Wall clock time and date at job start Mon Mar 30 2020 01:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 110.88605 * 2 1 4 4 C 1.55156 * 111.00511 * 236.11573 * 2 1 3 5 5 C 1.54324 * 102.94374 * 206.38609 * 4 2 1 6 6 H 1.09000 * 109.88303 * 141.61267 * 5 4 2 7 7 C 1.52995 * 109.88299 * 262.77872 * 5 4 2 8 8 N 1.47019 * 107.27118 * 22.19456 * 5 4 2 9 9 C 1.34776 * 125.65091 * 181.08861 * 8 5 4 10 10 O 1.21585 * 120.00037 * 0.02562 * 9 8 5 11 11 N 1.34779 * 120.00037 * 180.02562 * 9 8 5 12 12 C 1.46498 * 119.99616 * 180.02562 * 11 9 8 13 13 C 1.50701 * 109.46695 * 179.97438 * 12 11 9 14 14 O 1.21295 * 120.00577 * 359.97438 * 13 12 11 15 15 N 1.34782 * 119.99666 * 179.97438 * 13 12 11 16 16 C 1.37103 * 119.99625 * 179.97438 * 15 13 12 17 17 H 1.08001 * 120.00088 * 0.02562 * 16 15 13 18 18 C 1.38955 * 119.99787 * 179.97438 * 16 15 13 19 19 N 1.31404 * 120.00018 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 119.99907 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.46996 * 89.99951 * 20 18 16 22 22 H 1.48502 * 109.47004 * 210.00125 * 20 18 16 23 23 H 1.48496 * 109.46984 * 329.99932 * 20 18 16 24 24 C 1.47536 * 108.71308 * 1.05881 * 8 5 4 25 25 H 1.08996 * 109.46887 * 180.69968 * 1 2 3 26 26 H 1.08996 * 109.46956 * 300.70027 * 1 2 3 27 27 H 1.09003 * 109.46718 * 60.70447 * 1 2 3 28 28 H 1.09001 * 110.72614 * 324.75342 * 4 2 1 29 29 H 1.09000 * 110.71772 * 87.84842 * 4 2 1 30 30 H 1.09001 * 109.47192 * 60.00007 * 7 5 4 31 31 H 1.09007 * 109.46972 * 180.02562 * 7 5 4 32 32 H 1.09004 * 109.47227 * 299.99690 * 7 5 4 33 33 H 0.96996 * 120.00051 * 359.97438 * 11 9 8 34 34 H 1.09001 * 109.47118 * 299.99713 * 12 11 9 35 35 H 1.08995 * 109.47915 * 59.99991 * 12 11 9 36 36 H 0.96997 * 120.00610 * 359.97438 * 15 13 12 37 37 H 0.96995 * 120.00379 * 179.97438 * 19 18 16 38 38 H 1.09008 * 110.40688 * 217.04500 * 24 8 5 39 39 H 1.08997 * 110.36984 * 94.69142 * 24 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0862 -0.8075 -1.2025 5 6 3.4679 -1.2731 -0.6968 6 1 3.6659 -2.2882 -1.0410 7 6 4.5553 -0.3259 -1.2078 8 7 3.4281 -1.2422 0.7725 9 6 4.4494 -1.5591 1.5929 10 8 5.5177 -1.9064 1.1276 11 7 4.2866 -1.4910 2.9291 12 6 5.3970 -1.8349 3.8207 13 6 4.9579 -1.6768 5.2536 14 8 3.8288 -1.3122 5.5054 15 7 5.8201 -1.9405 6.2555 16 6 5.4208 -1.7962 7.5592 17 1 4.4154 -1.4715 7.7832 18 6 6.3094 -2.0686 8.5921 19 7 5.9270 -1.9297 9.8416 20 14 8.0482 -2.6308 8.2045 21 1 8.9363 -1.4466 8.0856 22 1 8.5389 -3.5101 9.2959 23 1 8.0514 -3.3825 6.9239 24 6 2.0852 -0.8062 1.2006 25 1 -0.3633 -1.0276 0.0125 26 1 -0.3633 0.5247 0.8836 27 1 -0.3633 0.5029 -0.8963 28 1 1.4472 -1.6631 -1.4212 29 1 2.1887 -0.1701 -2.0807 30 1 4.3597 0.6824 -0.8428 31 1 5.5279 -0.6610 -0.8473 32 1 4.5530 -0.3245 -2.2978 33 1 3.4345 -1.2136 3.3003 34 1 5.6981 -2.8676 3.6444 35 1 6.2396 -1.1722 3.6241 36 1 6.7229 -2.2325 6.0543 37 1 6.5471 -2.1202 10.5627 38 1 2.1553 -0.1714 2.0840 39 1 1.4522 -1.6702 1.4026 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336388093.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:35 Heat of formation + Delta-G solvation = -67.047354 kcal Electronic energy + Delta-G solvation = -20682.016228 eV Core-core repulsion = 17431.553335 eV Total energy + Delta-G solvation = -3250.462893 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.42427 -38.70768 -37.71456 -34.52324 -33.77404 -33.03906 -31.85095 -31.58171 -27.78300 -27.00365 -25.84674 -24.32559 -22.15800 -20.57235 -19.73219 -19.46726 -18.65024 -17.78245 -16.43887 -15.89668 -15.51667 -15.18561 -15.02917 -14.52980 -14.16379 -13.78851 -13.72836 -13.51753 -13.15320 -12.98689 -12.66510 -12.44695 -12.43070 -12.21565 -12.11750 -11.90568 -11.78864 -11.22521 -11.09305 -10.90182 -10.68776 -10.63201 -10.05709 -9.93938 -9.68821 -8.95964 -8.75465 -8.46496 -8.29306 -6.40006 -3.92495 2.64974 3.00810 3.05499 3.13407 3.34550 3.59057 4.01449 4.05046 4.22947 4.42703 4.56051 4.63964 4.91664 5.11406 5.15206 5.15408 5.26607 5.31742 5.43521 5.54977 5.56780 5.60066 5.68062 5.70229 5.81362 5.83210 5.87699 5.97417 6.03602 6.18152 6.38952 6.68725 7.17600 7.45994 8.01353 8.15452 8.45521 8.76991 8.82643 9.30888 9.64791 10.72219 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.034319 B = 0.003759 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.669109 B = 7447.785777 C = 8146.465674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.103 4.103 3 H 0.085 0.915 4 C -0.125 4.125 5 C 0.154 3.846 6 H 0.072 0.928 7 C -0.163 4.163 8 N -0.635 5.635 9 C 0.724 3.276 10 O -0.594 6.594 11 N -0.724 5.724 12 C 0.126 3.874 13 C 0.439 3.561 14 O -0.580 6.580 15 N -0.577 5.577 16 C -0.310 4.310 17 H 0.121 0.879 18 C 0.045 3.955 19 N -0.875 5.875 20 Si 0.879 3.121 21 H -0.269 1.269 22 H -0.275 1.275 23 H -0.267 1.267 24 C 0.101 3.899 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.407 0.593 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.375 0.625 37 H 0.275 0.725 38 H 0.076 0.924 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.163 2.439 -21.072 22.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.122 4.122 3 H 0.103 0.897 4 C -0.163 4.163 5 C 0.051 3.949 6 H 0.090 0.910 7 C -0.222 4.222 8 N -0.374 5.374 9 C 0.426 3.574 10 O -0.473 6.473 11 N -0.382 5.382 12 C -0.002 4.002 13 C 0.225 3.775 14 O -0.464 6.464 15 N -0.214 5.214 16 C -0.438 4.438 17 H 0.139 0.861 18 C -0.159 4.159 19 N -0.514 5.514 20 Si 0.705 3.295 21 H -0.194 1.194 22 H -0.200 1.200 23 H -0.192 1.192 24 C -0.023 4.023 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.095 0.905 29 H 0.101 0.899 30 H 0.073 0.927 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.245 0.755 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.208 0.792 37 H 0.086 0.914 38 H 0.094 0.906 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.993 2.378 -20.894 21.866 hybrid contribution 1.025 -0.339 0.209 1.100 sum -4.968 2.039 -20.684 21.370 Atomic orbital electron populations 1.21708 0.93685 1.02313 1.02226 1.22320 0.96133 0.99431 0.94358 0.89696 1.22811 0.95155 1.00244 0.98057 1.21323 0.95279 0.99566 0.78783 0.91006 1.22173 1.00328 0.99289 1.00365 1.47600 1.11690 1.72002 1.06094 1.15331 0.82847 0.78460 0.80796 1.90880 1.25445 1.55361 1.75652 1.44792 1.17244 1.72671 1.03517 1.20801 0.89248 1.01851 0.88346 1.19663 0.86746 0.85107 0.85979 1.90530 1.20047 1.51913 1.83902 1.42115 1.12671 1.60038 1.06599 1.19442 1.01792 1.43765 0.78840 0.86104 1.25061 0.98610 0.97291 0.94929 1.69612 1.36233 1.47097 0.98457 0.86670 0.84458 0.79566 0.78811 1.19390 1.19995 1.19188 1.22418 0.83663 0.98337 0.97857 0.92249 0.92059 0.92177 0.90519 0.89923 0.92702 0.90780 0.92094 0.75474 0.89897 0.89916 0.79219 0.91396 0.90564 0.91261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.89 9.29 37.16 0.35 -0.54 16 2 C -0.10 -0.81 3.64 -88.47 -0.32 -1.13 16 3 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 4 C -0.12 -0.94 5.96 -24.90 -0.15 -1.09 16 5 C 0.15 1.67 3.50 -66.96 -0.23 1.44 16 6 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 7 C -0.16 -1.76 9.05 37.15 0.34 -1.42 16 8 N -0.64 -8.38 3.08 -168.61 -0.52 -8.89 16 9 C 0.72 12.19 8.27 -86.92 -0.72 11.47 16 10 O -0.59 -11.59 15.25 5.29 0.08 -11.51 16 11 N -0.72 -12.45 5.49 -66.42 -0.36 -12.81 16 12 C 0.13 2.28 6.15 -5.19 -0.03 2.25 16 13 C 0.44 9.83 7.85 -10.98 -0.09 9.74 16 14 O -0.58 -14.81 15.24 5.54 0.08 -14.72 16 15 N -0.58 -13.56 5.09 -10.96 -0.06 -13.62 16 16 C -0.31 -8.60 10.16 -14.93 -0.15 -8.75 16 17 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 18 C 0.05 1.22 5.50 -17.47 -0.10 1.12 16 19 N -0.87 -25.08 13.96 55.50 0.77 -24.31 16 20 Si 0.88 19.14 27.74 -169.99 -4.71 14.42 16 21 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 22 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 23 H -0.27 -5.33 6.52 56.52 0.37 -4.96 16 24 C 0.10 1.05 6.05 -2.47 -0.01 1.04 16 25 H 0.06 0.36 8.13 -51.93 -0.42 -0.06 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.08 0.51 8.04 -51.93 -0.42 0.10 16 29 H 0.08 0.51 7.84 -51.93 -0.41 0.10 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.07 1.02 6.76 -51.93 -0.35 0.67 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.41 6.92 5.92 -40.82 -0.24 6.68 16 34 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 35 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 36 H 0.37 7.79 5.76 -40.82 -0.24 7.56 16 37 H 0.28 7.28 8.31 -40.82 -0.34 6.94 16 38 H 0.08 0.83 7.30 -51.92 -0.38 0.45 16 39 H 0.07 0.69 8.03 -51.93 -0.42 0.27 16 LS Contribution 320.59 15.07 4.83 4.83 Total: -1.00 -32.68 320.59 -6.81 -39.49 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: -5.81 Total: 12.99 kcal Atomic # 6 Polarization: 15.25 SS G_CDS: -1.12 Total: 14.13 kcal Atomic # 7 Polarization: -59.46 SS G_CDS: -0.17 Total: -59.63 kcal Atomic # 8 Polarization: -26.40 SS G_CDS: 0.17 Total: -26.23 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -4.71 Total: 14.42 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -32.68 -6.81 -39.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336388093.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.553 kcal (2) G-P(sol) polarization free energy of solvation -32.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds