Wall clock time and date at job start Mon Mar 30 2020 01:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 110.88664 * 2 1 4 4 C 1.55159 * 111.00388 * 123.92274 * 2 1 3 5 5 C 1.54327 * 102.94253 * 153.58005 * 4 2 1 6 6 H 1.08999 * 109.87703 * 218.38817 * 5 4 2 7 7 C 1.52995 * 110.01271 * 97.29512 * 5 4 2 8 8 N 1.47016 * 107.26927 * 337.80422 * 5 4 2 9 9 C 1.34777 * 125.65017 * 178.90416 * 8 5 4 10 10 O 1.21585 * 119.99790 * 0.02562 * 9 8 5 11 11 N 1.34777 * 120.00317 * 180.02562 * 9 8 5 12 12 C 1.46499 * 120.00083 * 180.02562 * 11 9 8 13 13 C 1.50694 * 109.47448 * 180.02562 * 12 11 9 14 14 O 1.21294 * 119.99708 * 359.97438 * 13 12 11 15 15 N 1.34778 * 120.00561 * 180.02562 * 13 12 11 16 16 C 1.37091 * 119.99999 * 179.97438 * 15 13 12 17 17 H 1.07997 * 120.00456 * 359.97438 * 16 15 13 18 18 C 1.38957 * 119.99589 * 179.97438 * 16 15 13 19 19 N 1.31406 * 120.00016 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99931 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47236 * 59.99972 * 20 18 16 22 22 H 1.48496 * 109.47467 * 180.02562 * 20 18 16 23 23 H 1.48508 * 109.47289 * 300.00645 * 20 18 16 24 24 C 1.47431 * 108.70657 * 358.94618 * 8 5 4 25 25 H 1.09002 * 109.47153 * 182.42594 * 1 2 3 26 26 H 1.09001 * 109.46832 * 62.42784 * 1 2 3 27 27 H 1.09004 * 109.47261 * 302.42766 * 1 2 3 28 28 H 1.09005 * 110.72187 * 271.94184 * 4 2 1 29 29 H 1.08992 * 110.71878 * 35.21277 * 4 2 1 30 30 H 1.09002 * 109.47317 * 300.66164 * 7 5 4 31 31 H 1.09007 * 109.46913 * 60.66267 * 7 5 4 32 32 H 1.09000 * 109.47194 * 180.66030 * 7 5 4 33 33 H 0.96997 * 119.99911 * 0.02562 * 11 9 8 34 34 H 1.09004 * 109.47287 * 300.00307 * 12 11 9 35 35 H 1.09002 * 109.47417 * 60.00012 * 12 11 9 36 36 H 0.97005 * 119.99433 * 359.97438 * 15 13 12 37 37 H 0.97000 * 120.00027 * 179.97438 * 19 18 16 38 38 H 1.09004 * 110.36176 * 265.28901 * 24 8 5 39 39 H 1.08994 * 110.45977 * 143.01254 * 24 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0861 -0.8084 1.2019 5 6 3.4675 -1.2743 0.6956 6 1 3.6650 -2.2897 1.0393 7 6 4.5580 -0.3308 1.2066 8 7 3.4272 -1.2428 -0.7737 9 6 4.4481 -1.5596 -1.5945 10 8 5.5161 -1.9083 -1.1296 11 7 4.2853 -1.4899 -2.9306 12 6 5.3949 -1.8348 -3.8227 13 6 4.9560 -1.6745 -5.2554 14 8 3.8272 -1.3086 -5.5066 15 7 5.8175 -1.9387 -6.2578 16 6 5.4180 -1.7933 -7.5611 17 1 4.4129 -1.4675 -7.7848 18 6 6.3063 -2.0652 -8.5945 19 7 7.5291 -2.4621 -8.3223 20 14 5.7619 -1.8678 -10.3704 21 1 5.3535 -0.4602 -10.6094 22 1 6.8864 -2.2178 -11.2748 23 1 4.6124 -2.7690 -10.6389 24 6 2.0853 -0.8061 -1.2006 25 1 -0.3633 -1.0268 0.0435 26 1 -0.3633 0.4757 -0.9110 27 1 -0.3634 0.5511 0.8674 28 1 2.1921 -0.1707 2.0797 29 1 1.4468 -1.6636 1.4203 30 1 4.3584 0.6807 0.8529 31 1 4.5648 -0.3399 2.2966 32 1 5.5279 -0.6610 0.8345 33 1 3.4334 -1.2113 -3.3014 34 1 6.2388 -1.1737 -3.6255 35 1 5.6942 -2.8682 -3.6476 36 1 6.7201 -2.2317 -6.0569 37 1 8.1491 -2.6523 -9.0437 38 1 1.4519 -1.6699 -1.4030 39 1 2.1542 -0.1717 -2.0842 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336388092.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:32 Heat of formation + Delta-G solvation = -96.311729 kcal Electronic energy + Delta-G solvation = -20632.157518 eV Core-core repulsion = 17380.425626 eV Total energy + Delta-G solvation = -3251.731892 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.56881 -40.25606 -38.90377 -36.26780 -35.37111 -33.86428 -33.39676 -32.58649 -29.14988 -27.75698 -26.77503 -26.26729 -23.20910 -21.52090 -21.16544 -20.75535 -20.04956 -19.13529 -17.52517 -17.33099 -17.00871 -16.58551 -16.40607 -16.00783 -15.64069 -15.27791 -14.80094 -14.51889 -14.27431 -13.97997 -13.95863 -13.54560 -13.47542 -13.33440 -13.20658 -12.90528 -12.78296 -12.49134 -12.47684 -12.13683 -11.79961 -11.59331 -11.57133 -11.40775 -11.20251 -10.57729 -10.32348 -10.10787 -9.55293 -8.51520 -6.02132 1.37723 1.41409 1.48300 1.55555 1.88001 2.07046 2.27730 2.86490 3.15457 3.15918 3.52930 3.64998 3.95452 4.15112 4.19214 4.35318 4.39583 4.42513 4.43394 4.54718 4.59260 4.76401 4.85533 4.92390 4.94961 5.07650 5.15676 5.26322 5.30320 5.36148 5.38012 5.44586 5.52987 5.90919 6.01303 6.46827 6.89914 7.02145 7.40091 7.49471 7.92744 8.65247 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.034904 B = 0.003555 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.000481 B = 7873.869897 C = 8557.297011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.095 4.095 3 H 0.085 0.915 4 C -0.111 4.111 5 C 0.143 3.857 6 H 0.064 0.936 7 C -0.158 4.158 8 N -0.633 5.633 9 C 0.718 3.282 10 O -0.627 6.627 11 N -0.725 5.725 12 C 0.142 3.858 13 C 0.433 3.567 14 O -0.624 6.624 15 N -0.557 5.557 16 C -0.339 4.339 17 H 0.087 0.913 18 C -0.010 4.010 19 N -0.916 5.916 20 Si 0.998 3.002 21 H -0.269 1.269 22 H -0.271 1.271 23 H -0.269 1.269 24 C 0.092 3.908 25 H 0.062 0.938 26 H 0.058 0.942 27 H 0.075 0.925 28 H 0.105 0.895 29 H 0.090 0.910 30 H 0.054 0.946 31 H 0.088 0.912 32 H 0.038 0.962 33 H 0.407 0.593 34 H 0.090 0.910 35 H 0.091 0.909 36 H 0.399 0.601 37 H 0.280 0.720 38 H 0.075 0.925 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.135 4.097 17.880 21.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.114 4.114 3 H 0.103 0.897 4 C -0.149 4.149 5 C 0.040 3.960 6 H 0.082 0.918 7 C -0.216 4.216 8 N -0.371 5.371 9 C 0.419 3.581 10 O -0.508 6.508 11 N -0.383 5.383 12 C 0.013 3.987 13 C 0.220 3.780 14 O -0.512 6.512 15 N -0.193 5.193 16 C -0.468 4.468 17 H 0.105 0.895 18 C -0.211 4.211 19 N -0.556 5.556 20 Si 0.821 3.179 21 H -0.194 1.194 22 H -0.196 1.196 23 H -0.194 1.194 24 C -0.030 4.030 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.094 0.906 28 H 0.124 0.876 29 H 0.109 0.891 30 H 0.073 0.927 31 H 0.107 0.893 32 H 0.057 0.943 33 H 0.245 0.755 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.233 0.767 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.853 3.998 17.848 21.268 hybrid contribution 0.384 -0.119 -1.253 1.316 sum -10.470 3.879 16.595 20.001 Atomic orbital electron populations 1.21686 0.92057 1.02824 1.02895 1.22302 0.97258 0.98887 0.92944 0.89684 1.22808 0.92735 1.00959 0.98370 1.21633 0.97598 0.99464 0.77345 0.91829 1.22113 0.98385 0.99004 1.02065 1.47700 1.11771 1.70641 1.06943 1.15497 0.83313 0.78512 0.80735 1.90854 1.27057 1.56834 1.76100 1.44756 1.16944 1.72883 1.03732 1.20582 0.89604 1.02517 0.85948 1.20360 0.86182 0.83954 0.87470 1.90459 1.21589 1.54228 1.84951 1.41819 1.13929 1.58223 1.05307 1.19722 0.99670 1.45329 0.82127 0.89500 1.26153 0.94885 0.95618 1.04435 1.69677 1.05645 1.44689 1.35599 0.84912 0.77946 0.79024 0.76004 1.19415 1.19596 1.19428 1.22628 0.82456 0.98923 0.99006 0.91860 0.92273 0.90603 0.87636 0.89111 0.92659 0.89304 0.94300 0.75455 0.89180 0.89133 0.76697 0.91015 0.90675 0.91479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.29 71.98 0.67 -0.70 16 2 C -0.09 -1.31 3.64 -9.40 -0.03 -1.35 16 3 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 4 C -0.11 -1.40 5.97 31.78 0.19 -1.21 16 5 C 0.14 3.03 3.49 45.34 0.16 3.19 16 6 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 7 C -0.16 -3.39 9.07 71.98 0.65 -2.73 16 8 N -0.63 -17.07 3.08 -805.89 -2.48 -19.55 16 9 C 0.72 25.44 8.27 179.05 1.48 26.93 16 10 O -0.63 -26.00 15.22 -3.98 -0.06 -26.06 16 11 N -0.73 -26.38 5.49 -482.30 -2.65 -29.03 16 12 C 0.14 5.55 6.15 85.63 0.53 6.08 16 13 C 0.43 20.64 7.85 87.65 0.69 21.33 16 14 O -0.62 -32.96 15.24 -3.07 -0.05 -33.01 16 15 N -0.56 -28.57 5.29 -306.99 -1.62 -30.19 16 16 C -0.34 -18.89 9.68 84.04 0.81 -18.08 16 17 H 0.09 5.06 7.16 -2.91 -0.02 5.04 16 18 C -0.01 -0.53 5.50 84.93 0.47 -0.07 16 19 N -0.92 -49.15 13.05 21.66 0.28 -48.87 16 20 Si 1.00 41.92 29.55 68.60 2.03 43.95 16 21 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 22 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 23 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 24 C 0.09 1.90 6.04 86.85 0.52 2.43 16 25 H 0.06 0.60 8.11 -2.39 -0.02 0.58 16 26 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.08 0.56 8.14 -2.38 -0.02 0.54 16 28 H 0.11 0.92 7.83 -2.38 -0.02 0.90 16 29 H 0.09 0.95 8.01 -2.39 -0.02 0.93 16 30 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 32 H 0.04 1.12 6.73 -2.39 -0.02 1.10 16 33 H 0.41 14.60 5.92 -92.71 -0.55 14.05 16 34 H 0.09 3.39 8.14 -2.38 -0.02 3.37 16 35 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 36 H 0.40 19.68 7.90 -92.70 -0.73 18.95 16 37 H 0.28 14.07 8.31 -92.71 -0.77 13.30 16 38 H 0.08 1.46 8.04 -2.38 -0.02 1.44 16 39 H 0.07 1.50 7.30 -2.39 -0.02 1.48 16 Total: -1.00 -68.41 323.63 1.37 -67.04 By element: Atomic # 1 Polarization: 40.12 SS G_CDS: -0.22 Total: 39.90 kcal Atomic # 6 Polarization: 29.67 SS G_CDS: 6.14 Total: 35.81 kcal Atomic # 7 Polarization: -121.17 SS G_CDS: -6.47 Total: -127.64 kcal Atomic # 8 Polarization: -58.95 SS G_CDS: -0.11 Total: -59.06 kcal Atomic # 14 Polarization: 41.92 SS G_CDS: 2.03 Total: 43.95 kcal Total: -68.41 1.37 -67.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336388092.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.273 kcal (2) G-P(sol) polarization free energy of solvation -68.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds