Wall clock time and date at job start Mon Mar 30 2020 00:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34772 * 119.99992 * 2 1 4 4 O 1.21592 * 119.99810 * 179.97438 * 3 2 1 5 5 N 1.34780 * 120.00308 * 359.97438 * 3 2 1 6 6 C 1.46491 * 120.00091 * 179.97438 * 5 3 2 7 7 C 1.50702 * 109.46957 * 179.97438 * 6 5 3 8 8 O 1.21293 * 120.00255 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99928 * 179.72354 * 7 6 5 10 10 C 1.37101 * 120.00327 * 180.27606 * 9 7 6 11 11 H 1.08001 * 119.99426 * 0.02562 * 10 9 7 12 12 C 1.38942 * 120.00412 * 180.02562 * 10 9 7 13 13 N 1.31414 * 120.00005 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 120.00057 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.46867 * 90.00263 * 14 12 10 16 16 H 1.48501 * 109.47216 * 210.00120 * 14 12 10 17 17 H 1.48499 * 109.47135 * 330.00462 * 14 12 10 18 18 C 1.46500 * 119.99882 * 179.97438 * 2 1 3 19 19 H 1.09002 * 115.55105 * 205.72648 * 18 2 1 20 20 C 1.53003 * 117.49762 * 351.39451 * 18 2 1 21 21 C 1.53001 * 117.49768 * 60.01587 * 18 2 1 22 22 C 1.52998 * 117.49843 * 359.97438 * 21 18 2 23 23 C 1.52996 * 117.49903 * 145.01977 * 21 18 2 24 24 H 1.08992 * 109.46815 * 90.00160 * 1 2 3 25 25 H 1.09000 * 109.47345 * 210.00213 * 1 2 3 26 26 H 1.09002 * 109.47184 * 330.00204 * 1 2 3 27 27 H 0.97003 * 119.99349 * 0.02562 * 5 3 2 28 28 H 1.09004 * 109.47166 * 60.00164 * 6 5 3 29 29 H 1.09000 * 109.47767 * 300.00232 * 6 5 3 30 30 H 0.97000 * 120.00317 * 0.28382 * 9 7 6 31 31 H 0.96996 * 120.00330 * 179.97438 * 13 12 10 32 32 H 1.09007 * 117.49693 * 214.97865 * 20 18 2 33 33 H 1.08991 * 117.50283 * 0.02562 * 20 18 2 34 34 H 1.09000 * 109.47198 * 60.00292 * 22 21 18 35 35 H 1.09002 * 109.47294 * 180.02562 * 22 21 18 36 36 H 1.08998 * 109.47382 * 300.00164 * 22 21 18 37 37 H 1.09003 * 109.47177 * 59.99788 * 23 21 18 38 38 H 1.09002 * 109.47088 * 180.02562 * 23 21 18 39 39 H 1.08997 * 109.47414 * 299.99999 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3548 1.1671 0.0005 5 7 1.4651 2.3344 -0.0005 6 6 2.1976 3.6030 0.0000 7 6 1.2183 4.7485 -0.0013 8 8 0.0258 4.5269 -0.0022 9 7 1.6675 6.0192 0.0045 10 6 0.7767 7.0613 0.0090 11 1 -0.2851 6.8639 0.0082 12 6 1.2398 8.3713 0.0145 13 7 2.5318 8.6114 0.0149 14 14 0.0259 9.7911 0.0198 15 1 -0.2962 10.1616 1.4213 16 1 0.6261 10.9581 -0.6753 17 1 -1.2171 9.3823 -0.6822 18 6 2.1975 -1.2687 0.0006 19 1 3.1998 -1.2328 0.4274 20 6 1.3886 -2.5514 0.2042 21 6 1.9633 -2.2202 -1.1745 22 6 0.9817 -1.7740 -2.2599 23 6 3.1542 -3.0484 -1.6611 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 0.4950 2.3344 -0.0005 28 1 2.8249 3.6608 -0.8895 29 1 2.8236 3.6609 0.8905 30 1 2.6212 6.1965 0.0055 31 1 2.8552 9.5259 0.0184 32 1 1.8589 -3.3594 0.7647 33 1 0.3115 -2.4513 0.3373 34 1 1.3330 -0.8444 -2.7077 35 1 0.9141 -2.5447 -3.0278 36 1 -0.0017 -1.6153 -1.8175 37 1 3.5151 -3.6783 -0.8480 38 1 2.8434 -3.6756 -2.4966 39 1 3.9526 -2.3811 -1.9855 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358279132.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:50 Heat of formation + Delta-G solvation = -35.216055 kcal Electronic energy + Delta-G solvation = -20529.425412 eV Core-core repulsion = 17280.342828 eV Total energy + Delta-G solvation = -3249.082584 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.37721 -38.67718 -37.85607 -34.57971 -34.22151 -33.46217 -31.36341 -29.35591 -28.04941 -27.29833 -26.80080 -24.52203 -22.13480 -19.97592 -19.66036 -19.00681 -18.32770 -17.80554 -16.44886 -15.83075 -15.51789 -15.03811 -14.73187 -14.49053 -14.15535 -13.96849 -13.83491 -13.52398 -13.25111 -13.02653 -12.72187 -12.37617 -12.24362 -12.07509 -11.92707 -11.75540 -11.62569 -11.24272 -11.12385 -10.71161 -10.45702 -10.31504 -10.04339 -9.94848 -9.63100 -8.84139 -8.61987 -8.25674 -8.09214 -6.50761 -3.92843 2.63115 3.11933 3.22333 3.23889 3.27679 3.68966 3.76691 4.02541 4.19390 4.48221 4.60216 4.64846 4.89295 4.90582 4.96848 5.17975 5.28464 5.43571 5.46736 5.50769 5.64902 5.72657 5.74521 5.78030 5.80043 5.93707 6.00260 6.02190 6.09025 6.14315 6.49826 6.76437 7.05175 7.46550 7.93072 8.16160 8.45885 8.78483 9.05233 9.40262 9.88108 10.66176 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.046738 B = 0.003271 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.939155 B = 8559.089093 C = 8818.477573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.604 5.604 3 C 0.710 3.290 4 O -0.593 6.593 5 N -0.723 5.723 6 C 0.127 3.873 7 C 0.429 3.571 8 O -0.599 6.599 9 N -0.549 5.549 10 C -0.305 4.305 11 H 0.105 0.895 12 C 0.026 3.974 13 N -0.895 5.895 14 Si 0.933 3.067 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.269 1.269 18 C 0.114 3.886 19 H 0.132 0.868 20 C -0.183 4.183 21 C -0.144 4.144 22 C -0.114 4.114 23 C -0.112 4.112 24 H 0.060 0.940 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.407 0.593 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.396 0.604 31 H 0.274 0.726 32 H 0.102 0.898 33 H 0.100 0.900 34 H 0.059 0.941 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.447 -19.564 -1.273 19.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.340 5.340 3 C 0.411 3.589 4 O -0.472 6.472 5 N -0.382 5.382 6 C -0.001 4.001 7 C 0.215 3.785 8 O -0.486 6.486 9 N -0.184 5.184 10 C -0.434 4.434 11 H 0.123 0.877 12 C -0.177 4.177 13 N -0.535 5.535 14 Si 0.760 3.240 15 H -0.203 1.203 16 H -0.208 1.208 17 H -0.193 1.193 18 C 0.008 3.992 19 H 0.150 0.850 20 C -0.221 4.221 21 C -0.146 4.146 22 C -0.171 4.171 23 C -0.170 4.170 24 H 0.078 0.922 25 H 0.094 0.906 26 H 0.093 0.907 27 H 0.246 0.754 28 H 0.100 0.900 29 H 0.100 0.900 30 H 0.230 0.770 31 H 0.084 0.916 32 H 0.120 0.880 33 H 0.118 0.882 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -1.255 -19.427 -1.269 19.508 hybrid contribution -0.498 0.897 0.041 1.027 sum -1.753 -18.529 -1.228 18.653 Atomic orbital electron populations 1.21968 0.79942 1.03397 1.02165 1.46263 1.05839 1.03754 1.78118 1.15685 0.85130 0.80074 0.78008 1.90893 1.11498 1.86333 1.58454 1.44932 1.11013 1.03595 1.78683 1.20797 0.94018 0.82127 1.03172 1.19756 0.89123 0.84160 0.85479 1.90483 1.16525 1.84127 1.57418 1.41786 1.10017 1.03921 1.62641 1.19725 0.91415 0.84040 1.48254 0.87694 1.25323 0.96684 0.98898 0.96813 1.69615 1.12544 1.21983 1.49333 0.85814 0.79937 0.79797 0.78481 1.20277 1.20800 1.19324 1.21583 0.96938 0.79178 1.01495 0.85022 1.23717 1.00477 0.98524 0.99407 1.22101 0.99480 1.02605 0.90434 1.21388 0.97528 1.01140 0.97017 1.21324 0.96046 0.98654 1.00935 0.92185 0.90575 0.90749 0.75374 0.90000 0.89992 0.76999 0.91587 0.87966 0.88177 0.92164 0.92431 0.92193 0.92427 0.92216 0.91926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.71 8.54 59.85 0.51 1.22 16 2 N -0.60 -8.09 2.88 -179.66 -0.52 -8.61 16 3 C 0.71 12.26 8.28 -86.92 -0.72 11.54 16 4 O -0.59 -12.05 16.05 5.28 0.08 -11.96 16 5 N -0.72 -12.74 5.39 -66.42 -0.36 -13.10 16 6 C 0.13 2.43 6.15 -5.20 -0.03 2.40 16 7 C 0.43 9.95 7.85 -10.98 -0.09 9.86 16 8 O -0.60 -15.36 15.24 5.55 0.08 -15.27 16 9 N -0.55 -13.70 5.29 -10.96 -0.06 -13.76 16 10 C -0.30 -8.31 9.68 -14.93 -0.14 -8.45 16 11 H 0.11 2.97 7.16 -52.49 -0.38 2.59 16 12 C 0.03 0.67 5.50 -17.47 -0.10 0.58 16 13 N -0.89 -23.97 13.05 55.50 0.72 -23.25 16 14 Si 0.93 20.56 29.55 -169.99 -5.02 15.53 16 15 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 16 H -0.28 -6.11 7.11 56.52 0.40 -5.70 16 17 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 18 C 0.11 1.33 5.92 -67.93 -0.40 0.93 16 19 H 0.13 1.70 7.67 -51.93 -0.40 1.31 16 20 C -0.18 -1.56 9.10 -26.73 -0.24 -1.80 16 21 C -0.14 -1.40 2.70 -154.51 -0.42 -1.81 16 22 C -0.11 -1.08 8.59 37.16 0.32 -0.76 16 23 C -0.11 -0.95 9.85 37.16 0.37 -0.59 16 24 H 0.06 0.58 6.40 -51.93 -0.33 0.25 16 25 H 0.08 0.62 5.80 -51.93 -0.30 0.31 16 26 H 0.07 0.82 6.36 -51.93 -0.33 0.49 16 27 H 0.41 6.96 5.17 -40.82 -0.21 6.75 16 28 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 29 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 30 H 0.40 9.53 7.90 -40.82 -0.32 9.20 16 31 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 32 H 0.10 0.73 8.05 -51.93 -0.42 0.31 16 33 H 0.10 0.76 5.93 -51.93 -0.31 0.46 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.47 7.92 -51.93 -0.41 0.06 16 36 H 0.06 0.52 5.64 -51.93 -0.29 0.22 16 37 H 0.06 0.42 7.90 -51.93 -0.41 0.01 16 38 H 0.06 0.44 7.92 -51.93 -0.41 0.03 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 321.65 15.07 4.85 4.85 Total: -1.00 -31.56 321.65 -6.51 -38.07 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: -5.35 Total: 14.38 kcal Atomic # 6 Polarization: 14.06 SS G_CDS: -0.95 Total: 13.12 kcal Atomic # 7 Polarization: -58.50 SS G_CDS: -0.21 Total: -58.71 kcal Atomic # 8 Polarization: -27.41 SS G_CDS: 0.17 Total: -27.24 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.53 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.56 -6.51 -38.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358279132.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.858 kcal (2) G-P(sol) polarization free energy of solvation -31.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds