Wall clock time and date at job start Mon Mar 30 2020 00:51:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29943 * 126.28429 * 2 1 4 4 O 1.21299 * 110.24676 * 180.02562 * 3 2 1 5 5 C 1.33639 * 109.81566 * 359.97438 * 4 3 2 6 6 C 1.50698 * 126.55343 * 179.97438 * 5 4 3 7 7 H 1.09001 * 109.47412 * 165.02278 * 6 5 4 8 8 C 1.52992 * 109.47406 * 285.02918 * 6 5 4 9 9 N 1.46903 * 109.46665 * 45.02834 * 6 5 4 10 10 C 1.46896 * 111.00235 * 56.04634 * 9 6 5 11 11 C 1.46903 * 110.99813 * 179.97438 * 9 6 5 12 12 C 1.53001 * 109.47079 * 159.59440 * 11 9 6 13 13 O 1.42894 * 109.47250 * 66.59185 * 12 11 9 14 14 C 1.42897 * 114.00398 * 179.97438 * 13 12 11 15 15 C 1.50702 * 109.47299 * 180.02562 * 14 13 12 16 16 H 1.08004 * 119.99761 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99833 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99921 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 119.99618 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47419 * 60.00243 * 19 17 15 21 21 H 1.48502 * 109.47020 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47684 * 299.99908 * 19 17 15 23 23 N 1.31130 * 106.89459 * 0.23310 * 5 4 3 24 24 H 1.08995 * 109.47481 * 89.97630 * 1 2 3 25 25 H 1.09007 * 109.47174 * 209.97786 * 1 2 3 26 26 H 1.09000 * 109.47491 * 329.97080 * 1 2 3 27 27 H 1.09002 * 109.47489 * 180.02562 * 8 6 5 28 28 H 1.09001 * 109.46881 * 299.99896 * 8 6 5 29 29 H 1.09005 * 109.47188 * 59.99781 * 8 6 5 30 30 H 1.09001 * 109.47268 * 190.97920 * 10 9 6 31 31 H 1.09003 * 109.47134 * 70.98128 * 10 9 6 32 32 H 1.08998 * 109.47203 * 310.98073 * 10 9 6 33 33 H 1.08993 * 109.47576 * 279.60100 * 11 9 6 34 34 H 1.09001 * 109.46897 * 39.59882 * 11 9 6 35 35 H 1.09004 * 109.46768 * 186.59391 * 12 11 9 36 36 H 1.08997 * 109.47175 * 306.58692 * 12 11 9 37 37 H 1.08998 * 109.47119 * 300.00023 * 14 13 12 38 38 H 1.08999 * 109.47288 * 59.99975 * 14 13 12 39 39 H 0.97002 * 119.99497 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2760 1.0475 0.0000 4 8 3.4418 0.7124 -0.0005 5 6 3.5298 -0.6211 -0.0003 6 6 4.7969 -1.4369 -0.0014 7 1 4.5653 -2.4683 0.2646 8 6 5.4269 -1.3988 -1.3950 9 7 5.7394 -0.8787 0.9775 10 6 5.1329 -0.8125 2.3138 11 6 6.9889 -1.6507 1.0047 12 6 8.1028 -0.7968 1.6138 13 8 7.8166 -0.5533 2.9924 14 6 8.8010 0.2394 3.6593 15 6 8.4001 0.4315 5.0992 16 1 7.4848 -0.0074 5.4681 17 6 9.2012 1.1686 5.9454 18 7 10.3154 1.7035 5.4960 19 14 8.7038 1.4074 7.7300 20 1 8.6000 0.0843 8.3963 21 1 9.7268 2.2311 8.4230 22 1 7.3895 2.0961 7.7898 23 7 2.3030 -1.0841 -0.0048 24 1 -0.3634 0.0004 -1.0276 25 1 -0.3634 -0.8902 0.5135 26 1 -0.3634 0.8897 0.5143 27 1 6.3432 -1.9893 -1.3959 28 1 4.7276 -1.8130 -2.1213 29 1 5.6587 -0.3674 -1.6610 30 1 5.7699 -0.2229 2.9731 31 1 5.0281 -1.8203 2.7156 32 1 4.1506 -0.3451 2.2442 33 1 6.8485 -2.5482 1.6070 34 1 7.2629 -1.9343 -0.0115 35 1 9.0530 -1.3238 1.5274 36 1 8.1645 0.1528 1.0823 37 1 9.7655 -0.2665 3.6155 38 1 8.8776 1.2105 3.1704 39 1 10.8787 2.2224 6.0913 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563358199.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:51:56 Heat of formation + Delta-G solvation = 27.710540 kcal Electronic energy + Delta-G solvation = -20777.648675 eV Core-core repulsion = 17531.294793 eV Total energy + Delta-G solvation = -3246.353882 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -45.62077 -38.56020 -36.44384 -36.05007 -33.36987 -32.63087 -30.98770 -29.58868 -29.15288 -26.99902 -24.94196 -24.54322 -23.35695 -22.27586 -21.50852 -20.13624 -18.19976 -17.34913 -16.47362 -16.15412 -15.84923 -15.57661 -15.07993 -14.34920 -14.14941 -13.91281 -13.77112 -13.60695 -13.21422 -12.92043 -12.62655 -12.42263 -12.35325 -11.94009 -11.72309 -11.60570 -11.47987 -11.25467 -11.17453 -11.09884 -10.78808 -10.72408 -10.51171 -10.02297 -9.91252 -9.10223 -8.79853 -8.34580 -8.13495 -6.10234 -4.11987 1.09350 2.11078 2.75039 3.32370 3.33602 3.35393 3.38874 3.83616 4.09753 4.34942 4.62235 4.77340 4.90172 4.99770 5.12241 5.13532 5.22980 5.26428 5.32713 5.45290 5.54680 5.63395 5.73673 5.74937 5.80070 5.85634 5.91799 6.03567 6.09856 6.32687 6.66427 7.03495 7.04749 7.15063 7.45863 7.78960 8.13378 8.16326 8.58312 9.00771 9.52877 11.01203 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.022477 B = 0.004012 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.392679 B = 6977.080119 C = 7841.239092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.161 3.839 3 N -0.388 5.388 4 O 0.097 5.903 5 C 0.204 3.796 6 C 0.168 3.832 7 H 0.085 0.915 8 C -0.149 4.149 9 N -0.528 5.528 10 C 0.023 3.977 11 C 0.057 3.943 12 C 0.067 3.933 13 O -0.394 6.394 14 C 0.196 3.804 15 C -0.515 4.515 16 H 0.064 0.936 17 C 0.057 3.943 18 N -0.898 5.898 19 Si 0.906 3.094 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.275 1.275 23 N -0.489 5.489 24 H 0.086 0.914 25 H 0.090 0.910 26 H 0.086 0.914 27 H 0.081 0.919 28 H 0.066 0.934 29 H 0.076 0.924 30 H 0.114 0.886 31 H 0.029 0.971 32 H 0.043 0.957 33 H 0.048 0.952 34 H 0.087 0.913 35 H 0.043 0.957 36 H 0.049 0.951 37 H 0.003 0.997 38 H 0.006 0.994 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.354 -7.016 -14.222 20.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.112 4.112 3 N -0.095 5.095 4 O 0.039 5.961 5 C -0.017 4.017 6 C 0.057 3.943 7 H 0.103 0.897 8 C -0.207 4.207 9 N -0.254 5.254 10 C -0.124 4.124 11 C -0.070 4.070 12 C -0.011 4.011 13 O -0.314 6.314 14 C 0.122 3.878 15 C -0.553 4.553 16 H 0.083 0.917 17 C -0.144 4.144 18 N -0.537 5.537 19 Si 0.734 3.266 20 H -0.201 1.201 21 H -0.212 1.212 22 H -0.200 1.200 23 N -0.224 5.224 24 H 0.105 0.895 25 H 0.108 0.892 26 H 0.105 0.895 27 H 0.100 0.900 28 H 0.085 0.915 29 H 0.095 0.905 30 H 0.132 0.868 31 H 0.047 0.953 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.106 0.894 35 H 0.061 0.939 36 H 0.067 0.933 37 H 0.021 0.979 38 H 0.024 0.976 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.898 -5.977 -14.210 20.755 hybrid contribution 0.016 -0.512 1.129 1.240 sum -13.882 -6.489 -13.081 20.147 Atomic orbital electron populations 1.20103 0.83069 1.04606 1.04065 1.25870 1.00525 0.83656 1.01163 1.74671 0.89671 1.24068 1.21122 1.85373 1.21657 1.24479 1.64637 1.28545 0.96197 0.82301 0.94616 1.20184 0.84229 0.93661 0.96217 0.89700 1.21994 1.01348 1.04376 0.93013 1.62148 1.03957 1.51877 1.07398 1.22667 0.99209 1.01173 0.89393 1.22360 0.88985 0.95092 1.00606 1.22243 0.94905 0.98227 0.85704 1.87812 1.49755 1.73874 1.19949 1.20166 0.86590 0.89108 0.91938 1.21008 1.08029 1.32608 0.93691 0.91734 1.24933 0.94822 0.95390 0.99274 1.69950 1.12886 1.34671 1.36202 0.86426 0.78243 0.78250 0.83729 1.20078 1.21164 1.20031 1.71873 0.99580 1.29622 1.21347 0.89512 0.89165 0.89542 0.90013 0.91514 0.90513 0.86764 0.95260 0.93804 0.93366 0.89443 0.93909 0.93315 0.97869 0.97607 0.92612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.51 10.51 36.01 0.38 -0.13 16 2 C 0.16 2.10 8.22 -156.38 -1.28 0.82 16 3 N -0.39 -5.82 12.16 30.89 0.38 -5.44 16 4 O 0.10 1.49 11.18 18.11 0.20 1.69 16 5 C 0.20 2.77 5.51 -13.06 -0.07 2.70 16 6 C 0.17 1.94 2.62 -68.87 -0.18 1.76 16 7 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 8 C -0.15 -1.32 9.02 37.15 0.34 -0.98 16 9 N -0.53 -7.50 4.55 -236.29 -1.07 -8.57 16 10 C 0.02 0.37 8.97 60.06 0.54 0.91 16 11 C 0.06 0.76 5.41 -3.82 -0.02 0.74 16 12 C 0.07 1.16 6.25 37.16 0.23 1.40 16 13 O -0.39 -8.92 7.63 -35.23 -0.27 -9.19 16 14 C 0.20 5.25 5.69 36.01 0.20 5.45 16 15 C -0.52 -14.92 9.43 -34.44 -0.32 -15.24 16 16 H 0.06 1.84 7.81 -52.48 -0.41 1.43 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.90 -26.78 13.29 55.43 0.74 -26.04 16 19 Si 0.91 21.80 29.54 -169.99 -5.02 16.78 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 22 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 23 N -0.49 -6.73 11.55 -9.88 -0.11 -6.84 16 24 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.08 0.59 6.04 -51.93 -0.31 0.28 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.11 2.25 5.90 -51.93 -0.31 1.95 16 31 H 0.03 0.45 7.93 -51.93 -0.41 0.04 16 32 H 0.04 0.70 6.50 -51.93 -0.34 0.37 16 33 H 0.05 0.65 7.84 -51.93 -0.41 0.24 16 34 H 0.09 0.87 5.53 -51.93 -0.29 0.59 16 35 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.00 0.10 8.14 -51.93 -0.42 -0.33 16 38 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 39 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 325.58 15.07 4.91 4.91 Total: -1.00 -32.32 325.58 -6.38 -38.71 By element: Atomic # 1 Polarization: 0.88 SS G_CDS: -5.84 Total: -4.96 kcal Atomic # 6 Polarization: -0.75 SS G_CDS: -0.29 Total: -1.04 kcal Atomic # 7 Polarization: -46.82 SS G_CDS: -0.08 Total: -46.90 kcal Atomic # 8 Polarization: -7.43 SS G_CDS: -0.07 Total: -7.50 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -32.32 -6.38 -38.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563358199.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.419 kcal (2) G-P(sol) polarization free energy of solvation -32.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.708 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds