Wall clock time and date at job start Mon Mar 30 2020 01:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46921 * 2 1 4 4 H 1.09002 * 109.47079 * 180.52612 * 3 2 1 5 5 C 1.50697 * 109.47124 * 300.52394 * 3 2 1 6 6 H 1.07995 * 120.00153 * 120.00721 * 5 3 2 7 7 C 1.37877 * 119.99856 * 300.00214 * 5 3 2 8 8 N 1.31514 * 120.00126 * 180.02562 * 7 5 3 9 9 Si 1.86799 * 120.00143 * 359.97438 * 7 5 3 10 10 H 1.48500 * 109.47225 * 90.00000 * 9 7 5 11 11 H 1.48498 * 109.47335 * 210.00191 * 9 7 5 12 12 H 1.48507 * 109.47326 * 330.00160 * 9 7 5 13 13 N 1.46898 * 109.47582 * 60.52646 * 3 2 1 14 14 C 1.46897 * 111.00528 * 85.94677 * 13 3 2 15 15 C 1.52995 * 109.47569 * 175.51071 * 14 13 3 16 16 N 1.46498 * 109.47540 * 180.02562 * 15 14 13 17 17 C 1.33787 * 124.18169 * 90.01822 * 16 15 14 18 18 O 1.21541 * 123.77009 * 359.96635 * 17 16 15 19 19 N 1.34522 * 112.46094 * 179.97438 * 17 16 15 20 20 C 1.47308 * 106.61878 * 0.02562 * 19 17 16 21 21 H 1.09001 * 110.60125 * 118.53106 * 20 19 17 22 22 C 1.53007 * 110.59935 * 241.47321 * 20 19 17 23 23 C 1.34769 * 124.17404 * 269.72648 * 16 15 14 24 24 O 1.21230 * 127.16164 * 359.97438 * 23 16 15 25 25 H 1.08994 * 109.47204 * 65.16895 * 1 2 3 26 26 H 1.08999 * 109.47174 * 185.16900 * 1 2 3 27 27 H 1.08998 * 109.47184 * 305.16966 * 1 2 3 28 28 H 1.08991 * 109.47266 * 239.99652 * 2 1 3 29 29 H 1.09000 * 109.47205 * 119.99627 * 2 1 3 30 30 H 0.97003 * 120.00276 * 180.02562 * 8 7 5 31 31 H 1.00900 * 111.00394 * 209.90563 * 13 3 2 32 32 H 1.08999 * 109.47234 * 295.51177 * 14 13 3 33 33 H 1.09001 * 109.46702 * 55.50763 * 14 13 3 34 34 H 1.09008 * 109.46981 * 300.00041 * 15 14 13 35 35 H 1.08998 * 109.46970 * 59.99758 * 15 14 13 36 36 H 0.97006 * 126.68982 * 179.97438 * 19 17 16 37 37 H 1.09000 * 109.46829 * 58.54814 * 22 20 19 38 38 H 1.09000 * 109.46943 * 178.54045 * 22 20 19 39 39 H 1.08999 * 109.47116 * 298.54825 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1299 1.4426 -0.0094 5 6 1.5270 2.1567 -1.2239 6 1 0.9071 3.0344 -1.1168 7 6 1.8493 1.6894 -2.4804 8 7 1.4021 2.3129 -3.5485 9 14 2.9223 0.1716 -2.6657 10 1 2.0638 -1.0395 -2.7071 11 1 3.7032 0.2681 -3.9251 12 1 3.8529 0.0794 -1.5121 13 7 1.5607 2.1314 1.2057 14 6 2.4663 1.9006 2.3391 15 6 1.9973 2.7212 3.5421 16 7 2.9007 2.4914 4.6722 17 6 3.9946 3.2207 4.9204 18 8 4.3551 4.1541 4.2305 19 7 4.6509 2.8053 6.0187 20 6 3.8928 1.6620 6.5554 21 1 4.5059 0.7608 6.5544 22 6 3.3847 1.9675 7.9659 23 6 2.7295 1.5228 5.5935 24 8 1.8328 0.7084 5.6419 25 1 -0.3633 0.4315 -0.9326 26 1 -0.3633 -1.0235 0.0926 27 1 -0.3633 0.5919 0.8400 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6285 1.9839 -4.4325 31 1 1.4401 3.1184 1.0345 32 1 2.4621 0.8417 2.5977 33 1 3.4767 2.2035 2.0643 34 1 2.0015 3.7801 3.2835 35 1 0.9869 2.4183 3.8168 36 1 5.4652 3.1842 6.3852 37 1 2.7538 2.8559 7.9403 38 1 2.8054 1.1210 8.3347 39 1 4.2330 2.1432 8.6275 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581319021.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:14 Heat of formation + Delta-G solvation = -38.702687 kcal Electronic energy + Delta-G solvation = -21090.952508 eV Core-core repulsion = 17841.718732 eV Total energy + Delta-G solvation = -3249.233776 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.55496 -38.71790 -37.02163 -36.41537 -35.28021 -32.68806 -31.43930 -30.80779 -28.67148 -26.33032 -24.94245 -23.09889 -23.01497 -22.19378 -20.46923 -19.37079 -18.20980 -17.30724 -16.73565 -16.29333 -15.76213 -15.66037 -15.41356 -14.84478 -14.37192 -14.26779 -13.75648 -13.51017 -13.31360 -13.06394 -12.95567 -12.78872 -12.44011 -12.30196 -11.74846 -11.36513 -11.02581 -10.96323 -10.65688 -10.56274 -10.32849 -10.18404 -10.01280 -9.84344 -9.67518 -9.30353 -8.94881 -8.56126 -7.56427 -6.09055 -4.07877 1.45170 2.04815 2.85855 2.88691 3.28257 3.37539 3.39121 3.69313 4.30007 4.39640 4.46932 4.88224 4.95007 5.04952 5.15943 5.23686 5.30076 5.45378 5.52388 5.56479 5.64678 6.08179 6.13502 6.22463 6.27129 6.48541 6.51474 6.73863 6.90164 6.92261 7.14769 7.20940 7.24410 7.48447 7.60123 7.86103 7.95849 8.28720 8.59024 8.95099 9.53263 11.03732 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.029979 B = 0.004398 C = 0.004186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.760091 B = 6365.424241 C = 6686.855990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.113 4.113 3 C 0.187 3.813 4 H 0.001 0.999 5 C -0.514 4.514 6 H 0.080 0.920 7 C 0.074 3.926 8 N -0.897 5.897 9 Si 0.886 3.114 10 H -0.276 1.276 11 H -0.297 1.297 12 H -0.270 1.270 13 N -0.670 5.670 14 C 0.045 3.955 15 C 0.119 3.881 16 N -0.572 5.572 17 C 0.700 3.300 18 O -0.537 6.537 19 N -0.729 5.729 20 C 0.090 3.910 21 H 0.127 0.873 22 C -0.151 4.151 23 C 0.522 3.478 24 O -0.461 6.461 25 H 0.062 0.938 26 H 0.020 0.980 27 H 0.060 0.940 28 H 0.041 0.959 29 H 0.030 0.970 30 H 0.264 0.736 31 H 0.342 0.658 32 H 0.067 0.933 33 H 0.029 0.971 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.438 0.562 37 H 0.067 0.933 38 H 0.084 0.916 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.764 -1.676 22.953 23.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.151 4.151 3 C 0.078 3.922 4 H 0.019 0.981 5 C -0.552 4.552 6 H 0.098 0.902 7 C -0.128 4.128 8 N -0.535 5.535 9 Si 0.716 3.284 10 H -0.203 1.203 11 H -0.225 1.225 12 H -0.195 1.195 13 N -0.302 5.302 14 C -0.086 4.086 15 C -0.002 4.002 16 N -0.319 5.319 17 C 0.400 3.600 18 O -0.410 6.410 19 N -0.394 5.394 20 C -0.019 4.019 21 H 0.145 0.855 22 C -0.209 4.209 23 C 0.308 3.692 24 O -0.330 6.330 25 H 0.081 0.919 26 H 0.039 0.961 27 H 0.079 0.921 28 H 0.059 0.941 29 H 0.049 0.951 30 H 0.074 0.926 31 H 0.160 0.840 32 H 0.086 0.914 33 H 0.047 0.953 34 H 0.114 0.886 35 H 0.121 0.879 36 H 0.283 0.717 37 H 0.086 0.914 38 H 0.103 0.897 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.932 -2.114 22.478 23.110 hybrid contribution 1.798 -0.238 -0.373 1.852 sum 6.730 -2.352 22.105 23.227 Atomic orbital electron populations 1.21457 0.95428 0.98121 1.03146 1.21740 0.97518 0.98042 0.97760 1.19584 0.93106 0.91425 0.88105 0.98124 1.21007 1.32513 1.13266 0.88409 0.90209 1.24871 0.95420 0.96715 0.95792 1.69883 1.45301 1.40354 0.97979 0.86877 0.80919 0.83829 0.76748 1.20321 1.22515 1.19522 1.60472 1.47450 1.16810 1.05459 1.22226 0.95252 0.99577 0.91516 1.21792 0.92429 1.02333 0.83657 1.46410 1.26036 1.31674 1.27734 1.15927 0.80105 0.82176 0.81745 1.91048 1.69327 1.28924 1.51664 1.45593 1.29818 1.35224 1.28797 1.22095 0.92425 0.92107 0.95311 0.85519 1.21960 1.02559 1.03736 0.92630 1.20854 0.86498 0.80039 0.81764 1.90831 1.34085 1.35094 1.72962 0.91854 0.96110 0.92124 0.94126 0.95134 0.92591 0.84002 0.91446 0.95277 0.88624 0.87854 0.71730 0.91428 0.89687 0.90373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.67 9.48 37.16 0.35 -2.32 16 2 C -0.11 -2.56 5.29 -26.73 -0.14 -2.70 16 3 C 0.19 4.44 1.90 -68.87 -0.13 4.31 16 4 H 0.00 0.03 6.77 -51.93 -0.35 -0.32 16 5 C -0.51 -14.16 7.98 -34.44 -0.27 -14.43 16 6 H 0.08 2.36 7.85 -52.49 -0.41 1.95 16 7 C 0.07 2.13 5.45 -17.82 -0.10 2.03 16 8 N -0.90 -27.24 13.96 55.43 0.77 -26.46 16 9 Si 0.89 22.30 24.37 -169.99 -4.14 18.16 16 10 H -0.28 -6.80 6.87 56.52 0.39 -6.42 16 11 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 12 H -0.27 -6.62 6.53 56.52 0.37 -6.25 16 13 N -0.67 -13.45 5.50 -107.96 -0.59 -14.05 16 14 C 0.05 0.78 5.86 -3.83 -0.02 0.76 16 15 C 0.12 1.69 5.92 -4.05 -0.02 1.67 16 16 N -0.57 -7.30 2.60 -120.73 -0.31 -7.62 16 17 C 0.70 8.87 8.62 -88.03 -0.76 8.11 16 18 O -0.54 -8.92 17.48 5.33 0.09 -8.83 16 19 N -0.73 -5.73 6.24 -59.19 -0.37 -6.09 16 20 C 0.09 0.61 4.33 -68.20 -0.30 0.32 16 21 H 0.13 0.60 8.14 -51.93 -0.42 0.18 16 22 C -0.15 -0.71 9.62 37.16 0.36 -0.35 16 23 C 0.52 5.94 7.64 -10.55 -0.08 5.86 16 24 O -0.46 -6.53 17.75 5.60 0.10 -6.43 16 25 H 0.06 1.50 7.39 -51.93 -0.38 1.12 16 26 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 1.26 7.46 -51.93 -0.39 0.87 16 28 H 0.04 0.97 3.28 -51.93 -0.17 0.80 16 29 H 0.03 0.63 7.59 -51.93 -0.39 0.24 16 30 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 31 H 0.34 6.79 8.14 -39.29 -0.32 6.47 16 32 H 0.07 1.20 7.60 -51.93 -0.39 0.81 16 33 H 0.03 0.54 7.94 -51.93 -0.41 0.13 16 34 H 0.10 1.34 7.86 -51.92 -0.41 0.94 16 35 H 0.10 1.42 8.00 -51.93 -0.42 1.01 16 36 H 0.44 2.28 8.96 -40.82 -0.37 1.91 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16 LS Contribution 318.38 15.07 4.80 4.80 Total: -1.00 -33.53 318.38 -6.48 -40.01 By element: Atomic # 1 Polarization: 8.96 SS G_CDS: -5.71 Total: 3.24 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: -1.12 Total: 3.27 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: -0.50 Total: -54.22 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: 0.19 Total: -15.25 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.14 Total: 18.16 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -33.53 -6.48 -40.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581319021.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.309 kcal (2) G-P(sol) polarization free energy of solvation -33.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds