Wall clock time and date at job start Mon Mar 30 2020 01:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46813 * 2 1 4 4 C 1.52992 * 109.47330 * 240.00095 * 2 1 3 5 5 C 1.50697 * 109.47077 * 174.99754 * 4 2 1 6 6 N 1.34776 * 120.00086 * 179.97438 * 5 4 2 7 7 O 1.21279 * 120.00307 * 0.02562 * 5 4 2 8 8 N 1.46503 * 109.46883 * 119.99638 * 2 1 3 9 9 C 1.34767 * 120.00515 * 275.00209 * 8 2 1 10 10 O 1.21593 * 119.99913 * 359.97438 * 9 8 2 11 11 N 1.34780 * 120.00423 * 180.02562 * 9 8 2 12 12 C 1.46502 * 120.00300 * 180.02562 * 11 9 8 13 13 C 1.52993 * 109.47061 * 178.28783 * 12 11 9 14 14 C 1.50696 * 115.55374 * 65.13908 * 13 12 11 15 15 H 1.08007 * 119.99922 * 265.40751 * 14 13 12 16 16 C 1.37871 * 119.99987 * 85.40092 * 14 13 12 17 17 N 1.31515 * 120.00199 * 353.56249 * 16 14 13 18 18 Si 1.86805 * 120.00026 * 173.55648 * 16 14 13 19 19 H 1.48499 * 109.47021 * 90.00306 * 18 16 14 20 20 H 1.48504 * 109.46951 * 210.00490 * 18 16 14 21 21 H 1.48498 * 109.47303 * 330.00190 * 18 16 14 22 22 C 1.53006 * 117.49756 * 279.47179 * 13 12 11 23 23 C 1.52997 * 117.49726 * 210.81179 * 13 12 11 24 24 H 1.09003 * 109.47188 * 60.00030 * 1 2 3 25 25 H 1.09002 * 109.46813 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47529 * 300.00083 * 1 2 3 27 27 H 1.09002 * 109.47080 * 54.99978 * 4 2 1 28 28 H 1.08999 * 109.47337 * 295.00192 * 4 2 1 29 29 H 0.97001 * 120.00773 * 180.02562 * 6 5 4 30 30 H 0.97010 * 119.99931 * 359.73177 * 6 5 4 31 31 H 0.97004 * 119.99155 * 95.00846 * 8 2 1 32 32 H 0.97001 * 119.99502 * 359.97438 * 11 9 8 33 33 H 1.09000 * 109.46331 * 298.28697 * 12 11 9 34 34 H 1.09003 * 109.46701 * 58.28564 * 12 11 9 35 35 H 0.96999 * 119.99793 * 185.06776 * 17 16 14 36 36 H 1.08997 * 117.49896 * 359.97438 * 22 13 12 37 37 H 1.08997 * 117.49770 * 145.02282 * 22 13 12 38 38 H 1.08999 * 117.49790 * 214.97752 * 23 13 12 39 39 H 1.08995 * 117.50181 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5419 -0.6148 -1.3126 6 7 4.2150 -1.1803 -2.3341 7 8 4.1450 -0.0210 -0.4440 8 7 2.0183 -0.6906 1.1963 9 6 2.1469 -0.0183 2.3572 10 8 1.8582 1.1616 2.4117 11 7 2.5967 -0.6535 3.4576 12 6 2.7360 0.0772 4.7197 13 6 3.2204 -0.8787 5.8116 14 6 4.6025 -1.4455 5.6131 15 1 4.7288 -2.4066 5.1367 16 6 5.7058 -0.7371 6.0395 17 7 5.5635 0.4853 6.5032 18 14 7.4028 -1.5138 5.9587 19 1 8.0245 -1.2094 4.6449 20 1 8.2509 -0.9643 7.0469 21 1 7.2821 -2.9850 6.1202 22 6 2.1767 -1.7785 6.4766 23 6 2.7718 -0.5971 7.2469 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 1.6054 -0.2617 -2.1369 28 1 1.7517 -1.7714 -1.2056 29 1 5.1817 -1.1122 -2.3749 30 1 3.7330 -1.6592 -3.0265 31 1 2.2490 -1.6317 1.1526 32 1 2.8273 -1.5946 3.4140 33 1 3.4595 0.8829 4.5950 34 1 1.7711 0.4962 5.0053 35 1 6.3457 1.0105 6.7341 36 1 1.1450 -1.6891 6.1365 37 1 2.4900 -2.7802 6.7709 38 1 3.4762 -0.8221 8.0477 39 1 2.1320 0.2695 7.4134 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431199504.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:37 Heat of formation + Delta-G solvation = -54.943758 kcal Electronic energy + Delta-G solvation = -20955.437968 eV Core-core repulsion = 17705.499926 eV Total energy + Delta-G solvation = -3249.938042 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.93181 -38.89859 -36.76106 -35.35700 -33.74708 -33.08271 -31.88960 -30.89443 -28.06322 -26.05740 -24.97108 -22.10986 -21.12402 -20.40556 -20.06367 -19.27388 -17.84083 -17.29840 -16.72600 -16.17821 -15.85663 -14.85190 -14.74033 -14.48057 -14.12950 -13.93299 -13.76897 -13.20193 -12.99084 -12.51748 -12.37605 -12.22228 -11.87548 -11.59904 -11.46583 -10.96273 -10.92905 -10.83702 -10.45908 -10.19435 -9.97023 -9.78196 -9.58281 -9.36738 -8.87058 -8.65084 -8.40655 -8.15761 -7.80637 -5.98940 -4.06927 2.60749 3.32528 3.36870 3.38972 3.39455 3.40724 4.04111 4.42969 4.57401 4.75919 4.90665 5.10407 5.27587 5.29442 5.43377 5.46641 5.52779 5.71708 6.10269 6.15350 6.28607 6.43255 6.56877 6.66032 6.70586 6.77177 6.97850 7.00015 7.16670 7.19056 7.47177 7.54308 7.59890 7.75987 7.90142 8.21881 8.43281 8.85637 8.93548 9.42928 9.59301 11.09084 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.017821 B = 0.005392 C = 0.004453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.791801 B = 5191.237175 C = 6286.939643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.176 3.824 3 H 0.094 0.906 4 C -0.151 4.151 5 C 0.505 3.495 6 N -0.863 5.863 7 O -0.514 6.514 8 N -0.740 5.740 9 C 0.706 3.294 10 O -0.605 6.605 11 N -0.722 5.722 12 C 0.183 3.817 13 C 0.029 3.971 14 C -0.498 4.498 15 H 0.058 0.942 16 C 0.074 3.926 17 N -0.874 5.874 18 Si 0.889 3.111 19 H -0.281 1.281 20 H -0.286 1.286 21 H -0.274 1.274 22 C -0.211 4.211 23 C -0.148 4.148 24 H 0.061 0.939 25 H 0.054 0.946 26 H 0.067 0.933 27 H 0.106 0.894 28 H 0.097 0.903 29 H 0.400 0.600 30 H 0.398 0.602 31 H 0.388 0.612 32 H 0.393 0.607 33 H 0.068 0.932 34 H 0.033 0.967 35 H 0.261 0.739 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.854 -6.310 -17.397 20.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.070 3.930 3 H 0.112 0.888 4 C -0.191 4.191 5 C 0.289 3.711 6 N -0.428 5.428 7 O -0.387 6.387 8 N -0.396 5.396 9 C 0.406 3.594 10 O -0.484 6.484 11 N -0.374 5.374 12 C 0.060 3.940 13 C 0.028 3.972 14 C -0.536 4.536 15 H 0.077 0.923 16 C -0.130 4.130 17 N -0.510 5.510 18 Si 0.716 3.284 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.248 4.248 23 C -0.186 4.186 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.086 0.914 27 H 0.124 0.876 28 H 0.116 0.884 29 H 0.230 0.770 30 H 0.225 0.775 31 H 0.221 0.779 32 H 0.226 0.774 33 H 0.087 0.913 34 H 0.051 0.949 35 H 0.071 0.929 36 H 0.083 0.917 37 H 0.095 0.905 38 H 0.101 0.899 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.790 -4.605 -16.481 18.802 hybrid contribution 1.462 -1.497 -0.543 2.162 sum -6.328 -6.102 -17.024 19.159 Atomic orbital electron populations 1.22221 0.95357 1.01866 1.02703 1.20377 0.92948 0.97828 0.81868 0.88829 1.22059 0.92534 1.03681 1.00866 1.20719 0.90558 0.78500 0.81319 1.43941 1.11557 1.59436 1.27887 1.90908 1.70058 1.40423 1.37340 1.44942 1.72841 1.12921 1.08883 1.15925 0.78345 0.84937 0.80240 1.90843 1.58340 1.14451 1.84787 1.45083 1.69028 1.13898 1.09353 1.20805 0.97854 0.94428 0.80941 1.19049 0.92938 0.95357 0.89869 1.20307 0.88653 1.04626 1.40003 0.92348 1.24971 0.98848 0.94892 0.94269 1.69975 1.29732 1.08540 1.42772 0.86648 0.84455 0.79544 0.77705 1.20685 1.21189 1.19895 1.23009 0.97098 0.95652 1.09036 1.22482 1.01947 0.96750 0.97431 0.92039 0.92682 0.91380 0.87589 0.88448 0.76973 0.77476 0.77924 0.77355 0.91328 0.94889 0.92897 0.91684 0.90484 0.89880 0.91671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 9.48 37.16 0.35 -1.39 16 2 C 0.18 2.27 2.13 -67.93 -0.15 2.13 16 3 H 0.09 1.55 7.39 -51.93 -0.38 1.16 16 4 C -0.15 -1.25 5.24 -27.89 -0.15 -1.39 16 5 C 0.51 5.77 7.96 -10.99 -0.09 5.68 16 6 N -0.86 -6.11 8.87 31.22 0.28 -5.84 16 7 O -0.51 -9.22 16.19 5.56 0.09 -9.13 16 8 N -0.74 -11.49 4.22 -58.68 -0.25 -11.74 16 9 C 0.71 14.79 8.53 -86.92 -0.74 14.04 16 10 O -0.60 -15.01 16.01 5.28 0.08 -14.92 16 11 N -0.72 -15.39 5.48 -65.23 -0.36 -15.75 16 12 C 0.18 4.49 5.50 -4.04 -0.02 4.47 16 13 C 0.03 0.71 1.38 -155.66 -0.21 0.49 16 14 C -0.50 -13.40 8.63 -34.44 -0.30 -13.70 16 15 H 0.06 1.54 7.82 -52.48 -0.41 1.13 16 16 C 0.07 2.06 5.39 -17.82 -0.10 1.96 16 17 N -0.87 -25.36 12.91 55.43 0.72 -24.65 16 18 Si 0.89 21.48 29.55 -169.99 -5.02 16.46 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 22 C -0.21 -4.54 9.96 -26.69 -0.27 -4.80 16 23 C -0.15 -3.51 9.42 -26.69 -0.25 -3.76 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.11 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.40 2.86 8.93 -40.82 -0.36 2.50 16 30 H 0.40 1.31 8.83 -40.82 -0.36 0.95 16 31 H 0.39 5.05 8.62 -40.82 -0.35 4.70 16 32 H 0.39 7.66 8.38 -40.82 -0.34 7.32 16 33 H 0.07 1.95 8.14 -51.93 -0.42 1.52 16 34 H 0.03 0.79 8.09 -51.93 -0.42 0.37 16 35 H 0.26 7.29 8.32 -40.82 -0.34 6.95 16 36 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 37 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 38 H 0.08 2.08 8.14 -51.93 -0.42 1.65 16 39 H 0.06 1.47 8.14 -51.93 -0.42 1.05 16 LS Contribution 335.97 15.07 5.06 5.06 Total: -1.00 -36.16 335.97 -7.31 -43.46 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: -6.00 Total: 13.31 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: -1.92 Total: 3.73 kcal Atomic # 7 Polarization: -58.36 SS G_CDS: 0.39 Total: -57.97 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: 0.17 Total: -24.05 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -36.16 -7.31 -43.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431199504.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.480 kcal (2) G-P(sol) polarization free energy of solvation -36.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds