Wall clock time and date at job start Mon Mar 30 2020 01:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.70136 * 2 1 4 4 C 1.52763 * 109.50672 * 239.88389 * 2 1 3 5 5 C 1.53044 * 109.38140 * 185.70746 * 4 2 1 6 6 C 1.53038 * 109.54157 * 61.23897 * 5 4 2 7 7 C 1.53193 * 109.31010 * 298.63830 * 6 5 4 8 8 N 1.46918 * 108.77933 * 54.63272 * 7 6 5 9 9 C 1.34773 * 120.63316 * 126.37168 * 8 7 6 10 10 O 1.21585 * 120.00093 * 185.32680 * 9 8 7 11 11 N 1.34779 * 119.99935 * 5.04552 * 9 8 7 12 12 C 1.46501 * 119.99892 * 175.30325 * 11 9 8 13 13 C 1.50700 * 109.46989 * 180.02562 * 12 11 9 14 14 O 1.21300 * 120.00149 * 359.97438 * 13 12 11 15 15 N 1.34773 * 120.00277 * 180.02562 * 13 12 11 16 16 C 1.37102 * 120.00386 * 179.97438 * 15 13 12 17 17 H 1.08003 * 119.99534 * 359.97438 * 16 15 13 18 18 C 1.38946 * 120.00040 * 179.97438 * 16 15 13 19 19 N 1.31411 * 120.00410 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99874 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46914 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47001 * 120.00184 * 20 18 16 23 23 H 1.48497 * 109.47137 * 240.00339 * 20 18 16 24 24 H 1.09005 * 109.47075 * 304.46511 * 1 2 3 25 25 H 1.08994 * 109.47345 * 64.46352 * 1 2 3 26 26 H 1.09001 * 109.47303 * 184.46473 * 1 2 3 27 27 H 1.08997 * 109.56656 * 65.67331 * 4 2 1 28 28 H 1.08997 * 109.38681 * 305.62672 * 4 2 1 29 29 H 1.09006 * 109.45667 * 301.21496 * 5 4 2 30 30 H 1.09004 * 109.45849 * 181.26015 * 5 4 2 31 31 H 1.08993 * 109.50002 * 178.68508 * 6 5 4 32 32 H 1.08998 * 109.49724 * 58.58020 * 6 5 4 33 33 H 1.09005 * 109.58430 * 294.84365 * 7 6 5 34 34 H 1.09005 * 109.58879 * 174.42640 * 7 6 5 35 35 H 0.96994 * 119.99704 * 355.30839 * 11 9 8 36 36 H 1.08997 * 109.47201 * 299.99929 * 12 11 9 37 37 H 1.08996 * 109.47400 * 60.00551 * 12 11 9 38 38 H 0.97002 * 120.00091 * 359.97438 * 15 13 12 39 39 H 0.96992 * 120.00223 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0401 -0.7225 -1.2456 5 6 3.5638 -0.8462 -1.1727 6 6 3.9523 -1.6687 0.0580 7 6 3.4644 -0.9520 1.3210 8 7 2.0226 -0.6996 1.1944 9 6 1.1674 -1.1069 2.1531 10 8 -0.0310 -0.9792 1.9930 11 7 1.6405 -1.6610 3.2870 12 6 0.7194 -2.0093 4.3717 13 6 1.4953 -2.6076 5.5168 14 8 2.6991 -2.7314 5.4347 15 7 0.8514 -3.0062 6.6317 16 6 1.5572 -3.5509 7.6733 17 1 2.6291 -3.6611 7.6001 18 6 0.8934 -3.9613 8.8229 19 7 -0.4109 -3.8277 8.9117 20 14 1.8550 -4.7042 10.2417 21 1 3.2982 -4.7445 9.8942 22 1 1.6622 -3.8749 11.4583 23 1 1.3690 -6.0834 10.5006 24 1 -0.3633 0.5816 0.8473 25 1 -0.3634 0.4430 -0.9272 26 1 -0.3634 -1.0245 0.0800 27 1 1.7632 -0.1565 -2.1350 28 1 1.5964 -1.7169 -1.2942 29 1 4.0057 0.1476 -1.0997 30 1 3.9313 -1.3417 -2.0714 31 1 5.0363 -1.7761 0.0964 32 1 3.4904 -2.6541 -0.0023 33 1 3.9929 -0.0050 1.4309 34 1 3.6504 -1.5798 2.1924 35 1 2.5907 -1.8291 3.3849 36 1 0.2035 -1.1117 4.7126 37 1 -0.0109 -2.7330 4.0100 38 1 -0.1113 -2.9076 6.6973 39 1 -0.8742 -4.1146 9.7141 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335982430.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:30 Heat of formation + Delta-G solvation = -58.126837 kcal Electronic energy + Delta-G solvation = -20920.078868 eV Core-core repulsion = 17670.002797 eV Total energy + Delta-G solvation = -3250.076070 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.56547 -38.43926 -37.33457 -34.73266 -33.90790 -32.79128 -32.22872 -31.33772 -27.94451 -26.99035 -24.77240 -24.26796 -22.19249 -21.09196 -19.65460 -19.38648 -18.14317 -17.59664 -16.17418 -15.74454 -15.57069 -14.79009 -14.66847 -14.57855 -14.41799 -14.20912 -13.88383 -13.69152 -13.28808 -13.12736 -12.45978 -12.26675 -12.08508 -11.94578 -11.73187 -11.62164 -11.17829 -11.11921 -11.09467 -10.82227 -10.72525 -10.40277 -10.31309 -9.63677 -9.06606 -8.77345 -8.60762 -8.36980 -8.08722 -6.50434 -3.92400 2.75600 3.10878 3.22974 3.29678 3.41322 3.76680 4.01856 4.17568 4.61297 4.66319 4.68370 4.89586 4.92017 5.14062 5.18468 5.24213 5.32868 5.50371 5.56926 5.66624 5.71351 5.81777 5.86628 5.88640 5.94467 6.03813 6.09756 6.10711 6.30840 6.43677 6.75113 6.88459 7.12264 7.47154 7.94010 8.22529 8.46594 8.85981 9.05919 9.41028 9.88901 10.66596 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.039710 B = 0.003651 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.951658 B = 7667.736760 C = 8259.098213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.162 3.838 3 H 0.066 0.934 4 C -0.133 4.133 5 C -0.119 4.119 6 C -0.135 4.135 7 C 0.109 3.891 8 N -0.628 5.628 9 C 0.707 3.293 10 O -0.589 6.589 11 N -0.727 5.727 12 C 0.128 3.872 13 C 0.429 3.571 14 O -0.599 6.599 15 N -0.550 5.550 16 C -0.304 4.304 17 H 0.106 0.894 18 C 0.025 3.975 19 N -0.895 5.895 20 Si 0.932 3.068 21 H -0.267 1.267 22 H -0.280 1.280 23 H -0.280 1.280 24 H 0.072 0.928 25 H 0.037 0.963 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.067 0.933 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.404 0.596 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.396 0.604 39 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.786 6.375 -17.181 18.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.058 3.942 3 H 0.084 0.916 4 C -0.171 4.171 5 C -0.156 4.156 6 C -0.174 4.174 7 C -0.015 4.015 8 N -0.367 5.367 9 C 0.409 3.591 10 O -0.468 6.468 11 N -0.387 5.387 12 C 0.000 4.000 13 C 0.215 3.785 14 O -0.486 6.486 15 N -0.184 5.184 16 C -0.434 4.434 17 H 0.123 0.877 18 C -0.177 4.177 19 N -0.535 5.535 20 Si 0.759 3.241 21 H -0.191 1.191 22 H -0.206 1.206 23 H -0.206 1.206 24 H 0.091 0.909 25 H 0.055 0.945 26 H 0.093 0.907 27 H 0.091 0.909 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.102 0.898 35 H 0.244 0.756 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.230 0.770 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.568 6.334 -17.130 18.827 hybrid contribution 0.348 -0.449 0.894 1.060 sum 4.916 5.885 -16.236 17.956 Atomic orbital electron populations 1.22192 0.92397 1.04371 1.00178 1.20983 0.95947 0.94254 0.83015 0.91644 1.21966 0.95869 1.01665 0.97616 1.21511 0.95894 1.00329 0.97898 1.21919 1.01170 0.99634 0.94656 1.21658 0.80860 1.00381 0.98582 1.47262 1.06366 1.61968 1.21080 1.15847 0.84961 0.78392 0.79931 1.90945 1.13632 1.62685 1.79563 1.45108 1.12209 1.66082 1.15319 1.20765 0.91841 1.00709 0.86725 1.19789 0.88362 0.85589 0.84778 1.90485 1.14504 1.61722 1.81858 1.41795 1.10336 1.52972 1.13338 1.19777 0.94069 1.36598 0.92924 0.87652 1.25322 0.95784 0.97525 0.99115 1.69621 1.07327 1.46960 1.29587 0.85762 0.79712 0.78449 0.80186 1.19147 1.20628 1.20621 0.90897 0.94473 0.90687 0.90922 0.91435 0.91839 0.91808 0.90677 0.91370 0.91395 0.89791 0.75574 0.90155 0.90029 0.77020 0.91655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.73 7.59 37.16 0.28 -1.45 16 2 C 0.16 1.85 3.48 -67.82 -0.24 1.61 16 3 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 4 C -0.13 -1.22 5.35 -26.83 -0.14 -1.36 16 5 C -0.12 -0.95 5.89 -26.69 -0.16 -1.10 16 6 C -0.14 -1.22 6.08 -26.61 -0.16 -1.38 16 7 C 0.11 1.18 6.39 -3.71 -0.02 1.16 16 8 N -0.63 -8.37 2.98 -171.16 -0.51 -8.88 16 9 C 0.71 11.90 8.21 -86.92 -0.71 11.19 16 10 O -0.59 -11.18 11.75 5.29 0.06 -11.11 16 11 N -0.73 -12.75 5.44 -66.42 -0.36 -13.11 16 12 C 0.13 2.43 6.16 -5.19 -0.03 2.40 16 13 C 0.43 9.96 7.85 -10.99 -0.09 9.87 16 14 O -0.60 -15.42 15.24 5.54 0.08 -15.34 16 15 N -0.55 -13.72 5.29 -10.96 -0.06 -13.78 16 16 C -0.30 -8.30 9.68 -14.93 -0.14 -8.44 16 17 H 0.11 3.00 7.16 -52.48 -0.38 2.62 16 18 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 19 N -0.89 -23.98 13.05 55.50 0.72 -23.26 16 20 Si 0.93 20.57 29.55 -169.99 -5.02 15.54 16 21 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 22 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 23 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 24 H 0.07 1.09 6.80 -51.93 -0.35 0.74 16 25 H 0.04 0.39 8.14 -51.93 -0.42 -0.04 16 26 H 0.07 1.13 6.69 -51.93 -0.35 0.79 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 0.99 5.64 -51.93 -0.29 0.70 16 35 H 0.40 6.98 4.92 -40.82 -0.20 6.78 16 36 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 37 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 38 H 0.40 9.53 7.90 -40.82 -0.32 9.20 16 39 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 313.76 15.07 4.73 4.73 Total: -1.00 -30.64 313.76 -7.54 -38.18 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: -5.68 Total: 13.97 kcal Atomic # 6 Polarization: 14.58 SS G_CDS: -1.51 Total: 13.06 kcal Atomic # 7 Polarization: -58.83 SS G_CDS: -0.20 Total: -59.04 kcal Atomic # 8 Polarization: -26.60 SS G_CDS: 0.15 Total: -26.45 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -30.64 -7.54 -38.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335982430.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.946 kcal (2) G-P(sol) polarization free energy of solvation -30.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds