Wall clock time and date at job start Mon Mar 30 2020 01:35:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.70136 * 2 1 4 4 C 1.52763 * 109.50672 * 239.88389 * 2 1 3 5 5 C 1.53044 * 109.38140 * 185.70746 * 4 2 1 6 6 C 1.53038 * 109.54157 * 61.23897 * 5 4 2 7 7 C 1.53193 * 109.31010 * 298.63830 * 6 5 4 8 8 N 1.46918 * 108.77933 * 54.63272 * 7 6 5 9 9 C 1.34773 * 120.63316 * 126.37168 * 8 7 6 10 10 O 1.21585 * 120.00093 * 185.32680 * 9 8 7 11 11 N 1.34779 * 119.99935 * 5.04552 * 9 8 7 12 12 C 1.46501 * 119.99892 * 175.30325 * 11 9 8 13 13 C 1.50700 * 109.46989 * 180.02562 * 12 11 9 14 14 O 1.21300 * 120.00149 * 359.97438 * 13 12 11 15 15 N 1.34773 * 120.00277 * 180.02562 * 13 12 11 16 16 C 1.37102 * 120.00386 * 179.97438 * 15 13 12 17 17 H 1.08003 * 119.99534 * 359.97438 * 16 15 13 18 18 C 1.38946 * 120.00040 * 179.97438 * 16 15 13 19 19 N 1.31411 * 120.00410 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99874 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46914 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.47001 * 120.00184 * 20 18 16 23 23 H 1.48497 * 109.47137 * 240.00339 * 20 18 16 24 24 H 1.09005 * 109.47075 * 304.46511 * 1 2 3 25 25 H 1.08994 * 109.47345 * 64.46352 * 1 2 3 26 26 H 1.09001 * 109.47303 * 184.46473 * 1 2 3 27 27 H 1.08997 * 109.56656 * 65.67331 * 4 2 1 28 28 H 1.08997 * 109.38681 * 305.62672 * 4 2 1 29 29 H 1.09006 * 109.45667 * 301.21496 * 5 4 2 30 30 H 1.09004 * 109.45849 * 181.26015 * 5 4 2 31 31 H 1.08993 * 109.50002 * 178.68508 * 6 5 4 32 32 H 1.08998 * 109.49724 * 58.58020 * 6 5 4 33 33 H 1.09005 * 109.58430 * 294.84365 * 7 6 5 34 34 H 1.09005 * 109.58879 * 174.42640 * 7 6 5 35 35 H 0.96994 * 119.99704 * 355.30839 * 11 9 8 36 36 H 1.08997 * 109.47201 * 299.99929 * 12 11 9 37 37 H 1.08996 * 109.47400 * 60.00551 * 12 11 9 38 38 H 0.97002 * 120.00091 * 359.97438 * 15 13 12 39 39 H 0.96992 * 120.00223 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0401 -0.7225 -1.2456 5 6 3.5638 -0.8462 -1.1727 6 6 3.9523 -1.6687 0.0580 7 6 3.4644 -0.9520 1.3210 8 7 2.0226 -0.6996 1.1944 9 6 1.1674 -1.1069 2.1531 10 8 -0.0310 -0.9792 1.9930 11 7 1.6405 -1.6610 3.2870 12 6 0.7194 -2.0093 4.3717 13 6 1.4953 -2.6076 5.5168 14 8 2.6991 -2.7314 5.4347 15 7 0.8514 -3.0062 6.6317 16 6 1.5572 -3.5509 7.6733 17 1 2.6291 -3.6611 7.6001 18 6 0.8934 -3.9613 8.8229 19 7 -0.4109 -3.8277 8.9117 20 14 1.8550 -4.7042 10.2417 21 1 3.2982 -4.7445 9.8942 22 1 1.6622 -3.8749 11.4583 23 1 1.3690 -6.0834 10.5006 24 1 -0.3633 0.5816 0.8473 25 1 -0.3634 0.4430 -0.9272 26 1 -0.3634 -1.0245 0.0800 27 1 1.7632 -0.1565 -2.1350 28 1 1.5964 -1.7169 -1.2942 29 1 4.0057 0.1476 -1.0997 30 1 3.9313 -1.3417 -2.0714 31 1 5.0363 -1.7761 0.0964 32 1 3.4904 -2.6541 -0.0023 33 1 3.9929 -0.0050 1.4309 34 1 3.6504 -1.5798 2.1924 35 1 2.5907 -1.8291 3.3849 36 1 0.2035 -1.1117 4.7126 37 1 -0.0109 -2.7330 4.0100 38 1 -0.1113 -2.9076 6.6973 39 1 -0.8742 -4.1146 9.7141 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335982430.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:29 Heat of formation + Delta-G solvation = -79.148716 kcal Electronic energy + Delta-G solvation = -20920.990445 eV Core-core repulsion = 17670.002797 eV Total energy + Delta-G solvation = -3250.987647 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.75813 -40.22621 -38.48221 -36.34701 -35.63671 -33.75964 -33.43145 -33.18334 -29.31014 -28.20266 -26.43621 -25.39059 -23.18273 -22.04907 -21.32942 -20.68659 -20.04655 -18.89196 -17.47945 -17.31423 -17.02070 -16.47956 -16.10939 -15.87708 -15.55634 -15.38412 -15.18641 -14.87504 -14.56853 -14.22327 -13.93527 -13.55131 -13.52373 -13.35849 -13.16453 -12.91552 -12.67284 -12.44773 -12.10914 -12.02165 -11.88432 -11.58355 -11.57828 -11.48334 -10.56257 -10.32486 -10.18443 -10.08394 -9.44532 -8.51298 -6.01659 1.35074 1.42513 1.54185 1.60224 1.88976 2.12142 2.28019 2.83925 3.15533 3.15909 3.82425 3.88097 3.94790 4.09597 4.21007 4.32671 4.37778 4.42132 4.45962 4.53136 4.67835 4.79428 4.87112 4.96661 5.04345 5.11918 5.20103 5.26792 5.30142 5.38174 5.47467 5.49964 5.76595 5.92280 5.93142 6.47571 6.93672 7.03147 7.42141 7.56166 7.93830 8.65926 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.039710 B = 0.003651 C = 0.003389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.951658 B = 7667.736760 C = 8259.098213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.155 3.845 3 H 0.084 0.916 4 C -0.127 4.127 5 C -0.114 4.114 6 C -0.132 4.132 7 C 0.103 3.897 8 N -0.624 5.624 9 C 0.701 3.299 10 O -0.615 6.615 11 N -0.730 5.730 12 C 0.142 3.858 13 C 0.433 3.567 14 O -0.625 6.625 15 N -0.559 5.559 16 C -0.337 4.337 17 H 0.086 0.914 18 C -0.011 4.011 19 N -0.916 5.916 20 Si 0.998 3.002 21 H -0.269 1.269 22 H -0.271 1.271 23 H -0.271 1.271 24 H 0.046 0.954 25 H 0.063 0.937 26 H 0.046 0.954 27 H 0.095 0.905 28 H 0.051 0.949 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.052 0.948 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.406 0.594 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.399 0.601 39 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.835 6.930 -18.259 20.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.052 3.948 3 H 0.102 0.898 4 C -0.165 4.165 5 C -0.152 4.152 6 C -0.170 4.170 7 C -0.020 4.020 8 N -0.362 5.362 9 C 0.403 3.597 10 O -0.497 6.497 11 N -0.391 5.391 12 C 0.014 3.986 13 C 0.220 3.780 14 O -0.513 6.513 15 N -0.194 5.194 16 C -0.466 4.466 17 H 0.104 0.896 18 C -0.211 4.211 19 N -0.556 5.556 20 Si 0.821 3.179 21 H -0.194 1.194 22 H -0.196 1.196 23 H -0.196 1.196 24 H 0.065 0.935 25 H 0.082 0.918 26 H 0.066 0.934 27 H 0.114 0.886 28 H 0.070 0.930 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.113 0.887 32 H 0.071 0.929 33 H 0.105 0.895 34 H 0.088 0.912 35 H 0.246 0.754 36 H 0.108 0.892 37 H 0.107 0.893 38 H 0.233 0.767 39 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.626 6.905 -18.248 20.306 hybrid contribution 0.017 -0.581 1.152 1.290 sum 5.643 6.324 -17.096 19.082 Atomic orbital electron populations 1.22023 0.93714 1.02273 1.00371 1.21242 0.94963 0.95399 0.83188 0.89771 1.21932 0.96761 1.00767 0.97076 1.21513 0.94802 1.01059 0.97813 1.21912 1.02197 0.98738 0.94166 1.21869 0.79467 1.01391 0.99241 1.47410 1.07068 1.61051 1.20630 1.16035 0.85080 0.78394 0.80224 1.90944 1.14894 1.63724 1.80106 1.45081 1.11962 1.66653 1.15375 1.20550 0.91490 1.00922 0.85662 1.20417 0.88211 0.84263 0.85062 1.90459 1.15901 1.62447 1.82476 1.41837 1.10408 1.53530 1.13629 1.19783 0.93613 1.38704 0.94513 0.89557 1.26141 0.96734 0.97270 1.00993 1.69686 1.08369 1.47099 1.30492 0.84800 0.78100 0.77973 0.77028 1.19383 1.19608 1.19630 0.93506 0.91800 0.93448 0.88614 0.93042 0.90379 0.90229 0.88681 0.92924 0.89487 0.91190 0.75423 0.89158 0.89325 0.76715 0.91060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.19 7.59 71.98 0.55 -2.64 16 2 C 0.15 3.26 3.48 44.83 0.16 3.42 16 3 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 4 C -0.13 -2.00 5.35 30.53 0.16 -1.84 16 5 C -0.11 -1.45 5.89 30.62 0.18 -1.27 16 6 C -0.13 -2.08 6.08 30.67 0.19 -1.90 16 7 C 0.10 2.09 6.39 86.36 0.55 2.64 16 8 N -0.62 -16.08 2.98 -813.70 -2.42 -18.50 16 9 C 0.70 23.68 8.21 179.05 1.47 25.15 16 10 O -0.62 -23.74 11.75 -3.98 -0.05 -23.79 16 11 N -0.73 -25.80 5.44 -482.31 -2.62 -28.42 16 12 C 0.14 5.46 6.16 85.63 0.53 5.99 16 13 C 0.43 20.47 7.85 87.66 0.69 21.15 16 14 O -0.62 -32.77 15.24 -3.09 -0.05 -32.81 16 15 N -0.56 -28.47 5.29 -306.98 -1.62 -30.09 16 16 C -0.34 -18.71 9.68 84.04 0.81 -17.89 16 17 H 0.09 5.04 7.16 -2.91 -0.02 5.02 16 18 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 19 N -0.92 -49.00 13.05 21.66 0.28 -48.72 16 20 Si 1.00 41.89 29.55 68.60 2.03 43.92 16 21 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 22 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 23 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 24 H 0.05 1.41 6.80 -2.38 -0.02 1.39 16 25 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.05 1.45 6.69 -2.39 -0.02 1.43 16 27 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 30 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.09 1.46 8.14 -2.38 -0.02 1.44 16 34 H 0.07 1.62 5.64 -2.38 -0.01 1.61 16 35 H 0.41 14.15 4.92 -92.71 -0.46 13.69 16 36 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 37 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 38 H 0.40 19.57 7.90 -92.71 -0.73 18.83 16 39 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 Total: -1.00 -66.32 313.76 1.18 -65.14 By element: Atomic # 1 Polarization: 40.69 SS G_CDS: -0.12 Total: 40.57 kcal Atomic # 6 Polarization: 26.96 SS G_CDS: 5.75 Total: 32.71 kcal Atomic # 7 Polarization: -119.35 SS G_CDS: -6.39 Total: -125.74 kcal Atomic # 8 Polarization: -56.51 SS G_CDS: -0.09 Total: -56.60 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.92 kcal Total: -66.32 1.18 -65.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335982430.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.011 kcal (2) G-P(sol) polarization free energy of solvation -66.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds