Wall clock time and date at job start Mon Mar 30 2020 01:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47280 * 2 1 4 4 H 1.09007 * 109.46662 * 55.00523 * 3 2 1 5 5 C 1.50698 * 109.47106 * 174.99881 * 3 2 1 6 6 H 1.08001 * 119.99936 * 120.00745 * 5 3 2 7 7 C 1.37871 * 120.00140 * 300.00470 * 5 3 2 8 8 N 1.31518 * 120.00553 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 120.00151 * 179.97438 * 7 5 3 10 10 H 1.48509 * 109.46889 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47578 * 119.99847 * 9 7 5 12 12 H 1.48502 * 109.47395 * 240.00439 * 9 7 5 13 13 N 1.46497 * 109.47555 * 295.00341 * 3 2 1 14 14 C 1.34780 * 120.00103 * 84.99608 * 13 3 2 15 15 O 1.21284 * 119.99863 * 0.02562 * 14 13 3 16 16 C 1.50693 * 119.99989 * 180.02562 * 14 13 3 17 17 N 1.46504 * 109.47107 * 180.02562 * 16 14 13 18 18 C 1.46380 * 119.33081 * 89.99766 * 17 16 14 19 19 C 1.53242 * 109.15205 * 150.92005 * 18 17 16 20 20 C 1.53242 * 108.56481 * 55.48200 * 19 18 17 21 21 N 1.46382 * 109.15108 * 304.51860 * 20 19 18 22 22 C 1.34136 * 121.34052 * 29.31730 * 21 20 19 23 23 O 1.21588 * 118.69512 * 179.14852 * 22 21 20 24 24 H 1.08999 * 109.47010 * 299.99676 * 1 2 3 25 25 H 1.09005 * 109.46988 * 59.99620 * 1 2 3 26 26 H 1.08995 * 109.46935 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46931 * 240.00751 * 2 1 3 28 28 H 1.08996 * 109.47194 * 120.00475 * 2 1 3 29 29 H 0.96996 * 120.00457 * 180.02562 * 8 7 5 30 30 H 0.96993 * 120.00079 * 265.00151 * 13 3 2 31 31 H 1.09001 * 109.47302 * 60.00436 * 16 14 13 32 32 H 1.08994 * 109.47247 * 300.00058 * 16 14 13 33 33 H 1.09002 * 109.52172 * 31.02212 * 18 17 16 34 34 H 1.08994 * 109.53014 * 270.82370 * 18 17 16 35 35 H 1.09001 * 109.62162 * 295.75706 * 19 18 17 36 36 H 1.08998 * 109.77253 * 175.29619 * 19 18 17 37 37 H 1.08997 * 109.52104 * 184.61558 * 20 19 18 38 38 H 1.09000 * 109.57241 * 64.45514 * 20 19 18 39 39 H 0.97001 * 119.32574 * 209.03079 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5420 1.4442 0.1239 6 1 4.1473 1.8889 -0.6522 7 6 4.1433 0.8783 1.2279 8 7 3.4063 0.3363 2.1728 9 14 6.0051 0.8798 1.3811 10 1 6.5989 1.5440 0.1930 11 1 6.4002 1.6154 2.6091 12 1 6.4963 -0.5193 1.4624 13 7 1.6525 2.0976 -1.2517 14 6 0.4352 2.6645 -1.3668 15 8 -0.3392 2.6327 -0.4339 16 6 0.0363 3.3379 -2.6546 17 7 -1.3222 3.8712 -2.5264 18 6 -1.5131 5.2361 -2.0332 19 6 -2.7984 5.8132 -2.6359 20 6 -3.9592 4.8690 -2.3051 21 7 -3.6354 3.5240 -2.7835 22 6 -2.3661 3.0971 -2.8590 23 8 -2.1530 1.9652 -3.2486 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5137 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 3.8294 -0.0615 2.9497 30 1 2.2719 2.1232 -1.9977 31 1 0.0673 2.6132 -3.4683 32 1 0.7277 4.1531 -2.8676 33 1 -0.6637 5.8522 -2.3285 34 1 -1.5944 5.2228 -0.9464 35 1 -2.6906 5.8959 -3.7174 36 1 -2.9950 6.7977 -2.2114 37 1 -4.8665 5.2216 -2.7954 38 1 -4.1139 4.8446 -1.2264 39 1 -4.3537 2.9280 -3.0474 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000546568543.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:00 Heat of formation + Delta-G solvation = -64.555504 kcal Electronic energy + Delta-G solvation = -21534.324578 eV Core-core repulsion = 18283.969739 eV Total energy + Delta-G solvation = -3250.354838 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.61655 -38.66649 -36.35308 -35.27257 -34.40080 -32.31842 -31.18236 -30.76586 -28.17317 -26.61183 -25.37880 -23.22002 -22.71664 -20.52289 -19.28359 -18.87326 -17.50915 -17.21237 -17.09749 -16.03951 -15.40087 -15.20944 -14.73777 -14.51289 -14.20978 -13.93713 -13.78612 -13.68270 -12.84426 -12.60353 -12.54006 -12.00894 -11.58454 -11.51990 -11.49117 -11.20831 -11.12572 -10.91774 -10.77284 -10.26069 -10.09731 -9.94818 -9.53057 -9.31380 -9.07435 -8.96403 -8.46660 -8.27314 -7.71966 -6.07983 -4.17402 2.71018 3.25719 3.33339 3.34528 3.36225 3.50944 3.77920 4.24679 4.45522 4.49479 4.65727 4.88535 5.09782 5.22919 5.26738 5.40004 5.41665 5.52437 5.63084 5.67306 5.91849 6.30897 6.52073 6.60749 6.62702 6.80297 7.10499 7.18639 7.30923 7.47856 7.56011 7.68914 7.81586 7.90469 7.97019 8.25351 8.70027 8.76923 8.84422 9.23875 9.50399 10.97244 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.035453 B = 0.004503 C = 0.004283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.593369 B = 6216.830091 C = 6536.451807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.126 4.126 3 C 0.272 3.728 4 H 0.047 0.953 5 C -0.532 4.532 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.709 5.709 14 C 0.485 3.515 15 O -0.541 6.541 16 C 0.109 3.891 17 N -0.602 5.602 18 C 0.113 3.887 19 C -0.150 4.150 20 C 0.111 3.889 21 N -0.740 5.740 22 C 0.716 3.284 23 O -0.594 6.594 24 H 0.045 0.955 25 H 0.043 0.957 26 H 0.020 0.980 27 H 0.030 0.970 28 H 0.097 0.903 29 H 0.263 0.737 30 H 0.387 0.613 31 H 0.108 0.892 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.075 0.925 36 H 0.095 0.905 37 H 0.080 0.920 38 H 0.064 0.936 39 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.638 11.756 -10.317 18.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.165 4.165 3 C 0.170 3.830 4 H 0.065 0.935 5 C -0.571 4.571 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 N -0.358 5.358 14 C 0.269 3.731 15 O -0.419 6.419 16 C -0.018 4.018 17 N -0.338 5.338 18 C -0.010 4.010 19 C -0.189 4.189 20 C -0.014 4.014 21 N -0.398 5.398 22 C 0.417 3.583 23 O -0.473 6.473 24 H 0.064 0.936 25 H 0.062 0.938 26 H 0.039 0.961 27 H 0.049 0.951 28 H 0.115 0.885 29 H 0.073 0.927 30 H 0.219 0.781 31 H 0.126 0.874 32 H 0.118 0.882 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.113 0.887 37 H 0.098 0.902 38 H 0.083 0.917 39 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -10.905 11.165 -9.593 18.319 hybrid contribution 0.979 -0.163 -0.154 1.004 sum -9.927 11.002 -9.747 17.736 Atomic orbital electron populations 1.21819 0.98206 0.97981 1.01325 1.21922 0.92696 0.99821 1.02097 1.18746 0.94020 0.89190 0.81037 0.93529 1.21287 0.90799 1.38803 1.06178 0.92044 1.24894 0.98524 0.94865 0.95450 1.69917 1.34979 1.37732 1.09362 0.86417 0.84999 0.77762 0.78035 1.19751 1.20954 1.20909 1.46454 1.14645 1.56225 1.18492 1.20835 0.82822 0.79883 0.89596 1.90652 1.51171 1.59664 1.40397 1.21296 0.82389 1.00105 0.98054 1.46245 1.04813 1.13875 1.68877 1.21581 0.97884 0.82088 0.99477 1.22187 0.94875 0.99524 1.02293 1.21485 0.97917 0.82266 0.99752 1.44865 1.06321 1.16543 1.72086 1.15322 0.80837 0.83765 0.78342 1.90956 1.83718 1.18212 1.54391 0.93553 0.93788 0.96073 0.95083 0.88487 0.92685 0.78063 0.87359 0.88204 0.90055 0.91125 0.90608 0.88663 0.90205 0.91740 0.75082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.35 8.52 37.16 0.32 -3.03 16 2 C -0.13 -3.25 5.45 -26.73 -0.15 -3.40 16 3 C 0.27 7.01 2.24 -69.09 -0.15 6.85 16 4 H 0.05 1.39 7.58 -51.93 -0.39 0.99 16 5 C -0.53 -14.18 8.73 -34.44 -0.30 -14.48 16 6 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -25.13 11.29 55.43 0.63 -24.50 16 9 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 10 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 N -0.71 -14.98 5.02 -54.93 -0.28 -15.26 16 14 C 0.49 9.87 6.46 -10.99 -0.07 9.80 16 15 O -0.54 -13.02 13.57 5.55 0.08 -12.95 16 16 C 0.11 1.66 5.83 -5.19 -0.03 1.63 16 17 N -0.60 -8.90 2.30 -181.16 -0.42 -9.32 16 18 C 0.11 1.22 6.55 -3.98 -0.03 1.19 16 19 C -0.15 -1.12 6.20 -26.48 -0.16 -1.28 16 20 C 0.11 0.91 7.21 -3.98 -0.03 0.88 16 21 N -0.74 -8.98 5.58 -65.53 -0.37 -9.34 16 22 C 0.72 11.85 8.18 -88.05 -0.72 11.13 16 23 O -0.59 -12.34 16.50 5.29 0.09 -12.25 16 24 H 0.05 1.20 7.85 -51.93 -0.41 0.79 16 25 H 0.04 1.10 5.65 -51.93 -0.29 0.81 16 26 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.10 2.72 5.95 -51.93 -0.31 2.42 16 29 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 30 H 0.39 7.02 8.54 -40.82 -0.35 6.68 16 31 H 0.11 1.67 7.32 -51.93 -0.38 1.29 16 32 H 0.10 1.13 7.86 -51.93 -0.41 0.73 16 33 H 0.08 0.71 7.86 -51.93 -0.41 0.30 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.41 4.42 8.88 -40.82 -0.36 4.06 16 LS Contribution 316.31 15.07 4.77 4.77 Total: -1.00 -35.25 316.31 -7.76 -43.01 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -5.81 Total: 9.15 kcal Atomic # 6 Polarization: 12.40 SS G_CDS: -1.42 Total: 10.98 kcal Atomic # 7 Polarization: -57.99 SS G_CDS: -0.43 Total: -58.42 kcal Atomic # 8 Polarization: -25.36 SS G_CDS: 0.16 Total: -25.20 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -35.25 -7.76 -43.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000546568543.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.550 kcal (2) G-P(sol) polarization free energy of solvation -35.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds