Wall clock time and date at job start Mon Mar 30 2020 01:45:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.66813 * 2 1 4 4 C 1.50079 * 109.40760 * 120.15030 * 2 1 3 5 5 O 1.21278 * 118.50364 * 287.25963 * 4 2 1 6 6 N 1.33383 * 123.00676 * 107.43240 * 4 2 1 7 7 C 1.45643 * 124.59168 * 4.17010 * 6 4 2 8 8 C 1.52994 * 110.77166 * 338.07427 * 7 6 4 9 9 N 1.47047 * 109.56649 * 239.69791 * 2 1 3 10 10 C 1.34777 * 121.35120 * 102.94271 * 9 2 1 11 11 O 1.21278 * 120.00239 * 359.71352 * 10 9 2 12 12 C 1.50699 * 119.99904 * 179.71394 * 10 9 2 13 13 H 1.08995 * 109.47436 * 319.99778 * 12 10 9 14 14 N 1.46903 * 109.47262 * 199.99955 * 12 10 9 15 15 C 1.53005 * 109.47129 * 80.00267 * 12 10 9 16 16 C 1.53004 * 109.46983 * 184.99967 * 15 12 10 17 17 C 1.50695 * 109.46637 * 179.97438 * 16 15 12 18 18 H 1.08004 * 120.00546 * 0.27598 * 17 16 15 19 19 C 1.37885 * 119.99721 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00035 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99853 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46986 * 90.00256 * 21 19 17 23 23 H 1.48496 * 109.47029 * 210.00273 * 21 19 17 24 24 H 1.48499 * 109.47352 * 330.00102 * 21 19 17 25 25 H 1.08996 * 109.47407 * 180.29680 * 1 2 3 26 26 H 1.09002 * 109.46617 * 300.30264 * 1 2 3 27 27 H 1.09000 * 109.46889 * 60.29656 * 1 2 3 28 28 H 0.96998 * 117.70160 * 184.13654 * 6 4 2 29 29 H 1.08995 * 109.21865 * 217.74348 * 7 6 4 30 30 H 1.09004 * 109.22291 * 98.40427 * 7 6 4 31 31 H 1.09007 * 109.71615 * 287.04964 * 8 7 6 32 32 H 1.09005 * 109.75539 * 166.42216 * 8 7 6 33 33 H 1.00904 * 110.99804 * 300.00588 * 14 12 10 34 34 H 1.00906 * 110.99874 * 63.95262 * 14 12 10 35 35 H 1.09000 * 109.46931 * 64.99992 * 15 12 10 36 36 H 1.08997 * 109.46785 * 304.99472 * 15 12 10 37 37 H 1.08992 * 109.47421 * 59.99948 * 16 15 12 38 38 H 1.08997 * 109.46955 * 299.99401 * 16 15 12 39 39 H 0.97000 * 119.99706 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8969 1.0264 0.0000 4 6 2.0287 -0.7110 1.2240 5 8 1.9228 -0.1578 2.2981 6 7 2.5862 -1.9221 1.1843 7 6 2.8611 -2.6661 -0.0372 8 6 1.9783 -2.1710 -1.1844 9 7 2.0225 -0.6991 -1.1963 10 6 2.5003 -0.0204 -2.2582 11 8 2.5253 1.1920 -2.2417 12 6 3.0033 -0.7681 -3.4660 13 1 3.5601 -1.6477 -3.1430 14 7 3.8832 0.1069 -4.2522 15 6 1.8159 -1.2039 -4.3271 16 6 2.3165 -2.0687 -5.4858 17 6 1.1469 -2.4983 -6.3335 18 1 0.1472 -2.1822 -6.0745 19 6 1.3539 -3.2899 -7.4433 20 7 2.5718 -3.6704 -7.7618 21 14 -0.0959 -3.8232 -8.4937 22 1 -0.3296 -2.8181 -9.5616 23 1 0.1980 -5.1416 -9.1104 24 1 -1.3088 -3.9336 -7.6439 25 1 -0.3634 -1.0276 0.0053 26 1 -0.3632 0.5185 0.8873 27 1 -0.3633 0.5092 -0.8926 28 1 2.8258 -2.3361 2.0281 29 1 2.6650 -3.7243 0.1355 30 1 3.9087 -2.5358 -0.3087 31 1 0.9527 -2.5070 -1.0306 32 1 2.3538 -2.5579 -2.1318 33 1 3.3899 0.9302 -4.5636 34 1 4.7079 0.3565 -3.7271 35 1 1.3114 -0.3225 -4.7230 36 1 1.1182 -1.7796 -3.7191 37 1 2.8210 -2.9499 -5.0900 38 1 3.0142 -1.4929 -6.0938 39 1 2.7173 -4.2276 -8.5423 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424116296.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:45:12 Heat of formation + Delta-G solvation = -102.161247 kcal Electronic energy + Delta-G solvation = -21350.750024 eV Core-core repulsion = 18098.764478 eV Total energy + Delta-G solvation = -3251.985546 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.09707 -40.51731 -37.77759 -36.91077 -35.55530 -34.80518 -32.67919 -31.89774 -29.86959 -28.17366 -26.26509 -25.02992 -24.65642 -22.38994 -20.99674 -19.60099 -19.02654 -18.50723 -18.16618 -17.66618 -16.90837 -16.80122 -16.55828 -16.23548 -15.90131 -15.31854 -15.24700 -14.87233 -14.30378 -14.20454 -13.97510 -13.60905 -13.41622 -13.35500 -13.22302 -12.78941 -12.76128 -12.64376 -12.47895 -12.18939 -11.72390 -11.61813 -11.39669 -11.18832 -10.97016 -10.44441 -10.25058 -9.87395 -9.63802 -8.09861 -6.18942 1.32742 1.38303 1.45251 1.46755 1.56214 1.63812 2.14329 2.47933 3.24110 3.27320 3.41289 3.65244 3.75192 3.92688 3.95453 4.04836 4.17051 4.28892 4.35814 4.56443 4.65920 4.70821 4.80441 4.85827 4.97056 5.06033 5.16210 5.28537 5.62752 5.69726 5.90042 6.00218 6.03807 6.10531 6.21535 6.35056 6.49602 6.90197 7.00051 7.00980 7.49220 9.01038 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.026105 B = 0.004420 C = 0.004257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.343025 B = 6333.202752 C = 6575.530360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.125 3.875 3 H 0.104 0.896 4 C 0.521 3.479 5 O -0.587 6.587 6 N -0.703 5.703 7 C 0.094 3.906 8 C 0.074 3.926 9 N -0.606 5.606 10 C 0.494 3.506 11 O -0.578 6.578 12 C 0.089 3.911 13 H 0.119 0.881 14 N -0.818 5.818 15 C -0.083 4.083 16 C 0.040 3.960 17 C -0.540 4.540 18 H 0.055 0.945 19 C 0.006 3.994 20 N -0.928 5.928 21 Si 0.953 3.047 22 H -0.280 1.280 23 H -0.284 1.284 24 H -0.263 1.263 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.067 0.933 28 H 0.410 0.590 29 H 0.134 0.866 30 H 0.081 0.919 31 H 0.102 0.898 32 H 0.120 0.880 33 H 0.345 0.655 34 H 0.346 0.654 35 H 0.039 0.961 36 H 0.074 0.926 37 H 0.002 0.998 38 H 0.003 0.997 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.562 -0.567 16.480 16.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.018 3.982 3 H 0.121 0.879 4 C 0.307 3.693 5 O -0.468 6.468 6 N -0.354 5.354 7 C -0.030 4.030 8 C -0.048 4.048 9 N -0.341 5.341 10 C 0.282 3.718 11 O -0.457 6.457 12 C -0.027 4.027 13 H 0.137 0.863 14 N -0.347 5.347 15 C -0.121 4.121 16 C 0.003 3.997 17 C -0.578 4.578 18 H 0.073 0.927 19 C -0.192 4.192 20 N -0.569 5.569 21 Si 0.779 3.221 22 H -0.206 1.206 23 H -0.209 1.209 24 H -0.187 1.187 25 H 0.097 0.903 26 H 0.098 0.902 27 H 0.086 0.914 28 H 0.247 0.753 29 H 0.151 0.849 30 H 0.099 0.901 31 H 0.120 0.880 32 H 0.138 0.862 33 H 0.158 0.842 34 H 0.160 0.840 35 H 0.058 0.942 36 H 0.092 0.908 37 H 0.021 0.979 38 H 0.022 0.978 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.484 -0.276 16.157 16.166 hybrid contribution -0.554 0.448 0.212 0.743 sum -1.038 0.172 16.368 16.402 Atomic orbital electron populations 1.21952 0.90785 1.04046 1.03588 1.21173 0.97467 0.97714 0.81862 0.87856 1.20118 0.77024 0.82056 0.90100 1.90762 1.58784 1.65952 1.31282 1.45335 1.60960 1.17208 1.11848 1.22044 1.00237 0.98083 0.82654 1.22580 1.03040 0.77650 1.01503 1.48488 1.62235 1.08175 1.15203 1.22636 0.75974 0.88227 0.84967 1.90653 1.57549 1.15631 1.81917 1.21725 0.96019 0.96569 0.88380 0.86302 1.59027 1.09701 1.23873 1.42077 1.21440 0.94662 0.99158 0.96820 1.18821 0.94964 0.93497 0.92404 1.21722 0.94632 1.30649 1.10820 0.92671 1.25808 0.97997 0.96487 0.98925 1.70089 1.21966 1.37323 1.27491 0.85632 0.80043 0.77462 0.78988 1.20627 1.20916 1.18708 0.90292 0.90225 0.91379 0.75286 0.84863 0.90078 0.88021 0.86152 0.84161 0.84050 0.94215 0.90770 0.97949 0.97828 0.93025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.94 9.37 71.98 0.67 -2.26 16 2 C 0.12 2.94 3.05 43.95 0.13 3.08 16 3 H 0.10 2.95 7.23 -2.39 -0.02 2.93 16 4 C 0.52 12.00 7.07 87.68 0.62 12.62 16 5 O -0.59 -17.85 17.80 -3.02 -0.05 -17.90 16 6 N -0.70 -10.59 5.42 -467.51 -2.53 -13.12 16 7 C 0.09 0.96 7.34 86.54 0.63 1.59 16 8 C 0.07 1.12 5.69 86.23 0.49 1.61 16 9 N -0.61 -13.58 2.63 -799.84 -2.10 -15.68 16 10 C 0.49 14.19 6.96 87.66 0.61 14.80 16 11 O -0.58 -20.46 15.81 -3.02 -0.05 -20.51 16 12 C 0.09 2.62 2.30 44.17 0.10 2.72 16 13 H 0.12 3.04 6.74 -2.39 -0.02 3.02 16 14 N -0.82 -25.71 8.44 -171.79 -1.45 -27.16 16 15 C -0.08 -2.98 4.50 30.60 0.14 -2.85 16 16 C 0.04 1.93 4.86 29.85 0.15 2.07 16 17 C -0.54 -28.86 9.11 25.60 0.23 -28.62 16 18 H 0.06 2.85 7.74 -2.91 -0.02 2.82 16 19 C 0.01 0.32 5.46 84.66 0.46 0.78 16 20 N -0.93 -54.20 13.29 21.45 0.28 -53.91 16 21 Si 0.95 42.62 29.54 68.60 2.03 44.65 16 22 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 23 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 24 H -0.26 -11.14 7.11 99.48 0.71 -10.43 16 25 H 0.08 1.33 7.52 -2.39 -0.02 1.31 16 26 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 28 H 0.41 4.93 8.80 -92.71 -0.82 4.11 16 29 H 0.13 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.10 1.28 7.53 -2.38 -0.02 1.27 16 32 H 0.12 1.90 5.08 -2.38 -0.01 1.89 16 33 H 0.34 11.32 8.58 -89.69 -0.77 10.55 16 34 H 0.35 9.34 9.06 -89.69 -0.81 8.52 16 35 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.07 2.38 7.10 -2.39 -0.02 2.37 16 37 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 38 H 0.00 0.18 7.75 -2.39 -0.02 0.16 16 39 H 0.26 14.43 8.31 -92.71 -0.77 13.66 16 Total: -1.00 -72.55 320.24 -0.94 -73.49 By element: Atomic # 1 Polarization: 25.90 SS G_CDS: -1.30 Total: 24.60 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: 4.24 Total: 5.54 kcal Atomic # 7 Polarization: -104.07 SS G_CDS: -5.80 Total: -109.87 kcal Atomic # 8 Polarization: -38.31 SS G_CDS: -0.10 Total: -38.41 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -72.55 -0.94 -73.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424116296.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.671 kcal (2) G-P(sol) polarization free energy of solvation -72.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds