Wall clock time and date at job start Mon Mar 30 2020 01:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47280 * 2 1 4 4 H 1.09007 * 109.46662 * 55.00523 * 3 2 1 5 5 C 1.50698 * 109.47106 * 174.99881 * 3 2 1 6 6 H 1.08001 * 119.99936 * 120.00745 * 5 3 2 7 7 C 1.37871 * 120.00140 * 300.00470 * 5 3 2 8 8 N 1.31518 * 120.00553 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 120.00151 * 179.97438 * 7 5 3 10 10 H 1.48509 * 109.46889 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.47578 * 119.99847 * 9 7 5 12 12 H 1.48502 * 109.47395 * 240.00439 * 9 7 5 13 13 N 1.46497 * 109.47555 * 295.00341 * 3 2 1 14 14 C 1.34780 * 120.00103 * 84.99608 * 13 3 2 15 15 O 1.21284 * 119.99863 * 0.02562 * 14 13 3 16 16 C 1.50693 * 119.99989 * 180.02562 * 14 13 3 17 17 N 1.46504 * 109.47107 * 180.02562 * 16 14 13 18 18 C 1.46380 * 119.33081 * 89.99766 * 17 16 14 19 19 C 1.53242 * 109.15205 * 150.92005 * 18 17 16 20 20 C 1.53242 * 108.56481 * 55.48200 * 19 18 17 21 21 N 1.46382 * 109.15108 * 304.51860 * 20 19 18 22 22 C 1.34136 * 121.34052 * 29.31730 * 21 20 19 23 23 O 1.21588 * 118.69512 * 179.14852 * 22 21 20 24 24 H 1.08999 * 109.47010 * 299.99676 * 1 2 3 25 25 H 1.09005 * 109.46988 * 59.99620 * 1 2 3 26 26 H 1.08995 * 109.46935 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46931 * 240.00751 * 2 1 3 28 28 H 1.08996 * 109.47194 * 120.00475 * 2 1 3 29 29 H 0.96996 * 120.00457 * 180.02562 * 8 7 5 30 30 H 0.96993 * 120.00079 * 265.00151 * 13 3 2 31 31 H 1.09001 * 109.47302 * 60.00436 * 16 14 13 32 32 H 1.08994 * 109.47247 * 300.00058 * 16 14 13 33 33 H 1.09002 * 109.52172 * 31.02212 * 18 17 16 34 34 H 1.08994 * 109.53014 * 270.82370 * 18 17 16 35 35 H 1.09001 * 109.62162 * 295.75706 * 19 18 17 36 36 H 1.08998 * 109.77253 * 175.29619 * 19 18 17 37 37 H 1.08997 * 109.52104 * 184.61558 * 20 19 18 38 38 H 1.09000 * 109.57241 * 64.45514 * 20 19 18 39 39 H 0.97001 * 119.32574 * 209.03079 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5420 1.4442 0.1239 6 1 4.1473 1.8889 -0.6522 7 6 4.1433 0.8783 1.2279 8 7 3.4063 0.3363 2.1728 9 14 6.0051 0.8798 1.3811 10 1 6.5989 1.5440 0.1930 11 1 6.4002 1.6154 2.6091 12 1 6.4963 -0.5193 1.4624 13 7 1.6525 2.0976 -1.2517 14 6 0.4352 2.6645 -1.3668 15 8 -0.3392 2.6327 -0.4339 16 6 0.0363 3.3379 -2.6546 17 7 -1.3222 3.8712 -2.5264 18 6 -1.5131 5.2361 -2.0332 19 6 -2.7984 5.8132 -2.6359 20 6 -3.9592 4.8690 -2.3051 21 7 -3.6354 3.5240 -2.7835 22 6 -2.3661 3.0971 -2.8590 23 8 -2.1530 1.9652 -3.2486 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5137 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 3.8294 -0.0615 2.9497 30 1 2.2719 2.1232 -1.9977 31 1 0.0673 2.6132 -3.4683 32 1 0.7277 4.1531 -2.8676 33 1 -0.6637 5.8522 -2.3285 34 1 -1.5944 5.2228 -0.9464 35 1 -2.6906 5.8959 -3.7174 36 1 -2.9950 6.7977 -2.2114 37 1 -4.8665 5.2216 -2.7954 38 1 -4.1139 4.8446 -1.2264 39 1 -4.3537 2.9280 -3.0474 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000546568543.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:00 Heat of formation + Delta-G solvation = -91.686145 kcal Electronic energy + Delta-G solvation = -21535.501051 eV Core-core repulsion = 18283.969739 eV Total energy + Delta-G solvation = -3251.531311 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.77946 -40.31452 -37.46253 -37.00081 -35.69298 -34.27242 -32.90525 -31.95069 -29.68854 -28.31373 -26.37442 -25.00404 -23.91813 -22.23285 -21.14895 -20.00212 -18.86637 -18.56036 -18.21936 -17.63842 -17.17321 -16.50209 -16.25871 -16.11836 -15.51439 -15.28599 -14.85081 -14.62220 -14.57014 -14.32912 -14.03968 -13.56371 -13.19485 -13.06256 -12.87073 -12.72645 -12.62560 -12.29301 -12.20628 -12.13937 -12.04779 -11.61819 -11.19504 -11.04067 -10.88151 -10.53648 -10.12639 -9.60490 -9.52160 -8.14676 -6.32440 1.45254 1.46161 1.58128 1.63070 1.90330 2.15165 2.39572 2.74494 2.97248 3.14761 3.81323 3.95797 4.09510 4.11858 4.35674 4.42498 4.44484 4.51986 4.52953 4.70734 4.73721 4.79967 4.83587 5.04978 5.20699 5.23139 5.35375 5.41251 5.54695 5.62604 5.65581 5.78130 5.95192 6.11890 6.16617 6.76694 6.82298 7.03734 7.35439 7.55361 7.64972 8.91077 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.035453 B = 0.004503 C = 0.004283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.593369 B = 6216.830091 C = 6536.451807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.120 4.120 3 C 0.281 3.719 4 H -0.003 1.003 5 C -0.545 4.545 6 H 0.075 0.925 7 C 0.013 3.987 8 N -0.918 5.918 9 Si 0.973 3.027 10 H -0.258 1.258 11 H -0.283 1.283 12 H -0.281 1.281 13 N -0.706 5.706 14 C 0.480 3.520 15 O -0.584 6.584 16 C 0.118 3.882 17 N -0.605 5.605 18 C 0.102 3.898 19 C -0.140 4.140 20 C 0.102 3.898 21 N -0.733 5.733 22 C 0.702 3.298 23 O -0.648 6.648 24 H 0.023 0.977 25 H 0.037 0.963 26 H 0.038 0.962 27 H 0.038 0.962 28 H 0.072 0.928 29 H 0.264 0.736 30 H 0.404 0.596 31 H 0.109 0.891 32 H 0.148 0.852 33 H 0.108 0.892 34 H 0.048 0.952 35 H 0.084 0.916 36 H 0.130 0.870 37 H 0.118 0.882 38 H 0.059 0.941 39 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.220 13.741 -12.004 20.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.159 4.159 3 C 0.177 3.823 4 H 0.015 0.985 5 C -0.583 4.583 6 H 0.093 0.907 7 C -0.186 4.186 8 N -0.557 5.557 9 Si 0.797 3.203 10 H -0.182 1.182 11 H -0.209 1.209 12 H -0.207 1.207 13 N -0.356 5.356 14 C 0.266 3.734 15 O -0.464 6.464 16 C -0.010 4.010 17 N -0.340 5.340 18 C -0.019 4.019 19 C -0.178 4.178 20 C -0.021 4.021 21 N -0.390 5.390 22 C 0.403 3.597 23 O -0.531 6.531 24 H 0.042 0.958 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.090 0.910 29 H 0.073 0.927 30 H 0.239 0.761 31 H 0.127 0.873 32 H 0.165 0.835 33 H 0.126 0.874 34 H 0.067 0.933 35 H 0.103 0.897 36 H 0.148 0.852 37 H 0.136 0.864 38 H 0.078 0.922 39 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -10.513 13.220 -11.311 20.328 hybrid contribution 0.758 -0.742 0.417 1.140 sum -9.756 12.478 -10.895 19.224 Atomic orbital electron populations 1.21618 0.97508 0.98595 0.99799 1.21794 0.93133 0.99853 1.01096 1.18299 0.93716 0.88697 0.81556 0.98548 1.21625 0.91248 1.38749 1.06667 0.90675 1.25814 1.03452 0.94350 0.95028 1.70071 1.37093 1.38532 1.09961 0.85290 0.78949 0.77729 0.78302 1.18157 1.20949 1.20728 1.46227 1.15691 1.56176 1.17541 1.21828 0.81703 0.78978 0.90932 1.90631 1.52215 1.61076 1.42508 1.21315 0.83858 1.01399 0.94398 1.46433 1.04129 1.15104 1.68304 1.21897 1.01092 0.80532 0.98429 1.22209 0.92355 1.00455 1.02755 1.21833 0.99989 0.80409 0.99873 1.44930 1.04933 1.18244 1.70907 1.15738 0.82305 0.83357 0.78305 1.90904 1.84840 1.20557 1.56833 0.95795 0.94436 0.94267 0.94349 0.90955 0.92682 0.76089 0.87291 0.83479 0.87381 0.93347 0.89723 0.85219 0.86437 0.92223 0.74617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.98 8.52 71.98 0.61 -5.37 16 2 C -0.12 -6.32 5.45 30.60 0.17 -6.15 16 3 C 0.28 14.86 2.24 44.25 0.10 14.96 16 4 H 0.00 -0.21 7.58 -2.38 -0.02 -0.23 16 5 C -0.54 -29.07 8.73 25.60 0.22 -28.85 16 6 H 0.08 3.71 7.74 -2.91 -0.02 3.69 16 7 C 0.01 0.72 5.29 84.65 0.45 1.17 16 8 N -0.92 -53.53 11.29 21.45 0.24 -53.28 16 9 Si 0.97 42.29 29.54 68.60 2.03 44.32 16 10 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 11 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 12 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 13 N -0.71 -29.89 5.02 -446.10 -2.24 -32.13 16 14 C 0.48 19.62 6.46 87.65 0.57 20.18 16 15 O -0.58 -29.04 13.57 -3.04 -0.04 -29.08 16 16 C 0.12 3.43 5.83 85.63 0.50 3.93 16 17 N -0.60 -17.17 2.30 -845.67 -1.95 -19.12 16 18 C 0.10 1.99 6.55 86.48 0.57 2.55 16 19 C -0.14 -1.59 6.20 30.76 0.19 -1.40 16 20 C 0.10 1.41 7.21 86.48 0.62 2.03 16 21 N -0.73 -16.99 5.58 -479.84 -2.68 -19.67 16 22 C 0.70 23.00 8.18 179.45 1.47 24.47 16 23 O -0.65 -27.39 16.50 -3.99 -0.07 -27.46 16 24 H 0.02 1.27 7.85 -2.39 -0.02 1.25 16 25 H 0.04 1.93 5.65 -2.38 -0.01 1.91 16 26 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.04 1.92 8.14 -2.38 -0.02 1.90 16 28 H 0.07 4.20 5.95 -2.39 -0.01 4.19 16 29 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 30 H 0.40 14.23 8.54 -92.71 -0.79 13.44 16 31 H 0.11 3.23 7.32 -2.39 -0.02 3.22 16 32 H 0.15 2.85 7.86 -2.39 -0.02 2.83 16 33 H 0.11 1.50 7.86 -2.39 -0.02 1.48 16 34 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.13 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.42 8.65 8.88 -92.71 -0.82 7.83 16 Total: -1.00 -80.48 316.31 0.21 -80.26 By element: Atomic # 1 Polarization: 29.18 SS G_CDS: -0.54 Total: 28.64 kcal Atomic # 6 Polarization: 22.06 SS G_CDS: 5.46 Total: 27.53 kcal Atomic # 7 Polarization: -117.58 SS G_CDS: -6.63 Total: -124.20 kcal Atomic # 8 Polarization: -56.43 SS G_CDS: -0.11 Total: -56.54 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -80.48 0.21 -80.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000546568543.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.424 kcal (2) G-P(sol) polarization free energy of solvation -80.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds