Wall clock time and date at job start Mon Mar 30 2020 00:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34772 * 119.99992 * 2 1 4 4 O 1.21592 * 119.99810 * 179.97438 * 3 2 1 5 5 N 1.34780 * 120.00308 * 359.97438 * 3 2 1 6 6 C 1.46491 * 120.00091 * 179.97438 * 5 3 2 7 7 C 1.50702 * 109.46957 * 179.97438 * 6 5 3 8 8 O 1.21293 * 120.00255 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99928 * 179.72354 * 7 6 5 10 10 C 1.37101 * 120.00327 * 180.27606 * 9 7 6 11 11 H 1.08001 * 119.99426 * 0.02562 * 10 9 7 12 12 C 1.38942 * 120.00412 * 180.02562 * 10 9 7 13 13 N 1.31414 * 120.00005 * 0.02562 * 12 10 9 14 14 Si 1.86803 * 120.00057 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.46867 * 90.00263 * 14 12 10 16 16 H 1.48501 * 109.47216 * 210.00120 * 14 12 10 17 17 H 1.48499 * 109.47135 * 330.00462 * 14 12 10 18 18 C 1.46500 * 119.99882 * 179.97438 * 2 1 3 19 19 H 1.09002 * 115.55105 * 205.72648 * 18 2 1 20 20 C 1.53003 * 117.49762 * 351.39451 * 18 2 1 21 21 C 1.53001 * 117.49768 * 60.01587 * 18 2 1 22 22 C 1.52998 * 117.49843 * 359.97438 * 21 18 2 23 23 C 1.52996 * 117.49903 * 145.01977 * 21 18 2 24 24 H 1.08992 * 109.46815 * 90.00160 * 1 2 3 25 25 H 1.09000 * 109.47345 * 210.00213 * 1 2 3 26 26 H 1.09002 * 109.47184 * 330.00204 * 1 2 3 27 27 H 0.97003 * 119.99349 * 0.02562 * 5 3 2 28 28 H 1.09004 * 109.47166 * 60.00164 * 6 5 3 29 29 H 1.09000 * 109.47767 * 300.00232 * 6 5 3 30 30 H 0.97000 * 120.00317 * 0.28382 * 9 7 6 31 31 H 0.96996 * 120.00330 * 179.97438 * 13 12 10 32 32 H 1.09007 * 117.49693 * 214.97865 * 20 18 2 33 33 H 1.08991 * 117.50283 * 0.02562 * 20 18 2 34 34 H 1.09000 * 109.47198 * 60.00292 * 22 21 18 35 35 H 1.09002 * 109.47294 * 180.02562 * 22 21 18 36 36 H 1.08998 * 109.47382 * 300.00164 * 22 21 18 37 37 H 1.09003 * 109.47177 * 59.99788 * 23 21 18 38 38 H 1.09002 * 109.47088 * 180.02562 * 23 21 18 39 39 H 1.08997 * 109.47414 * 299.99999 * 23 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3548 1.1671 0.0005 5 7 1.4651 2.3344 -0.0005 6 6 2.1976 3.6030 0.0000 7 6 1.2183 4.7485 -0.0013 8 8 0.0258 4.5269 -0.0022 9 7 1.6675 6.0192 0.0045 10 6 0.7767 7.0613 0.0090 11 1 -0.2851 6.8639 0.0082 12 6 1.2398 8.3713 0.0145 13 7 2.5318 8.6114 0.0149 14 14 0.0259 9.7911 0.0198 15 1 -0.2962 10.1616 1.4213 16 1 0.6261 10.9581 -0.6753 17 1 -1.2171 9.3823 -0.6822 18 6 2.1975 -1.2687 0.0006 19 1 3.1998 -1.2328 0.4274 20 6 1.3886 -2.5514 0.2042 21 6 1.9633 -2.2202 -1.1745 22 6 0.9817 -1.7740 -2.2599 23 6 3.1542 -3.0484 -1.6611 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3634 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 0.4950 2.3344 -0.0005 28 1 2.8249 3.6608 -0.8895 29 1 2.8236 3.6609 0.8905 30 1 2.6212 6.1965 0.0055 31 1 2.8552 9.5259 0.0184 32 1 1.8589 -3.3594 0.7647 33 1 0.3115 -2.4513 0.3373 34 1 1.3330 -0.8444 -2.7077 35 1 0.9141 -2.5447 -3.0278 36 1 -0.0017 -1.6153 -1.8175 37 1 3.5151 -3.6783 -0.8480 38 1 2.8434 -3.6756 -2.4966 39 1 3.9526 -2.3811 -1.9855 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358279132.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:50 Heat of formation + Delta-G solvation = -57.099754 kcal Electronic energy + Delta-G solvation = -20530.374361 eV Core-core repulsion = 17280.342828 eV Total energy + Delta-G solvation = -3250.031533 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.57674 -40.25475 -39.17601 -36.26782 -35.66691 -34.89345 -33.36651 -30.20170 -29.23627 -28.47020 -27.68563 -26.39740 -23.20440 -21.42553 -21.00606 -20.25161 -19.88684 -19.29100 -17.70426 -17.24850 -17.07541 -16.62785 -16.15186 -16.06417 -15.50125 -15.33044 -15.01162 -14.64148 -14.39908 -14.04313 -13.80866 -13.58236 -13.54449 -13.45925 -13.13268 -12.96942 -12.90491 -12.46052 -12.45410 -12.12508 -11.97942 -11.57871 -11.56799 -11.35919 -10.81785 -10.56764 -10.29106 -10.09699 -9.26456 -8.51135 -6.01597 1.36386 1.41002 1.46315 1.56777 1.87850 2.00234 2.27687 2.78419 2.88449 3.15790 3.16099 3.65528 3.87337 3.89892 4.11146 4.19476 4.20854 4.39776 4.42706 4.48728 4.67260 4.73553 4.79001 4.92896 4.96188 5.05534 5.06387 5.07646 5.28161 5.29327 5.38386 5.42532 5.50100 5.88853 5.91680 6.47241 6.86143 7.02862 7.40001 7.47733 7.93271 8.65865 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.046738 B = 0.003271 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 598.939155 B = 8559.089093 C = 8818.477573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.596 5.596 3 C 0.705 3.295 4 O -0.630 6.630 5 N -0.724 5.724 6 C 0.140 3.860 7 C 0.434 3.566 8 O -0.623 6.623 9 N -0.558 5.558 10 C -0.337 4.337 11 H 0.087 0.913 12 C -0.011 4.011 13 N -0.917 5.917 14 Si 0.998 3.002 15 H -0.270 1.270 16 H -0.272 1.272 17 H -0.269 1.269 18 C 0.077 3.923 19 H 0.112 0.888 20 C -0.152 4.152 21 C -0.144 4.144 22 C -0.113 4.113 23 C -0.112 4.112 24 H 0.069 0.931 25 H 0.106 0.894 26 H 0.067 0.933 27 H 0.410 0.590 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.399 0.601 31 H 0.280 0.720 32 H 0.121 0.879 33 H 0.116 0.884 34 H 0.035 0.965 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.497 -20.884 -1.223 21.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.330 5.330 3 C 0.406 3.594 4 O -0.512 6.512 5 N -0.383 5.383 6 C 0.012 3.988 7 C 0.221 3.779 8 O -0.511 6.511 9 N -0.194 5.194 10 C -0.467 4.467 11 H 0.105 0.895 12 C -0.211 4.211 13 N -0.556 5.556 14 Si 0.821 3.179 15 H -0.195 1.195 16 H -0.197 1.197 17 H -0.194 1.194 18 C -0.028 4.028 19 H 0.130 0.870 20 C -0.189 4.189 21 C -0.146 4.146 22 C -0.170 4.170 23 C -0.169 4.169 24 H 0.088 0.912 25 H 0.124 0.876 26 H 0.085 0.915 27 H 0.250 0.750 28 H 0.108 0.892 29 H 0.109 0.891 30 H 0.233 0.767 31 H 0.090 0.910 32 H 0.139 0.861 33 H 0.134 0.866 34 H 0.054 0.946 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.317 -20.795 -1.220 20.959 hybrid contribution -0.165 1.203 0.016 1.214 sum -2.482 -19.592 -1.203 19.786 Atomic orbital electron populations 1.22184 0.77997 1.04537 1.03151 1.46290 1.07020 1.03055 1.76666 1.15846 0.84803 0.80812 0.77926 1.90859 1.13118 1.86960 1.60217 1.44853 1.10999 1.03317 1.79147 1.20593 0.92966 0.81309 1.03954 1.20349 0.89379 0.84530 0.83606 1.90458 1.17977 1.84646 1.58062 1.41830 1.09901 1.04265 1.63364 1.19750 0.91087 0.85393 1.50422 0.89479 1.26145 0.98476 1.00778 0.95740 1.69684 1.13832 1.22886 1.49244 0.84856 0.77650 0.76675 0.78731 1.19529 1.19672 1.19360 1.21723 0.97112 0.79544 1.04447 0.87030 1.23823 1.00994 0.96218 0.97883 1.22207 1.00007 1.01567 0.90796 1.21397 0.97832 1.00448 0.97366 1.21346 0.95191 0.98497 1.01913 0.91229 0.87602 0.91480 0.75041 0.89215 0.89117 0.76709 0.91050 0.86067 0.86606 0.94587 0.90927 0.91114 0.91171 0.90830 0.93583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.20 8.54 127.77 1.09 2.29 16 2 N -0.60 -15.51 2.88 -840.59 -2.42 -17.93 16 3 C 0.70 24.46 8.28 179.05 1.48 25.95 16 4 O -0.63 -26.09 16.05 -4.01 -0.06 -26.15 16 5 N -0.72 -25.57 5.39 -482.30 -2.60 -28.17 16 6 C 0.14 5.40 6.15 85.64 0.53 5.93 16 7 C 0.43 20.41 7.85 87.66 0.69 21.09 16 8 O -0.62 -32.39 15.24 -3.07 -0.05 -32.44 16 9 N -0.56 -28.36 5.29 -306.98 -1.62 -29.98 16 10 C -0.34 -18.65 9.68 84.04 0.81 -17.84 16 11 H 0.09 5.05 7.16 -2.91 -0.02 5.02 16 12 C -0.01 -0.56 5.50 84.92 0.47 -0.10 16 13 N -0.92 -48.97 13.05 21.66 0.28 -48.69 16 14 Si 1.00 41.77 29.55 68.60 2.03 43.80 16 15 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 16 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 17 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 18 C 0.08 1.72 5.92 44.99 0.27 1.98 16 19 H 0.11 2.94 7.67 -2.39 -0.02 2.92 16 20 C -0.15 -2.10 9.10 30.60 0.28 -1.83 16 21 C -0.14 -2.51 2.70 -52.18 -0.14 -2.65 16 22 C -0.11 -1.93 8.59 71.98 0.62 -1.31 16 23 C -0.11 -1.72 9.85 71.98 0.71 -1.01 16 24 H 0.07 1.21 6.40 -2.39 -0.02 1.20 16 25 H 0.11 1.37 5.80 -2.39 -0.01 1.35 16 26 H 0.07 1.40 6.36 -2.39 -0.02 1.38 16 27 H 0.41 14.01 5.17 -92.71 -0.48 13.53 16 28 H 0.09 3.34 8.14 -2.38 -0.02 3.32 16 29 H 0.09 3.36 8.14 -2.39 -0.02 3.34 16 30 H 0.40 19.53 7.90 -92.71 -0.73 18.80 16 31 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 32 H 0.12 1.27 8.05 -2.38 -0.02 1.25 16 33 H 0.12 1.26 5.93 -2.39 -0.01 1.25 16 34 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.07 1.01 7.92 -2.39 -0.02 1.00 16 36 H 0.07 1.03 5.64 -2.39 -0.01 1.01 16 37 H 0.07 0.88 7.90 -2.39 -0.02 0.87 16 38 H 0.07 0.92 7.92 -2.39 -0.02 0.90 16 39 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -68.22 321.65 2.23 -65.99 By element: Atomic # 1 Polarization: 41.20 SS G_CDS: -0.13 Total: 41.07 kcal Atomic # 6 Polarization: 25.70 SS G_CDS: 6.80 Total: 32.51 kcal Atomic # 7 Polarization: -118.41 SS G_CDS: -6.36 Total: -124.78 kcal Atomic # 8 Polarization: -58.48 SS G_CDS: -0.11 Total: -58.59 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Total: -68.22 2.23 -65.99 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358279132.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.889 kcal (2) G-P(sol) polarization free energy of solvation -68.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds