 0.97070 0.98644 0.94176 0.92454 1.21610 0.92687 1.01468 0.98185 1.22383 0.97354 0.97997 0.91400 1.62289 1.08690 1.48086 1.01874 1.22384 0.88468 0.92793 1.06002 1.22099 0.82404 0.93016 0.81701 1.90419 1.63918 1.38757 1.55949 1.42282 1.06990 1.07371 1.66132 1.19026 0.91411 0.85381 1.49666 0.91976 1.26001 0.97325 1.01373 0.96084 1.69779 1.11315 1.26097 1.49684 0.85492 0.78837 0.78297 0.79789 1.18375 1.19630 1.16124 1.21888 0.98564 0.97456 0.88423 0.90437 1.20737 0.76493 0.86641 0.85630 1.43702 1.68424 1.17271 1.10743 1.90649 1.50086 1.18156 1.85733 1.21561 0.89815 1.01922 0.99435 0.91988 0.91978 0.91842 0.90396 0.90618 0.90763 0.94143 0.87442 0.86895 0.77914 0.91080 0.75684 0.75923 0.89431 0.90888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.21 71.98 0.66 -1.56 16 2 C -0.09 -2.06 2.79 -10.71 -0.03 -2.09 16 3 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 4 C -0.10 -2.45 5.38 30.65 0.16 -2.28 16 5 C 0.04 1.15 5.00 86.33 0.43 1.58 16 6 N -0.49 -16.20 4.46 -880.08 -3.92 -20.12 16 7 C 0.04 1.29 5.41 85.56 0.46 1.75 16 8 C 0.42 19.07 7.18 87.66 0.63 19.70 16 9 O -0.60 -30.79 11.22 -3.08 -0.03 -30.82 16 10 N -0.59 -28.29 5.09 -306.98 -1.56 -29.85 16 11 C -0.33 -18.87 10.16 84.04 0.85 -18.01 16 12 H 0.06 4.22 7.39 -2.91 -0.02 4.20 16 13 C -0.01 -0.46 5.50 84.93 0.47 0.01 16 14 N -0.93 -55.38 13.96 21.66 0.30 -55.08 16 15 Si 0.96 39.67 27.73 68.60 1.90 41.57 16 16 H -0.26 -10.32 7.11 99.48 0.71 -9.62 16 17 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 18 H -0.24 -8.64 6.53 99.48 0.65 -7.99 16 19 C 0.05 1.51 1.85 44.19 0.08 1.59 16 20 H 0.08 2.87 5.69 -2.38 -0.01 2.86 16 21 C 0.52 16.08 6.48 87.66 0.57 16.65 16 22 N -0.84 -18.85 8.87 -173.54 -1.54 -20.39 16 23 O -0.57 -20.88 15.40 -3.03 -0.05 -20.92 16 24 C -0.09 -2.10 4.64 30.64 0.14 -1.96 16 25 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 29 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.07 2.23 8.12 -2.39 -0.02 2.21 16 31 H 0.04 1.59 5.68 -2.39 -0.01 1.58 16 32 H 0.11 4.01 5.51 -2.39 -0.01 3.99 16 33 H 0.11 3.59 8.14 -2.39 -0.02 3.57 16 34 H 0.39 16.17 5.77 -92.71 -0.53 15.64 16 35 H 0.28 15.28 8.31 -92.71 -0.77 14.51 16 36 H 0.41 7.49 8.83 -92.71 -0.82 6.67 16 37 H 0.41 7.77 8.93 -92.71 -0.83 6.94 16 38 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 Total: -1.00 -73.59 308.56 -1.61 -75.20 By element: Atomic # 1 Polarization: 46.20 SS G_CDS: -1.14 Total: 45.05 kcal Atomic # 6 Polarization: 10.93 SS G_CDS: 4.43 Total: 15.36 kcal Atomic # 7 Polarization: -118.72 SS G_CDS: -6.72 Total: -125.44 kcal Atomic # 8 Polarization: -51.67 SS G_CDS: -0.08 Total: -51.75 kcal Atomic # 14 Polarization: 39.67 SS G_CDS: 1.90 Total: 41.57 kcal Total: -73.59 -1.61 -75.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000249565784.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.083 kcal (2) G-P(sol) polarization free energy of solvation -73.591 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds