Wall clock time and date at job start Mon Mar 30 2020 01:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.46921 * 2 1 4 4 H 1.09002 * 109.47079 * 180.52612 * 3 2 1 5 5 C 1.50697 * 109.47124 * 300.52394 * 3 2 1 6 6 H 1.07995 * 120.00153 * 120.00721 * 5 3 2 7 7 C 1.37877 * 119.99856 * 300.00214 * 5 3 2 8 8 N 1.31514 * 120.00126 * 180.02562 * 7 5 3 9 9 Si 1.86799 * 120.00143 * 359.97438 * 7 5 3 10 10 H 1.48500 * 109.47225 * 90.00000 * 9 7 5 11 11 H 1.48498 * 109.47335 * 210.00191 * 9 7 5 12 12 H 1.48507 * 109.47326 * 330.00160 * 9 7 5 13 13 N 1.46898 * 109.47582 * 60.52646 * 3 2 1 14 14 C 1.46897 * 111.00528 * 85.94677 * 13 3 2 15 15 C 1.52995 * 109.47569 * 175.51071 * 14 13 3 16 16 N 1.46498 * 109.47540 * 180.02562 * 15 14 13 17 17 C 1.33787 * 124.18169 * 90.01822 * 16 15 14 18 18 O 1.21541 * 123.77009 * 359.96635 * 17 16 15 19 19 N 1.34522 * 112.46094 * 179.97438 * 17 16 15 20 20 C 1.47308 * 106.61878 * 0.02562 * 19 17 16 21 21 H 1.09001 * 110.60125 * 118.53106 * 20 19 17 22 22 C 1.53007 * 110.59935 * 241.47321 * 20 19 17 23 23 C 1.34769 * 124.17404 * 269.72648 * 16 15 14 24 24 O 1.21230 * 127.16164 * 359.97438 * 23 16 15 25 25 H 1.08994 * 109.47204 * 65.16895 * 1 2 3 26 26 H 1.08999 * 109.47174 * 185.16900 * 1 2 3 27 27 H 1.08998 * 109.47184 * 305.16966 * 1 2 3 28 28 H 1.08991 * 109.47266 * 239.99652 * 2 1 3 29 29 H 1.09000 * 109.47205 * 119.99627 * 2 1 3 30 30 H 0.97003 * 120.00276 * 180.02562 * 8 7 5 31 31 H 1.00900 * 111.00394 * 209.90563 * 13 3 2 32 32 H 1.08999 * 109.47234 * 295.51177 * 14 13 3 33 33 H 1.09001 * 109.46702 * 55.50763 * 14 13 3 34 34 H 1.09008 * 109.46981 * 300.00041 * 15 14 13 35 35 H 1.08998 * 109.46970 * 59.99758 * 15 14 13 36 36 H 0.97006 * 126.68982 * 179.97438 * 19 17 16 37 37 H 1.09000 * 109.46829 * 58.54814 * 22 20 19 38 38 H 1.09000 * 109.46943 * 178.54045 * 22 20 19 39 39 H 1.08999 * 109.47116 * 298.54825 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1299 1.4426 -0.0094 5 6 1.5270 2.1567 -1.2239 6 1 0.9071 3.0344 -1.1168 7 6 1.8493 1.6894 -2.4804 8 7 1.4021 2.3129 -3.5485 9 14 2.9223 0.1716 -2.6657 10 1 2.0638 -1.0395 -2.7071 11 1 3.7032 0.2681 -3.9251 12 1 3.8529 0.0794 -1.5121 13 7 1.5607 2.1314 1.2057 14 6 2.4663 1.9006 2.3391 15 6 1.9973 2.7212 3.5421 16 7 2.9007 2.4914 4.6722 17 6 3.9946 3.2207 4.9204 18 8 4.3551 4.1541 4.2305 19 7 4.6509 2.8053 6.0187 20 6 3.8928 1.6620 6.5554 21 1 4.5059 0.7608 6.5544 22 6 3.3847 1.9675 7.9659 23 6 2.7295 1.5228 5.5935 24 8 1.8328 0.7084 5.6419 25 1 -0.3633 0.4315 -0.9326 26 1 -0.3633 -1.0235 0.0926 27 1 -0.3633 0.5919 0.8400 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6285 1.9839 -4.4325 31 1 1.4401 3.1184 1.0345 32 1 2.4621 0.8417 2.5977 33 1 3.4767 2.2035 2.0643 34 1 2.0015 3.7801 3.2835 35 1 0.9869 2.4183 3.8168 36 1 5.4652 3.1842 6.3852 37 1 2.7538 2.8559 7.9403 38 1 2.8054 1.1210 8.3347 39 1 4.2330 2.1432 8.6275 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000581319021.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:14 Heat of formation + Delta-G solvation = -65.790773 kcal Electronic energy + Delta-G solvation = -21092.127136 eV Core-core repulsion = 17841.718732 eV Total energy + Delta-G solvation = -3250.408404 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.46210 -39.71640 -38.64635 -37.39791 -36.48110 -34.49218 -33.25149 -31.43412 -30.14549 -28.10102 -25.78377 -25.00429 -24.25568 -23.11369 -21.47351 -21.21529 -19.10818 -18.66429 -18.15766 -17.65980 -17.15996 -16.66636 -16.52590 -16.04929 -15.74735 -15.36187 -15.23763 -15.13707 -14.78035 -14.65658 -14.21101 -13.95592 -13.38846 -13.22188 -13.04579 -12.89493 -12.68880 -12.51801 -12.41548 -12.11382 -11.97477 -11.82020 -11.28913 -11.23977 -11.03049 -10.90775 -10.69474 -10.48233 -9.27086 -8.31239 -6.33609 0.56128 1.12313 1.28126 1.31925 1.41194 1.88907 2.18156 2.29197 2.92200 3.04330 3.42357 3.67174 3.87816 3.98726 4.05684 4.27211 4.35541 4.37395 4.40757 4.47167 4.67161 4.74297 4.78670 4.80989 4.89655 4.94734 5.13928 5.21639 5.33625 5.35451 5.60441 5.74379 5.80472 5.92846 6.01457 6.34239 6.42590 6.57696 6.77948 7.07073 7.31370 8.84962 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.029979 B = 0.004398 C = 0.004186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.760091 B = 6365.424241 C = 6686.855990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.114 4.114 3 C 0.191 3.809 4 H -0.011 1.011 5 C -0.511 4.511 6 H 0.046 0.954 7 C 0.022 3.978 8 N -0.943 5.943 9 Si 0.941 3.059 10 H -0.264 1.264 11 H -0.297 1.297 12 H -0.258 1.258 13 N -0.666 5.666 14 C 0.054 3.946 15 C 0.127 3.873 16 N -0.579 5.579 17 C 0.695 3.305 18 O -0.584 6.584 19 N -0.703 5.703 20 C 0.101 3.899 21 H 0.162 0.838 22 C -0.146 4.146 23 C 0.516 3.484 24 O -0.491 6.491 25 H 0.032 0.968 26 H 0.048 0.952 27 H 0.064 0.936 28 H 0.032 0.968 29 H 0.054 0.946 30 H 0.266 0.734 31 H 0.340 0.660 32 H 0.067 0.933 33 H 0.015 0.985 34 H 0.093 0.907 35 H 0.109 0.891 36 H 0.454 0.546 37 H 0.056 0.944 38 H 0.090 0.910 39 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.011 -3.461 25.765 26.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.152 4.152 3 C 0.081 3.919 4 H 0.006 0.994 5 C -0.549 4.549 6 H 0.064 0.936 7 C -0.177 4.177 8 N -0.583 5.583 9 Si 0.769 3.231 10 H -0.190 1.190 11 H -0.225 1.225 12 H -0.183 1.183 13 N -0.298 5.298 14 C -0.076 4.076 15 C 0.005 3.995 16 N -0.325 5.325 17 C 0.395 3.605 18 O -0.461 6.461 19 N -0.369 5.369 20 C -0.006 4.006 21 H 0.179 0.821 22 C -0.204 4.204 23 C 0.305 3.695 24 O -0.362 6.362 25 H 0.051 0.949 26 H 0.067 0.933 27 H 0.083 0.917 28 H 0.050 0.950 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.159 0.841 32 H 0.086 0.914 33 H 0.033 0.967 34 H 0.112 0.888 35 H 0.127 0.873 36 H 0.301 0.699 37 H 0.075 0.925 38 H 0.109 0.891 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 6.203 -3.918 25.371 26.411 hybrid contribution 1.372 0.376 -1.161 1.836 sum 7.575 -3.542 24.210 25.614 Atomic orbital electron populations 1.21366 0.94659 0.99709 1.01677 1.21718 0.98205 0.96839 0.98416 1.19426 0.92142 0.92394 0.87952 0.99370 1.21218 1.31251 1.12278 0.90157 0.93592 1.25626 0.96841 0.99679 0.95506 1.70014 1.47307 1.42370 0.98586 0.85963 0.79556 0.80660 0.76924 1.18977 1.22512 1.18266 1.60408 1.47918 1.16531 1.04910 1.22161 0.93932 1.00039 0.91493 1.21521 0.92996 1.01605 0.83353 1.46451 1.26037 1.32385 1.27579 1.16096 0.80166 0.81702 0.82493 1.91019 1.70481 1.30997 1.53558 1.45526 1.29664 1.34797 1.26930 1.22324 0.90667 0.92735 0.94894 0.82112 1.21996 1.03629 1.03517 0.91211 1.21634 0.87184 0.78853 0.81838 1.90815 1.35619 1.36073 1.73699 0.94868 0.93325 0.91662 0.95002 0.92750 0.92500 0.84146 0.91420 0.96690 0.88834 0.87281 0.69893 0.92464 0.89083 0.87378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.86 9.48 71.98 0.68 -4.18 16 2 C -0.11 -4.97 5.29 30.59 0.16 -4.80 16 3 C 0.19 9.02 1.90 44.17 0.08 9.10 16 4 H -0.01 -0.56 6.77 -2.39 -0.02 -0.57 16 5 C -0.51 -28.80 7.98 25.60 0.20 -28.60 16 6 H 0.05 2.84 7.85 -2.91 -0.02 2.82 16 7 C 0.02 1.26 5.45 84.65 0.46 1.72 16 8 N -0.94 -58.76 13.96 21.45 0.30 -58.46 16 9 Si 0.94 45.81 24.37 68.60 1.67 47.48 16 10 H -0.26 -12.24 6.87 99.48 0.68 -11.56 16 11 H -0.30 -14.37 7.11 99.48 0.71 -13.67 16 12 H -0.26 -11.97 6.53 99.48 0.65 -11.32 16 13 N -0.67 -26.74 5.50 -495.47 -2.73 -29.46 16 14 C 0.05 1.86 5.86 86.30 0.51 2.36 16 15 C 0.13 3.57 5.92 86.38 0.51 4.08 16 16 N -0.58 -14.09 2.60 -773.14 -2.01 -16.11 16 17 C 0.69 16.74 8.62 179.44 1.55 18.29 16 18 O -0.58 -19.33 17.48 -3.84 -0.07 -19.39 16 19 N -0.70 -9.03 6.24 -459.61 -2.87 -11.90 16 20 C 0.10 1.03 4.33 44.38 0.19 1.22 16 21 H 0.16 0.74 8.14 -2.39 -0.02 0.72 16 22 C -0.15 -0.80 9.62 71.98 0.69 -0.11 16 23 C 0.52 10.68 7.64 87.94 0.67 11.35 16 24 O -0.49 -13.07 17.75 -2.87 -0.05 -13.13 16 25 H 0.03 1.55 7.39 -2.39 -0.02 1.53 16 26 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 27 H 0.06 2.62 7.46 -2.39 -0.02 2.60 16 28 H 0.03 1.45 3.28 -2.39 -0.01 1.44 16 29 H 0.05 2.11 7.59 -2.39 -0.02 2.09 16 30 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 31 H 0.34 13.85 8.14 -89.69 -0.73 13.12 16 32 H 0.07 2.31 7.60 -2.39 -0.02 2.29 16 33 H 0.01 0.56 7.94 -2.39 -0.02 0.54 16 34 H 0.09 2.66 7.86 -2.38 -0.02 2.64 16 35 H 0.11 2.93 8.00 -2.39 -0.02 2.91 16 36 H 0.45 3.21 8.96 -92.70 -0.83 2.38 16 37 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 38 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 39 H 0.11 0.03 8.14 -2.39 -0.02 0.01 16 Total: -1.00 -74.51 318.38 -0.61 -75.12 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -0.56 Total: 15.43 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: 5.71 Total: 10.42 kcal Atomic # 7 Polarization: -108.62 SS G_CDS: -7.31 Total: -115.93 kcal Atomic # 8 Polarization: -32.40 SS G_CDS: -0.12 Total: -32.52 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 1.67 Total: 47.48 kcal Total: -74.51 -0.61 -75.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581319021.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.328 kcal (2) G-P(sol) polarization free energy of solvation -74.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds