Wall clock time and date at job start Mon Mar 30 2020 01:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 110.78473 * 2 1 4 4 C 1.55155 * 110.71937 * 123.24276 * 2 1 3 5 5 C 1.54685 * 101.67820 * 153.69369 * 4 2 1 6 6 N 1.47428 * 104.94592 * 323.27666 * 5 4 2 7 7 C 1.34765 * 125.65181 * 204.07255 * 6 5 4 8 8 O 1.21591 * 120.00338 * 179.68965 * 7 6 5 9 9 N 1.34776 * 120.00001 * 359.69183 * 7 6 5 10 10 C 1.46506 * 120.00027 * 179.97438 * 9 7 6 11 11 C 1.50699 * 109.46888 * 180.02562 * 10 9 7 12 12 O 1.21293 * 120.00471 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99768 * 179.97438 * 11 10 9 14 14 C 1.37106 * 119.99958 * 179.97438 * 13 11 10 15 15 H 1.07992 * 120.00328 * 0.02562 * 14 13 11 16 16 C 1.38947 * 119.99689 * 179.97438 * 14 13 11 17 17 N 1.31414 * 120.00367 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 119.99822 * 180.27886 * 16 14 13 19 19 H 1.48497 * 109.47322 * 179.73003 * 18 16 14 20 20 H 1.48506 * 109.47056 * 299.72747 * 18 16 14 21 21 H 1.48501 * 109.47099 * 59.72776 * 18 16 14 22 22 C 1.47029 * 108.69518 * 23.80612 * 6 5 4 23 23 H 1.09003 * 109.87555 * 118.59146 * 22 6 5 24 24 C 1.53002 * 109.88126 * 239.59287 * 22 6 5 25 25 H 1.08994 * 109.47456 * 183.23905 * 1 2 3 26 26 H 1.08999 * 109.46875 * 303.23968 * 1 2 3 27 27 H 1.09005 * 109.47068 * 63.23804 * 1 2 3 28 28 H 1.08998 * 111.00192 * 271.93933 * 4 2 1 29 29 H 1.09007 * 111.00155 * 35.74819 * 4 2 1 30 30 H 1.09003 * 110.39540 * 204.36357 * 5 4 2 31 31 H 1.09004 * 110.23852 * 82.11047 * 5 4 2 32 32 H 0.96996 * 120.00282 * 0.02562 * 9 7 6 33 33 H 1.08998 * 109.47293 * 59.99931 * 10 9 7 34 34 H 1.08997 * 109.47284 * 299.99856 * 10 9 7 35 35 H 0.97000 * 120.00327 * 0.02562 * 13 11 10 36 36 H 0.97005 * 120.00032 * 179.97438 * 17 16 14 37 37 H 1.09009 * 109.46688 * 58.55339 * 24 22 6 38 38 H 1.08993 * 109.46946 * 178.55316 * 24 22 6 39 39 H 1.08992 * 109.47203 * 298.55342 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9168 1.0190 0.0000 4 6 2.0790 -0.7955 1.2137 5 6 3.4599 -1.2542 0.6888 6 7 3.2444 -1.5509 -0.7391 7 6 3.9913 -2.3848 -1.4895 8 8 3.7169 -2.5588 -2.6612 9 7 5.0424 -3.0259 -0.9412 10 6 5.8539 -3.9328 -1.7567 11 6 6.9568 -4.5169 -0.9120 12 8 7.0556 -4.2058 0.2562 13 7 7.8335 -5.3849 -1.4547 14 6 8.8372 -5.9159 -0.6863 15 1 8.9252 -5.6390 0.3538 16 6 9.7407 -6.8112 -1.2457 17 7 9.6334 -7.1486 -2.5112 18 14 11.1036 -7.5407 -0.1969 19 1 11.9222 -8.4650 -1.0218 20 1 11.9645 -6.4491 0.3253 21 1 10.5075 -8.2877 0.9397 22 6 2.0759 -0.7912 -1.2073 23 1 2.3741 -0.1025 -1.9978 24 6 1.0063 -1.7520 -1.7307 25 1 -0.3634 -1.0259 0.0581 26 1 -0.3633 0.5633 0.8595 27 1 -0.3633 0.4628 -0.9176 28 1 2.1850 -0.1519 2.0870 29 1 1.4447 -1.6533 1.4378 30 1 3.7888 -2.1493 1.2168 31 1 4.1916 -0.4545 0.8039 32 1 5.2611 -2.8875 -0.0064 33 1 6.2878 -3.3815 -2.5909 34 1 5.2259 -4.7369 -2.1402 35 1 7.7548 -5.6334 -2.3890 36 1 10.2644 -7.7734 -2.9018 37 1 0.7188 -2.4424 -0.9377 38 1 0.1335 -1.1838 -2.0520 39 1 1.4048 -2.3142 -2.5751 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334406365.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:59 Heat of formation + Delta-G solvation = -92.681536 kcal Electronic energy + Delta-G solvation = -20667.508027 eV Core-core repulsion = 17415.933553 eV Total energy + Delta-G solvation = -3251.574475 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.60147 -40.28252 -39.00042 -36.26186 -35.39449 -34.01982 -33.35802 -32.08118 -29.62125 -28.12944 -26.45768 -25.70363 -23.84932 -21.48651 -21.22717 -20.27920 -19.94493 -19.24616 -17.52074 -17.40545 -17.01976 -16.61043 -16.41728 -15.98091 -15.74087 -15.25220 -14.85983 -14.71721 -14.30598 -13.98156 -13.73673 -13.64633 -13.54316 -13.36319 -13.02392 -12.90088 -12.78136 -12.47777 -12.28872 -12.13746 -11.81884 -11.57101 -11.49342 -11.36806 -11.24876 -10.57633 -10.32042 -10.10738 -9.54634 -8.51501 -6.02174 1.37690 1.41343 1.48391 1.55520 1.88079 2.07539 2.27680 2.87605 3.15456 3.16458 3.55605 3.64002 3.93393 4.18806 4.20443 4.33886 4.39884 4.41607 4.42974 4.56717 4.67047 4.70929 4.83625 4.93616 4.95534 5.13291 5.13821 5.24278 5.29348 5.36585 5.38417 5.42431 5.58516 5.90992 6.02015 6.46794 6.90733 7.02153 7.40249 7.49895 7.92716 8.65265 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.047740 B = 0.003363 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.365521 B = 8325.122125 C = 8776.095561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.090 4.090 3 H 0.097 0.903 4 C -0.117 4.117 5 C 0.087 3.913 6 N -0.633 5.633 7 C 0.718 3.282 8 O -0.628 6.628 9 N -0.725 5.725 10 C 0.142 3.858 11 C 0.434 3.566 12 O -0.624 6.624 13 N -0.558 5.558 14 C -0.339 4.339 15 H 0.087 0.913 16 C -0.010 4.010 17 N -0.917 5.917 18 Si 0.998 3.002 19 H -0.271 1.271 20 H -0.269 1.269 21 H -0.269 1.269 22 C 0.146 3.854 23 H 0.061 0.939 24 C -0.157 4.157 25 H 0.058 0.942 26 H 0.074 0.926 27 H 0.064 0.936 28 H 0.110 0.890 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.077 0.923 32 H 0.408 0.592 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.399 0.601 36 H 0.280 0.720 37 H 0.055 0.945 38 H 0.089 0.911 39 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.392 13.206 5.386 21.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.109 4.109 3 H 0.116 0.884 4 C -0.155 4.155 5 C -0.035 4.035 6 N -0.371 5.371 7 C 0.419 3.581 8 O -0.509 6.509 9 N -0.383 5.383 10 C 0.013 3.987 11 C 0.221 3.779 12 O -0.512 6.512 13 N -0.193 5.193 14 C -0.468 4.468 15 H 0.105 0.895 16 C -0.211 4.211 17 N -0.556 5.556 18 Si 0.821 3.179 19 H -0.196 1.196 20 H -0.194 1.194 21 H -0.194 1.194 22 C 0.043 3.957 23 H 0.079 0.921 24 C -0.214 4.214 25 H 0.078 0.922 26 H 0.093 0.907 27 H 0.083 0.917 28 H 0.128 0.872 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.095 0.905 32 H 0.246 0.754 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.233 0.767 36 H 0.090 0.910 37 H 0.074 0.926 38 H 0.108 0.892 39 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -16.338 13.079 5.124 21.546 hybrid contribution 1.076 -0.760 -0.025 1.318 sum -15.261 12.318 5.099 20.265 Atomic orbital electron populations 1.21836 0.92332 1.02599 1.02897 1.22261 0.97471 0.99001 0.92188 0.88427 1.22818 0.93640 1.00730 0.98280 1.22517 1.00021 1.01095 0.79880 1.47723 1.31286 1.46241 1.11849 1.15497 0.79563 0.78936 0.84074 1.90855 1.73768 1.69878 1.16432 1.44748 1.30453 1.47779 1.15302 1.20582 0.91394 0.93853 0.92837 1.20353 0.85556 0.83538 0.88460 1.90458 1.76724 1.65296 1.18709 1.41826 1.25709 1.38570 1.13225 1.19720 1.06880 1.24351 0.95843 0.89491 1.26154 1.00813 0.96752 0.97398 1.69681 1.38662 1.34378 1.12922 0.84914 0.77161 0.78107 0.77716 1.19601 1.19415 1.19422 1.21648 0.84202 0.92325 0.97490 0.92111 1.22170 0.98831 0.99701 1.00746 0.92249 0.90749 0.91708 0.87183 0.90467 0.91249 0.90504 0.75411 0.89157 0.89206 0.76702 0.91020 0.92563 0.89214 0.94542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 7.99 71.98 0.58 -0.77 16 2 C -0.09 -1.19 3.48 -9.61 -0.03 -1.22 16 3 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 4 C -0.12 -1.53 6.52 31.91 0.21 -1.32 16 5 C 0.09 1.74 6.56 86.78 0.57 2.31 16 6 N -0.63 -17.07 3.08 -806.30 -2.49 -19.55 16 7 C 0.72 25.45 8.27 179.06 1.48 26.93 16 8 O -0.63 -26.13 15.22 -4.00 -0.06 -26.19 16 9 N -0.72 -26.29 5.49 -482.30 -2.65 -28.94 16 10 C 0.14 5.55 6.15 85.63 0.53 6.07 16 11 C 0.43 20.64 7.85 87.66 0.69 21.33 16 12 O -0.62 -32.86 15.24 -3.07 -0.05 -32.90 16 13 N -0.56 -28.58 5.29 -306.99 -1.62 -30.21 16 14 C -0.34 -18.86 9.68 84.04 0.81 -18.04 16 15 H 0.09 5.06 7.16 -2.91 -0.02 5.04 16 16 C -0.01 -0.55 5.50 84.93 0.47 -0.08 16 17 N -0.92 -49.20 13.05 21.66 0.28 -48.91 16 18 Si 1.00 41.93 29.55 68.60 2.03 43.96 16 19 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 20 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 21 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 22 C 0.15 3.17 3.43 45.34 0.16 3.33 16 23 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 24 C -0.16 -3.43 7.93 71.98 0.57 -2.86 16 25 H 0.06 0.64 6.62 -2.39 -0.02 0.63 16 26 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.06 0.58 7.59 -2.38 -0.02 0.56 16 28 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.08 1.04 8.02 -2.38 -0.02 1.02 16 30 H 0.07 1.49 7.31 -2.39 -0.02 1.47 16 31 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.41 14.50 5.92 -92.71 -0.55 13.95 16 33 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 34 H 0.09 3.38 8.14 -2.39 -0.02 3.36 16 35 H 0.40 19.68 7.90 -92.71 -0.73 18.95 16 36 H 0.28 14.08 8.31 -92.70 -0.77 13.31 16 37 H 0.06 1.20 7.54 -2.38 -0.02 1.18 16 38 H 0.09 1.45 6.71 -2.39 -0.02 1.44 16 39 H 0.04 1.06 6.73 -2.39 -0.02 1.05 16 Total: -1.00 -68.65 318.41 1.26 -67.39 By element: Atomic # 1 Polarization: 39.90 SS G_CDS: -0.21 Total: 39.69 kcal Atomic # 6 Polarization: 29.65 SS G_CDS: 6.02 Total: 35.67 kcal Atomic # 7 Polarization: -121.14 SS G_CDS: -6.47 Total: -127.61 kcal Atomic # 8 Polarization: -58.99 SS G_CDS: -0.11 Total: -59.09 kcal Atomic # 14 Polarization: 41.93 SS G_CDS: 2.03 Total: 43.96 kcal Total: -68.65 1.26 -67.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334406365.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.296 kcal (2) G-P(sol) polarization free energy of solvation -68.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds