Wall clock time and date at job start Mon Mar 30 2020 01:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.87080 * 2 1 4 4 C 1.54315 * 109.88213 * 238.98483 * 2 1 3 5 5 C 1.55156 * 102.94436 * 218.23501 * 4 2 1 6 6 C 1.54906 * 101.61451 * 35.48113 * 5 4 2 7 7 H 1.09001 * 110.37094 * 204.16995 * 6 5 4 8 8 C 1.53003 * 110.36682 * 81.85060 * 6 5 4 9 9 N 1.47017 * 110.01051 * 121.09571 * 2 1 3 10 10 C 1.34776 * 125.65312 * 298.49185 * 9 2 1 11 11 O 1.21588 * 119.99713 * 359.97438 * 10 9 2 12 12 N 1.34777 * 120.00108 * 180.02562 * 10 9 2 13 13 C 1.46497 * 120.00061 * 179.97438 * 12 10 9 14 14 C 1.50695 * 109.47360 * 179.97438 * 13 12 10 15 15 O 1.21293 * 119.99949 * 0.02562 * 14 13 12 16 16 N 1.34775 * 120.00152 * 179.97438 * 14 13 12 17 17 C 1.37101 * 120.00020 * 180.02562 * 16 14 13 18 18 H 1.07995 * 120.00079 * 0.02562 * 17 16 14 19 19 C 1.38955 * 119.99991 * 180.02562 * 17 16 14 20 20 N 1.31406 * 119.99928 * 180.02562 * 19 17 16 21 21 Si 1.86808 * 119.99774 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.46805 * 90.00591 * 21 19 17 23 23 H 1.48503 * 109.46803 * 210.00137 * 21 19 17 24 24 H 1.48492 * 109.47302 * 330.00122 * 21 19 17 25 25 H 1.08998 * 109.47104 * 179.56287 * 1 2 3 26 26 H 1.09007 * 109.47228 * 299.56417 * 1 2 3 27 27 H 1.09002 * 109.47232 * 59.56214 * 1 2 3 28 28 H 1.09001 * 110.72062 * 99.87103 * 4 2 1 29 29 H 1.09005 * 110.72207 * 336.60073 * 4 2 1 30 30 H 1.09002 * 111.00677 * 153.57697 * 5 4 2 31 31 H 1.09002 * 111.00564 * 277.38955 * 5 4 2 32 32 H 1.09002 * 109.47045 * 61.45221 * 8 6 5 33 33 H 1.09003 * 109.47519 * 181.45543 * 8 6 5 34 34 H 1.09003 * 109.47027 * 301.45424 * 8 6 5 35 35 H 0.96999 * 120.00163 * 359.97438 * 12 10 9 36 36 H 1.09002 * 109.47146 * 300.00090 * 13 12 10 37 37 H 1.09008 * 109.47342 * 59.99571 * 13 12 10 38 38 H 0.97004 * 120.00498 * 0.02562 * 16 14 13 39 39 H 0.97001 * 119.99747 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7477 -1.2437 5 6 3.2900 -1.5101 -0.6954 6 6 2.8206 -1.8769 0.7345 7 1 3.6793 -2.0294 1.3883 8 6 1.9452 -3.1313 0.7022 9 7 2.0331 -0.7135 1.1829 10 6 1.8110 -0.3628 2.4652 11 8 1.1434 0.6210 2.7195 12 7 2.3299 -1.1021 3.4655 13 6 2.0890 -0.7207 4.8593 14 6 2.7724 -1.7037 5.7745 15 8 3.3994 -2.6314 5.3084 16 7 2.6876 -1.5514 7.1109 17 6 3.3098 -2.4455 7.9435 18 1 3.8681 -3.2715 7.5285 19 6 3.2220 -2.2888 9.3214 20 7 3.8188 -3.1455 10.1194 21 14 2.2569 -0.8595 10.0393 22 1 0.8447 -1.2699 10.2456 23 1 2.8526 -0.4640 11.3408 24 1 2.3061 0.2914 9.1022 25 1 -0.3633 -1.0276 -0.0078 26 1 -0.3634 0.5071 0.8939 27 1 -0.3634 0.5206 -0.8860 28 1 2.3503 -0.0432 -2.0211 29 1 1.3061 -1.4456 -1.6186 30 1 3.4887 -2.4061 -1.2833 31 1 4.1666 -0.8630 -0.6649 32 1 2.5253 -3.9694 0.3158 33 1 1.6022 -3.3612 1.7110 34 1 1.0843 -2.9571 0.0567 35 1 2.8629 -1.8868 3.2627 36 1 2.4870 0.2785 5.0365 37 1 1.0170 -0.7251 5.0572 38 1 2.1865 -0.8093 7.4838 39 1 3.7578 -3.0358 11.0813 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336588430.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:36:06 Heat of formation + Delta-G solvation = -89.656357 kcal Electronic energy + Delta-G solvation = -20976.193921 eV Core-core repulsion = 17724.750628 eV Total energy + Delta-G solvation = -3251.443293 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.64652 -40.40282 -38.88819 -36.31751 -35.43318 -33.86108 -33.16559 -32.63501 -29.50042 -29.08231 -26.26275 -25.19650 -23.50566 -21.72228 -21.42693 -20.82558 -20.35520 -19.13063 -17.65095 -17.11695 -16.95734 -16.79660 -16.28456 -15.78018 -15.59941 -14.98721 -14.80367 -14.71848 -14.40502 -14.31223 -14.05358 -13.84100 -13.49779 -13.35825 -13.21682 -12.98496 -12.78186 -12.47959 -12.45889 -12.01049 -11.79645 -11.60710 -11.59606 -11.43703 -11.25741 -10.67680 -10.36492 -10.28935 -9.54706 -8.46720 -6.08736 1.30383 1.33215 1.42626 1.50463 1.76384 2.08495 2.19513 2.68371 3.02814 3.09495 3.57400 3.68733 3.97715 4.03228 4.12894 4.31799 4.33551 4.35978 4.40579 4.50897 4.66661 4.73187 4.82273 4.92089 5.02385 5.10980 5.14471 5.23112 5.26916 5.31953 5.44550 5.46922 5.50921 5.86507 6.04545 6.47471 6.76304 6.91334 7.26420 7.49691 7.75986 8.69685 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.036505 B = 0.003959 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.829655 B = 7070.977493 C = 7609.264918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.143 3.857 3 H 0.063 0.937 4 C -0.115 4.115 5 C -0.118 4.118 6 C 0.112 3.888 7 H 0.071 0.929 8 C -0.157 4.157 9 N -0.628 5.628 10 C 0.720 3.280 11 O -0.626 6.626 12 N -0.728 5.728 13 C 0.138 3.862 14 C 0.446 3.554 15 O -0.614 6.614 16 N -0.576 5.576 17 C -0.332 4.332 18 H 0.064 0.936 19 C -0.006 4.006 20 N -0.925 5.925 21 Si 0.958 3.042 22 H -0.256 1.256 23 H -0.272 1.272 24 H -0.234 1.234 25 H 0.056 0.944 26 H 0.037 0.963 27 H 0.086 0.914 28 H 0.103 0.897 29 H 0.091 0.909 30 H 0.109 0.891 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.034 0.966 34 H 0.069 0.931 35 H 0.407 0.593 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.392 0.608 39 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.586 6.675 -22.444 24.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.040 3.960 3 H 0.081 0.919 4 C -0.153 4.153 5 C -0.156 4.156 6 C 0.009 3.991 7 H 0.089 0.911 8 C -0.216 4.216 9 N -0.365 5.365 10 C 0.421 3.579 11 O -0.508 6.508 12 N -0.387 5.387 13 C 0.009 3.991 14 C 0.233 3.767 15 O -0.500 6.500 16 N -0.216 5.216 17 C -0.461 4.461 18 H 0.082 0.918 19 C -0.206 4.206 20 N -0.564 5.564 21 Si 0.778 3.222 22 H -0.181 1.181 23 H -0.197 1.197 24 H -0.157 1.157 25 H 0.075 0.925 26 H 0.056 0.944 27 H 0.105 0.895 28 H 0.122 0.878 29 H 0.110 0.890 30 H 0.127 0.873 31 H 0.097 0.903 32 H 0.106 0.894 33 H 0.053 0.947 34 H 0.088 0.912 35 H 0.244 0.756 36 H 0.118 0.882 37 H 0.118 0.882 38 H 0.228 0.772 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.604 6.715 -22.257 23.914 hybrid contribution -0.036 0.021 1.283 1.284 sum -5.640 6.737 -20.974 22.740 Atomic orbital electron populations 1.22117 0.94998 1.02042 1.02354 1.21620 0.94473 0.95948 0.83991 0.91855 1.22737 0.97672 0.99817 0.95072 1.22786 0.97988 1.02099 0.92694 1.22136 0.93330 0.85782 0.97844 0.91053 1.22142 1.00759 0.97124 1.01550 1.47847 1.55474 1.30222 1.02940 1.15477 0.79835 0.82246 0.80303 1.90852 1.46429 1.30052 1.83450 1.44797 1.57400 1.32245 1.04208 1.20690 1.01288 0.97201 0.79879 1.20446 0.85052 0.88019 0.83153 1.90516 1.47413 1.36239 1.75816 1.41910 1.47854 1.26690 1.05185 1.19036 1.30799 1.07810 0.88458 0.91804 1.26047 0.98067 1.01017 0.95496 1.69774 1.43664 1.38021 1.04976 0.85456 0.79004 0.78477 0.79264 1.18055 1.19689 1.15741 0.92535 0.94383 0.89502 0.87817 0.89043 0.87279 0.90317 0.89370 0.94706 0.91239 0.75555 0.88205 0.88186 0.77227 0.90871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.13 9.12 71.98 0.66 -2.48 16 2 C 0.14 2.82 3.45 45.34 0.16 2.98 16 3 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 4 C -0.12 -1.29 6.10 31.78 0.19 -1.10 16 5 C -0.12 -1.43 6.56 31.98 0.21 -1.22 16 6 C 0.11 2.20 3.02 45.46 0.14 2.34 16 7 H 0.07 1.58 7.30 -2.39 -0.02 1.56 16 8 C -0.16 -2.88 9.49 71.98 0.68 -2.20 16 9 N -0.63 -15.87 2.72 -782.21 -2.13 -18.00 16 10 C 0.72 23.95 8.28 179.05 1.48 25.43 16 11 O -0.63 -24.29 15.37 -3.99 -0.06 -24.35 16 12 N -0.73 -24.94 5.49 -482.30 -2.65 -27.59 16 13 C 0.14 4.87 6.15 85.63 0.53 5.40 16 14 C 0.45 20.10 7.85 87.66 0.69 20.79 16 15 O -0.61 -32.38 15.24 -3.07 -0.05 -32.42 16 16 N -0.58 -27.08 5.09 -306.99 -1.56 -28.65 16 17 C -0.33 -19.06 10.16 84.04 0.85 -18.20 16 18 H 0.06 4.31 7.39 -2.91 -0.02 4.29 16 19 C -0.01 -0.33 5.50 84.93 0.47 0.13 16 20 N -0.92 -54.54 13.96 21.66 0.30 -54.24 16 21 Si 0.96 38.52 27.74 68.60 1.90 40.43 16 22 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 23 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 24 H -0.23 -8.11 6.52 99.48 0.65 -7.46 16 25 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 26 H 0.04 1.03 6.86 -2.38 -0.02 1.01 16 27 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.09 0.83 7.47 -2.38 -0.02 0.81 16 30 H 0.11 0.85 8.04 -2.39 -0.02 0.83 16 31 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.07 1.13 7.47 -2.39 -0.02 1.11 16 35 H 0.41 14.11 5.92 -92.71 -0.55 13.56 16 36 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16 37 H 0.10 3.25 8.14 -2.38 -0.02 3.23 16 38 H 0.39 15.54 5.76 -92.71 -0.53 15.00 16 39 H 0.28 15.16 8.31 -92.71 -0.77 14.39 16 Total: -1.00 -74.99 319.81 1.74 -73.25 By element: Atomic # 1 Polarization: 39.77 SS G_CDS: -0.08 Total: 39.69 kcal Atomic # 6 Polarization: 25.82 SS G_CDS: 6.06 Total: 31.88 kcal Atomic # 7 Polarization: -122.44 SS G_CDS: -6.03 Total: -128.47 kcal Atomic # 8 Polarization: -56.66 SS G_CDS: -0.11 Total: -56.77 kcal Atomic # 14 Polarization: 38.52 SS G_CDS: 1.90 Total: 40.43 kcal Total: -74.99 1.74 -73.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336588430.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.410 kcal (2) G-P(sol) polarization free energy of solvation -74.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds