Wall clock time and date at job start Mon Mar 30 2020 01:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 110.88605 * 2 1 4 4 C 1.55156 * 111.00511 * 236.11573 * 2 1 3 5 5 C 1.54324 * 102.94374 * 206.38609 * 4 2 1 6 6 H 1.09000 * 109.88303 * 141.61267 * 5 4 2 7 7 C 1.52995 * 109.88299 * 262.77872 * 5 4 2 8 8 N 1.47019 * 107.27118 * 22.19456 * 5 4 2 9 9 C 1.34776 * 125.65091 * 181.08861 * 8 5 4 10 10 O 1.21585 * 120.00037 * 0.02562 * 9 8 5 11 11 N 1.34779 * 120.00037 * 180.02562 * 9 8 5 12 12 C 1.46498 * 119.99616 * 180.02562 * 11 9 8 13 13 C 1.50701 * 109.46695 * 179.97438 * 12 11 9 14 14 O 1.21295 * 120.00577 * 359.97438 * 13 12 11 15 15 N 1.34782 * 119.99666 * 179.97438 * 13 12 11 16 16 C 1.37103 * 119.99625 * 179.97438 * 15 13 12 17 17 H 1.08001 * 120.00088 * 0.02562 * 16 15 13 18 18 C 1.38955 * 119.99787 * 179.97438 * 16 15 13 19 19 N 1.31404 * 120.00018 * 179.97438 * 18 16 15 20 20 Si 1.86801 * 119.99907 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.46996 * 89.99951 * 20 18 16 22 22 H 1.48502 * 109.47004 * 210.00125 * 20 18 16 23 23 H 1.48496 * 109.46984 * 329.99932 * 20 18 16 24 24 C 1.47536 * 108.71308 * 1.05881 * 8 5 4 25 25 H 1.08996 * 109.46887 * 180.69968 * 1 2 3 26 26 H 1.08996 * 109.46956 * 300.70027 * 1 2 3 27 27 H 1.09003 * 109.46718 * 60.70447 * 1 2 3 28 28 H 1.09001 * 110.72614 * 324.75342 * 4 2 1 29 29 H 1.09000 * 110.71772 * 87.84842 * 4 2 1 30 30 H 1.09001 * 109.47192 * 60.00007 * 7 5 4 31 31 H 1.09007 * 109.46972 * 180.02562 * 7 5 4 32 32 H 1.09004 * 109.47227 * 299.99690 * 7 5 4 33 33 H 0.96996 * 120.00051 * 359.97438 * 11 9 8 34 34 H 1.09001 * 109.47118 * 299.99713 * 12 11 9 35 35 H 1.08995 * 109.47915 * 59.99991 * 12 11 9 36 36 H 0.96997 * 120.00610 * 359.97438 * 15 13 12 37 37 H 0.96995 * 120.00379 * 179.97438 * 19 18 16 38 38 H 1.09008 * 110.40688 * 217.04500 * 24 8 5 39 39 H 1.08997 * 110.36984 * 94.69142 * 24 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0862 -0.8075 -1.2025 5 6 3.4679 -1.2731 -0.6968 6 1 3.6659 -2.2882 -1.0410 7 6 4.5553 -0.3259 -1.2078 8 7 3.4281 -1.2422 0.7725 9 6 4.4494 -1.5591 1.5929 10 8 5.5177 -1.9064 1.1276 11 7 4.2866 -1.4910 2.9291 12 6 5.3970 -1.8349 3.8207 13 6 4.9579 -1.6768 5.2536 14 8 3.8288 -1.3122 5.5054 15 7 5.8201 -1.9405 6.2555 16 6 5.4208 -1.7962 7.5592 17 1 4.4154 -1.4715 7.7832 18 6 6.3094 -2.0686 8.5921 19 7 5.9270 -1.9297 9.8416 20 14 8.0482 -2.6308 8.2045 21 1 8.9363 -1.4466 8.0856 22 1 8.5389 -3.5101 9.2959 23 1 8.0514 -3.3825 6.9239 24 6 2.0852 -0.8062 1.2006 25 1 -0.3633 -1.0276 0.0125 26 1 -0.3633 0.5247 0.8836 27 1 -0.3633 0.5029 -0.8963 28 1 1.4472 -1.6631 -1.4212 29 1 2.1887 -0.1701 -2.0807 30 1 4.3597 0.6824 -0.8428 31 1 5.5279 -0.6610 -0.8473 32 1 4.5530 -0.3245 -2.2978 33 1 3.4345 -1.2136 3.3003 34 1 5.6981 -2.8676 3.6444 35 1 6.2396 -1.1722 3.6241 36 1 6.7229 -2.2325 6.0543 37 1 6.5471 -2.1202 10.5627 38 1 2.1553 -0.1714 2.0840 39 1 1.4522 -1.6702 1.4026 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336388093.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:34 Heat of formation + Delta-G solvation = -91.169798 kcal Electronic energy + Delta-G solvation = -20683.062256 eV Core-core repulsion = 17431.553335 eV Total energy + Delta-G solvation = -3251.508921 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.57717 -40.38914 -38.91792 -36.31042 -35.39789 -33.90700 -33.80397 -32.61106 -29.29360 -27.76644 -26.75994 -26.12239 -23.17647 -21.55478 -21.23270 -20.90840 -20.34941 -19.10236 -17.58639 -17.31721 -17.01080 -16.79090 -16.41504 -15.96007 -15.64375 -15.02840 -14.79066 -14.54220 -14.33270 -14.28218 -14.02834 -13.97047 -13.50063 -13.33089 -13.20326 -12.97694 -12.78504 -12.49459 -12.45658 -12.00847 -11.80156 -11.59433 -11.59098 -11.40696 -11.19992 -10.67640 -10.36455 -10.28872 -9.55510 -8.46575 -6.08645 1.30617 1.33502 1.42708 1.48814 1.76597 2.06844 2.19754 2.68932 3.03786 3.09656 3.53034 3.64724 3.94692 3.98311 4.15543 4.34979 4.36984 4.41049 4.43289 4.54924 4.58914 4.76637 4.85710 4.92197 4.94814 5.07613 5.15381 5.25370 5.29404 5.35519 5.43878 5.48569 5.52786 5.86562 6.01189 6.47611 6.76451 6.88805 7.26516 7.47695 7.76233 8.69854 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.034319 B = 0.003759 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.669109 B = 7447.785777 C = 8146.465674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.095 4.095 3 H 0.085 0.915 4 C -0.112 4.112 5 C 0.144 3.856 6 H 0.065 0.935 7 C -0.157 4.157 8 N -0.633 5.633 9 C 0.719 3.281 10 O -0.624 6.624 11 N -0.728 5.728 12 C 0.138 3.862 13 C 0.446 3.554 14 O -0.614 6.614 15 N -0.576 5.576 16 C -0.332 4.332 17 H 0.064 0.936 18 C -0.007 4.007 19 N -0.925 5.925 20 Si 0.958 3.042 21 H -0.256 1.256 22 H -0.272 1.272 23 H -0.234 1.234 24 C 0.092 3.908 25 H 0.062 0.938 26 H 0.058 0.942 27 H 0.075 0.925 28 H 0.089 0.911 29 H 0.105 0.895 30 H 0.054 0.946 31 H 0.040 0.960 32 H 0.088 0.912 33 H 0.407 0.593 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.392 0.608 37 H 0.282 0.718 38 H 0.067 0.933 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.400 2.165 -23.740 24.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.114 4.114 3 H 0.103 0.897 4 C -0.150 4.150 5 C 0.041 3.959 6 H 0.083 0.917 7 C -0.215 4.215 8 N -0.371 5.371 9 C 0.421 3.579 10 O -0.506 6.506 11 N -0.386 5.386 12 C 0.010 3.990 13 C 0.233 3.767 14 O -0.500 6.500 15 N -0.216 5.216 16 C -0.461 4.461 17 H 0.082 0.918 18 C -0.207 4.207 19 N -0.565 5.565 20 Si 0.778 3.222 21 H -0.181 1.181 22 H -0.197 1.197 23 H -0.157 1.157 24 C -0.030 4.030 25 H 0.081 0.919 26 H 0.077 0.923 27 H 0.094 0.906 28 H 0.108 0.892 29 H 0.123 0.877 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.106 0.894 33 H 0.245 0.755 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.228 0.772 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.267 2.115 -23.606 24.278 hybrid contribution 0.641 -0.206 1.018 1.221 sum -4.626 1.909 -22.587 23.135 Atomic orbital electron populations 1.21688 0.92182 1.02749 1.02906 1.22299 0.97180 0.98920 0.93023 0.89691 1.22805 0.92868 1.00960 0.98337 1.21614 0.97507 0.99482 0.77335 0.91703 1.22112 0.98430 0.98940 1.02047 1.47734 1.11752 1.70639 1.06966 1.15458 0.83306 0.78483 0.80662 1.90853 1.26871 1.56818 1.76032 1.44786 1.16958 1.73070 1.03821 1.20693 0.89857 1.03382 0.85066 1.20458 0.85901 0.82784 0.87535 1.90517 1.21778 1.52807 1.84946 1.41909 1.13714 1.60781 1.05224 1.19037 1.00128 1.45596 0.81349 0.91821 1.26054 1.04002 0.96525 0.94092 1.69771 1.38577 1.48162 0.99955 0.85448 0.76966 0.79669 0.80075 1.18055 1.19722 1.15689 1.22646 0.82520 0.98892 0.98951 0.91920 0.92339 0.90603 0.89197 0.87673 0.92723 0.94123 0.89367 0.75515 0.88142 0.88099 0.77203 0.90871 0.91498 0.90689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.29 71.98 0.67 -0.69 16 2 C -0.10 -1.27 3.64 -9.40 -0.03 -1.30 16 3 H 0.08 1.16 8.14 -2.39 -0.02 1.15 16 4 C -0.11 -1.33 5.96 31.78 0.19 -1.14 16 5 C 0.14 2.87 3.50 45.34 0.16 3.03 16 6 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 7 C -0.16 -3.15 9.05 71.98 0.65 -2.50 16 8 N -0.63 -16.12 3.08 -805.61 -2.48 -18.61 16 9 C 0.72 23.80 8.27 179.05 1.48 25.28 16 10 O -0.62 -24.01 15.25 -3.98 -0.06 -24.07 16 11 N -0.73 -24.68 5.49 -482.30 -2.65 -27.33 16 12 C 0.14 4.84 6.15 85.63 0.53 5.37 16 13 C 0.45 19.99 7.85 87.66 0.69 20.68 16 14 O -0.61 -32.31 15.24 -3.07 -0.05 -32.35 16 15 N -0.58 -26.97 5.09 -306.97 -1.56 -28.53 16 16 C -0.33 -19.03 10.16 84.04 0.85 -18.17 16 17 H 0.06 4.29 7.39 -2.91 -0.02 4.27 16 18 C -0.01 -0.36 5.50 84.93 0.47 0.11 16 19 N -0.92 -54.53 13.96 21.66 0.30 -54.22 16 20 Si 0.96 38.43 27.74 68.60 1.90 40.34 16 21 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 22 H -0.27 -10.80 7.11 99.48 0.71 -10.10 16 23 H -0.23 -8.05 6.52 99.48 0.65 -7.41 16 24 C 0.09 1.83 6.05 86.83 0.53 2.36 16 25 H 0.06 0.60 8.13 -2.39 -0.02 0.58 16 26 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 27 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.09 0.88 8.04 -2.39 -0.02 0.86 16 29 H 0.10 0.85 7.84 -2.39 -0.02 0.83 16 30 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.04 1.09 6.76 -2.38 -0.02 1.08 16 32 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 33 H 0.41 13.91 5.92 -92.71 -0.55 13.36 16 34 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 35 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 36 H 0.39 15.45 5.76 -92.71 -0.53 14.92 16 37 H 0.28 15.15 8.31 -92.71 -0.77 14.38 16 38 H 0.07 1.45 7.30 -2.38 -0.02 1.43 16 39 H 0.07 1.41 8.03 -2.39 -0.02 1.39 16 Total: -1.00 -74.40 320.59 1.50 -72.90 By element: Atomic # 1 Polarization: 38.96 SS G_CDS: -0.08 Total: 38.88 kcal Atomic # 6 Polarization: 26.83 SS G_CDS: 6.18 Total: 33.00 kcal Atomic # 7 Polarization: -122.30 SS G_CDS: -6.39 Total: -128.69 kcal Atomic # 8 Polarization: -56.31 SS G_CDS: -0.11 Total: -56.42 kcal Atomic # 14 Polarization: 38.43 SS G_CDS: 1.90 Total: 40.34 kcal Total: -74.40 1.50 -72.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336388093.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.273 kcal (2) G-P(sol) polarization free energy of solvation -74.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds