Wall clock time and date at job start Mon Mar 30 2020 01:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.87080 * 2 1 4 4 C 1.54315 * 109.88213 * 238.98483 * 2 1 3 5 5 C 1.55156 * 102.94436 * 218.23501 * 4 2 1 6 6 C 1.54906 * 101.61451 * 35.48113 * 5 4 2 7 7 H 1.09001 * 110.37094 * 204.16995 * 6 5 4 8 8 C 1.53003 * 110.36682 * 81.85060 * 6 5 4 9 9 N 1.47017 * 110.01051 * 121.09571 * 2 1 3 10 10 C 1.34776 * 125.65312 * 298.49185 * 9 2 1 11 11 O 1.21588 * 119.99713 * 359.97438 * 10 9 2 12 12 N 1.34777 * 120.00108 * 180.02562 * 10 9 2 13 13 C 1.46497 * 120.00061 * 179.97438 * 12 10 9 14 14 C 1.50695 * 109.47360 * 179.97438 * 13 12 10 15 15 O 1.21293 * 119.99949 * 0.02562 * 14 13 12 16 16 N 1.34775 * 120.00152 * 179.97438 * 14 13 12 17 17 C 1.37101 * 120.00020 * 180.02562 * 16 14 13 18 18 H 1.07995 * 120.00079 * 0.02562 * 17 16 14 19 19 C 1.38955 * 119.99991 * 180.02562 * 17 16 14 20 20 N 1.31406 * 119.99928 * 180.02562 * 19 17 16 21 21 Si 1.86808 * 119.99774 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.46805 * 90.00591 * 21 19 17 23 23 H 1.48503 * 109.46803 * 210.00137 * 21 19 17 24 24 H 1.48492 * 109.47302 * 330.00122 * 21 19 17 25 25 H 1.08998 * 109.47104 * 179.56287 * 1 2 3 26 26 H 1.09007 * 109.47228 * 299.56417 * 1 2 3 27 27 H 1.09002 * 109.47232 * 59.56214 * 1 2 3 28 28 H 1.09001 * 110.72062 * 99.87103 * 4 2 1 29 29 H 1.09005 * 110.72207 * 336.60073 * 4 2 1 30 30 H 1.09002 * 111.00677 * 153.57697 * 5 4 2 31 31 H 1.09002 * 111.00564 * 277.38955 * 5 4 2 32 32 H 1.09002 * 109.47045 * 61.45221 * 8 6 5 33 33 H 1.09003 * 109.47519 * 181.45543 * 8 6 5 34 34 H 1.09003 * 109.47027 * 301.45424 * 8 6 5 35 35 H 0.96999 * 120.00163 * 359.97438 * 12 10 9 36 36 H 1.09002 * 109.47146 * 300.00090 * 13 12 10 37 37 H 1.09008 * 109.47342 * 59.99571 * 13 12 10 38 38 H 0.97004 * 120.00498 * 0.02562 * 16 14 13 39 39 H 0.97001 * 119.99747 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7477 -1.2437 5 6 3.2900 -1.5101 -0.6954 6 6 2.8206 -1.8769 0.7345 7 1 3.6793 -2.0294 1.3883 8 6 1.9452 -3.1313 0.7022 9 7 2.0331 -0.7135 1.1829 10 6 1.8110 -0.3628 2.4652 11 8 1.1434 0.6210 2.7195 12 7 2.3299 -1.1021 3.4655 13 6 2.0890 -0.7207 4.8593 14 6 2.7724 -1.7037 5.7745 15 8 3.3994 -2.6314 5.3084 16 7 2.6876 -1.5514 7.1109 17 6 3.3098 -2.4455 7.9435 18 1 3.8681 -3.2715 7.5285 19 6 3.2220 -2.2888 9.3214 20 7 3.8188 -3.1455 10.1194 21 14 2.2569 -0.8595 10.0393 22 1 0.8447 -1.2699 10.2456 23 1 2.8526 -0.4640 11.3408 24 1 2.3061 0.2914 9.1022 25 1 -0.3633 -1.0276 -0.0078 26 1 -0.3634 0.5071 0.8939 27 1 -0.3634 0.5206 -0.8860 28 1 2.3503 -0.0432 -2.0211 29 1 1.3061 -1.4456 -1.6186 30 1 3.4887 -2.4061 -1.2833 31 1 4.1666 -0.8630 -0.6649 32 1 2.5253 -3.9694 0.3158 33 1 1.6022 -3.3612 1.7110 34 1 1.0843 -2.9571 0.0567 35 1 2.8629 -1.8868 3.2627 36 1 2.4870 0.2785 5.0365 37 1 1.0170 -0.7251 5.0572 38 1 2.1865 -0.8093 7.4838 39 1 3.7578 -3.0358 11.0813 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336588430.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:07 Heat of formation + Delta-G solvation = -65.593139 kcal Electronic energy + Delta-G solvation = -20975.150462 eV Core-core repulsion = 17724.750628 eV Total energy + Delta-G solvation = -3250.399834 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.51606 -38.69937 -37.65731 -34.54900 -33.81521 -32.28182 -31.83957 -31.59670 -28.63466 -27.55189 -24.46719 -24.39512 -22.38861 -20.87965 -19.67777 -19.40522 -18.69957 -17.85209 -16.32165 -15.65267 -15.44198 -15.21545 -14.91300 -14.30203 -14.22980 -13.90062 -13.85285 -13.41005 -13.15782 -12.84391 -12.61736 -12.55168 -12.40403 -12.19780 -12.13722 -11.83664 -11.68477 -11.22421 -11.03071 -10.89427 -10.72292 -10.63146 -10.05613 -9.94483 -9.68655 -8.96110 -8.75129 -8.45960 -8.29122 -6.39913 -3.92366 2.66130 3.00874 3.05555 3.13460 3.35959 3.59363 3.99402 4.04922 4.30696 4.45486 4.61196 4.68652 4.92003 5.08072 5.15119 5.15404 5.30655 5.40567 5.46214 5.51316 5.57672 5.68110 5.76359 5.77847 5.82254 5.83084 5.88009 6.01885 6.11785 6.21915 6.40570 6.69853 7.20597 7.46149 8.01578 8.17392 8.45699 8.78752 8.82848 9.31058 9.64983 10.72301 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.036505 B = 0.003959 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.829655 B = 7070.977493 C = 7609.264918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.154 3.846 3 H 0.072 0.928 4 C -0.128 4.128 5 C -0.127 4.127 6 C 0.122 3.878 7 H 0.084 0.916 8 C -0.163 4.163 9 N -0.630 5.630 10 C 0.725 3.275 11 O -0.595 6.595 12 N -0.724 5.724 13 C 0.126 3.874 14 C 0.439 3.561 15 O -0.579 6.579 16 N -0.577 5.577 17 C -0.310 4.310 18 H 0.121 0.879 19 C 0.045 3.955 20 N -0.875 5.875 21 Si 0.879 3.121 22 H -0.269 1.269 23 H -0.275 1.275 24 H -0.267 1.267 25 H 0.054 0.946 26 H 0.072 0.928 27 H 0.060 0.940 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.407 0.593 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.374 0.626 39 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.449 4.995 -20.521 21.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.050 3.950 3 H 0.090 0.910 4 C -0.166 4.166 5 C -0.165 4.165 6 C 0.018 3.982 7 H 0.102 0.898 8 C -0.221 4.221 9 N -0.368 5.368 10 C 0.426 3.574 11 O -0.474 6.474 12 N -0.382 5.382 13 C -0.003 4.003 14 C 0.225 3.775 15 O -0.464 6.464 16 N -0.214 5.214 17 C -0.438 4.438 18 H 0.139 0.861 19 C -0.159 4.159 20 N -0.514 5.514 21 Si 0.705 3.295 22 H -0.194 1.194 23 H -0.200 1.200 24 H -0.192 1.192 25 H 0.073 0.927 26 H 0.091 0.909 27 H 0.079 0.921 28 H 0.099 0.901 29 H 0.096 0.904 30 H 0.102 0.898 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.245 0.755 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.208 0.792 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -4.471 5.041 -20.275 21.365 hybrid contribution -0.450 0.642 0.789 1.113 sum -4.921 5.684 -19.486 20.886 Atomic orbital electron populations 1.22180 0.95019 1.02099 1.02842 1.21318 0.94347 0.95885 0.83432 0.90973 1.22735 0.97783 0.99548 0.96496 1.22775 0.97920 1.00952 0.94826 1.21885 0.93888 0.86351 0.96066 0.89789 1.22188 1.00250 0.96767 1.02939 1.47704 1.55979 1.29520 1.03643 1.15337 0.80066 0.82650 0.79310 1.90882 1.45073 1.28797 1.82670 1.44803 1.57040 1.32044 1.04353 1.20800 1.00927 0.98240 0.80314 1.19661 0.86469 0.88272 0.83084 1.90530 1.46203 1.34545 1.75091 1.42115 1.47498 1.26650 1.05174 1.19440 1.29541 1.07660 0.87189 0.86103 1.25060 0.97356 0.97666 0.95796 1.69617 1.41993 1.35520 1.04271 0.86674 0.80794 0.82160 0.79898 1.19390 1.19992 1.19195 0.92704 0.90927 0.92088 0.90137 0.90416 0.89772 0.90507 0.91370 0.91908 0.92191 0.75469 0.89932 0.89933 0.79228 0.91403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.75 9.12 37.16 0.34 -1.41 16 2 C 0.15 1.66 3.45 -66.96 -0.23 1.43 16 3 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 4 C -0.13 -0.94 6.10 -24.90 -0.15 -1.09 16 5 C -0.13 -0.97 6.56 -24.58 -0.16 -1.13 16 6 C 0.12 1.28 3.02 -66.39 -0.20 1.08 16 7 H 0.08 0.94 7.30 -51.93 -0.38 0.56 16 8 C -0.16 -1.61 9.49 37.16 0.35 -1.25 16 9 N -0.63 -8.24 2.72 -161.21 -0.44 -8.68 16 10 C 0.72 12.17 8.28 -86.92 -0.72 11.45 16 11 O -0.60 -11.62 15.37 5.29 0.08 -11.54 16 12 N -0.72 -12.44 5.49 -66.41 -0.36 -12.80 16 13 C 0.13 2.28 6.15 -5.20 -0.03 2.25 16 14 C 0.44 9.83 7.85 -10.99 -0.09 9.74 16 15 O -0.58 -14.78 15.24 5.55 0.08 -14.69 16 16 N -0.58 -13.56 5.09 -10.96 -0.06 -13.62 16 17 C -0.31 -8.59 10.16 -14.93 -0.15 -8.74 16 18 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 19 C 0.05 1.22 5.50 -17.47 -0.10 1.13 16 20 N -0.87 -25.07 13.96 55.50 0.77 -24.30 16 21 Si 0.88 19.14 27.74 -169.99 -4.71 14.43 16 22 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 23 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 24 H -0.27 -5.34 6.52 56.52 0.37 -4.97 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.07 0.99 6.86 -51.92 -0.36 0.64 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.08 0.52 7.47 -51.93 -0.39 0.13 16 30 H 0.08 0.50 8.04 -51.93 -0.42 0.09 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.56 7.47 -51.93 -0.39 0.17 16 35 H 0.41 6.95 5.92 -40.82 -0.24 6.71 16 36 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 37 H 0.08 1.41 8.14 -51.92 -0.42 0.98 16 38 H 0.37 7.80 5.76 -40.82 -0.24 7.56 16 39 H 0.28 7.27 8.31 -40.82 -0.34 6.94 16 LS Contribution 319.81 15.07 4.82 4.82 Total: -1.00 -32.63 319.81 -6.72 -39.35 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: -5.77 Total: 13.60 kcal Atomic # 6 Polarization: 14.58 SS G_CDS: -1.14 Total: 13.44 kcal Atomic # 7 Polarization: -59.32 SS G_CDS: -0.08 Total: -59.41 kcal Atomic # 8 Polarization: -26.40 SS G_CDS: 0.17 Total: -26.23 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -4.71 Total: 14.43 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -32.63 -6.72 -39.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336588430.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.245 kcal (2) G-P(sol) polarization free energy of solvation -32.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds