Wall clock time and date at job start Mon Mar 30 2020 00:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 115.56133 * 2 1 4 4 C 1.53077 * 117.51098 * 214.29970 * 2 1 3 5 5 C 1.52996 * 117.49937 * 145.69177 * 2 1 3 6 6 C 1.52998 * 117.49813 * 215.00031 * 5 2 1 7 7 N 1.46498 * 117.50041 * 359.97438 * 5 2 1 8 8 C 1.34776 * 120.00370 * 279.65508 * 7 5 2 9 9 O 1.21591 * 119.99731 * 355.00227 * 8 7 5 10 10 N 1.34776 * 120.00216 * 174.99894 * 8 7 5 11 11 C 1.46500 * 120.00018 * 179.97438 * 10 8 7 12 12 C 1.50702 * 109.47270 * 180.02562 * 11 10 8 13 13 O 1.21294 * 119.99719 * 0.02562 * 12 11 10 14 14 N 1.34773 * 120.00113 * 180.02562 * 12 11 10 15 15 C 1.37094 * 119.99942 * 180.02562 * 14 12 11 16 16 H 1.08007 * 120.00028 * 359.97438 * 15 14 12 17 17 C 1.38948 * 120.00207 * 180.02562 * 15 14 12 18 18 N 1.31413 * 119.99952 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00220 * 179.97438 * 17 15 14 20 20 H 1.48492 * 109.47483 * 59.99753 * 19 17 15 21 21 H 1.48505 * 109.47355 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47145 * 299.99542 * 19 17 15 23 23 H 1.09009 * 109.46870 * 274.31358 * 1 2 3 24 24 H 1.09003 * 109.46985 * 34.30475 * 1 2 3 25 25 H 1.08994 * 109.47285 * 154.31277 * 1 2 3 26 26 H 1.09004 * 109.46873 * 205.69191 * 3 2 1 27 27 H 1.09001 * 109.47089 * 325.69208 * 3 2 1 28 28 H 1.08994 * 109.46970 * 85.69139 * 3 2 1 29 29 H 1.09002 * 117.49330 * 145.03621 * 4 2 1 30 30 H 1.08992 * 117.53348 * 359.97438 * 4 2 1 31 31 H 1.09004 * 109.47216 * 199.69048 * 6 5 2 32 32 H 1.08995 * 109.47632 * 319.69530 * 6 5 2 33 33 H 1.08998 * 109.47243 * 79.69607 * 6 5 2 34 34 H 0.97009 * 119.99852 * 99.64852 * 7 5 2 35 35 H 0.96998 * 120.00082 * 0.02562 * 10 8 7 36 36 H 1.08997 * 109.47429 * 300.00577 * 11 10 8 37 37 H 1.09003 * 109.46441 * 60.00976 * 11 10 8 38 38 H 0.96993 * 120.00000 * 359.97438 * 14 12 11 39 39 H 0.96997 * 120.00264 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3803 0.0000 4 6 2.2371 -1.1216 -0.7651 5 6 2.2364 -1.1210 0.7649 6 6 3.5487 -0.7758 1.4718 7 7 1.3961 -2.1119 1.4418 8 6 0.8497 -1.8263 2.6402 9 8 1.1265 -0.7839 3.2017 10 7 -0.0036 -2.6960 3.2163 11 6 -0.5972 -2.3857 4.5193 12 6 -1.5066 -3.5121 4.9381 13 8 -1.6449 -4.4791 4.2191 14 7 -2.1662 -3.4449 6.1115 15 6 -2.9931 -4.4698 6.4926 16 1 -3.1163 -5.3309 5.8524 17 6 -3.6735 -4.4003 7.7021 18 7 -3.5241 -3.3524 8.4809 19 14 -4.8008 -5.7964 8.2212 20 1 -4.0173 -7.0538 8.3221 21 1 -5.4029 -5.4817 9.5417 22 1 -5.8780 -5.9639 7.2127 23 1 -0.3633 0.0773 1.0249 24 1 -0.3633 0.8489 -0.5792 25 1 -0.3633 -0.9260 -0.4454 26 1 3.1824 1.3084 -0.4455 27 1 1.5811 2.0743 -0.5792 28 1 2.2773 1.7413 1.0247 29 1 3.1723 -0.8756 -1.2681 30 1 1.6126 -1.8598 -1.2681 31 1 4.1082 -1.6908 1.6663 32 1 4.1405 -0.1160 0.8374 33 1 3.3323 -0.2748 2.4153 34 1 1.2330 -2.9737 1.0273 35 1 -0.2242 -3.5277 2.7686 36 1 0.1939 -2.2637 5.2591 37 1 -1.1719 -1.4624 4.4460 38 1 -2.0553 -2.6718 6.6866 39 1 -3.9993 -3.3037 9.3250 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596599145.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:05 Heat of formation + Delta-G solvation = -51.250528 kcal Electronic energy + Delta-G solvation = -20554.280013 eV Core-core repulsion = 17304.502122 eV Total energy + Delta-G solvation = -3249.777891 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.29920 -38.71145 -37.81492 -34.36729 -33.63195 -33.16153 -31.36003 -30.13296 -28.16039 -27.37082 -26.83561 -24.46711 -21.47152 -20.75716 -19.59972 -18.62723 -18.21920 -17.91118 -16.10066 -15.56254 -15.49769 -14.93952 -14.68828 -14.56077 -14.06064 -13.95270 -13.73216 -13.55158 -13.14450 -12.73026 -12.43485 -12.30228 -12.15917 -12.12294 -11.95174 -11.87751 -11.61949 -11.21913 -11.09761 -10.50164 -10.31238 -10.27284 -10.07047 -9.68760 -9.61552 -8.93253 -8.61011 -8.52498 -8.08799 -6.50268 -3.92370 2.76494 3.14391 3.22047 3.26007 3.38239 3.57880 3.76979 4.09170 4.35451 4.48161 4.56910 4.77336 4.92267 4.97906 5.18405 5.38382 5.50659 5.55537 5.61114 5.66250 5.71808 5.81181 5.82980 5.91155 5.95804 6.02880 6.10065 6.11011 6.23224 6.27317 6.68761 6.80231 7.13864 7.46748 7.93444 8.29860 8.46643 8.87483 9.05722 9.40858 9.88921 10.66616 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.045282 B = 0.003254 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.197508 B = 8602.312056 C = 8677.690594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.122 4.122 3 C -0.112 4.112 4 C -0.170 4.170 5 C 0.132 3.868 6 C -0.122 4.122 7 N -0.719 5.719 8 C 0.708 3.292 9 O -0.590 6.590 10 N -0.726 5.726 11 C 0.130 3.870 12 C 0.429 3.571 13 O -0.598 6.598 14 N -0.549 5.549 15 C -0.306 4.306 16 H 0.105 0.895 17 C 0.026 3.974 18 N -0.895 5.895 19 Si 0.934 3.066 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.273 1.273 23 H 0.063 0.937 24 H 0.057 0.943 25 H 0.053 0.947 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.102 0.898 30 H 0.097 0.903 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.397 0.603 35 H 0.406 0.594 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.396 0.604 39 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.739 6.354 -15.100 19.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.123 4.123 3 C -0.170 4.170 4 C -0.208 4.208 5 C 0.044 3.956 6 C -0.181 4.181 7 N -0.374 5.374 8 C 0.408 3.592 9 O -0.468 6.468 10 N -0.384 5.384 11 C 0.002 3.998 12 C 0.214 3.786 13 O -0.485 6.485 14 N -0.184 5.184 15 C -0.435 4.435 16 H 0.122 0.878 17 C -0.177 4.177 18 N -0.535 5.535 19 Si 0.760 3.240 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.198 1.198 23 H 0.082 0.918 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.084 0.916 29 H 0.121 0.879 30 H 0.115 0.885 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.231 0.769 35 H 0.243 0.757 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.230 0.770 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 10.761 6.710 -14.806 19.495 hybrid contribution -0.768 -1.092 0.303 1.369 sum 9.993 5.617 -14.503 18.487 Atomic orbital electron populations 1.21245 0.91765 1.01364 1.02362 1.21984 0.95429 0.91686 1.03218 1.21342 0.99445 0.93806 1.02366 1.23682 1.02855 1.01708 0.92548 1.20464 0.92499 0.93171 0.89492 1.21517 0.93396 1.01506 1.01637 1.44372 1.53996 1.18393 1.20616 1.15803 0.79049 0.83649 0.80652 1.90884 1.65829 1.25879 1.64164 1.44786 1.47806 1.23640 1.22129 1.20759 0.96825 0.97807 0.84446 1.19781 0.85713 0.88925 0.84157 1.90488 1.68670 1.35020 1.54326 1.41775 1.39088 1.20626 1.16897 1.19679 1.20603 0.99731 1.03509 0.87759 1.25319 0.98373 0.98149 0.95845 1.69607 1.42799 1.28764 1.12348 0.85874 0.79872 0.80513 0.77712 1.19794 1.20854 1.19787 0.91817 0.92403 0.92748 0.92518 0.92293 0.91625 0.87924 0.88480 0.92350 0.91748 0.90387 0.76889 0.75728 0.90103 0.90104 0.77018 0.91540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.26 9.17 37.16 0.34 -0.92 16 2 C -0.12 -1.29 2.70 -154.47 -0.42 -1.71 16 3 C -0.11 -1.04 8.72 37.16 0.32 -0.72 16 4 C -0.17 -1.47 9.44 -26.69 -0.25 -1.72 16 5 C 0.13 1.49 2.31 -131.82 -0.30 1.18 16 6 C -0.12 -1.34 9.03 37.16 0.34 -1.01 16 7 N -0.72 -9.02 4.88 -52.42 -0.26 -9.28 16 8 C 0.71 11.57 7.78 -86.92 -0.68 10.89 16 9 O -0.59 -11.35 15.14 5.29 0.08 -11.27 16 10 N -0.73 -12.34 5.53 -66.41 -0.37 -12.71 16 11 C 0.13 2.45 6.15 -5.19 -0.03 2.42 16 12 C 0.43 9.90 7.85 -10.99 -0.09 9.82 16 13 O -0.60 -15.37 15.24 5.55 0.08 -15.28 16 14 N -0.55 -13.70 5.29 -10.96 -0.06 -13.76 16 15 C -0.31 -8.35 9.68 -14.94 -0.14 -8.49 16 16 H 0.10 2.96 7.16 -52.48 -0.38 2.58 16 17 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 18 N -0.90 -24.00 13.05 55.50 0.72 -23.28 16 19 Si 0.93 20.60 29.55 -169.99 -5.02 15.58 16 20 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 21 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 22 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 23 H 0.06 0.90 7.63 -51.92 -0.40 0.51 16 24 H 0.06 0.58 7.92 -51.93 -0.41 0.17 16 25 H 0.05 0.59 7.90 -51.93 -0.41 0.18 16 26 H 0.06 0.43 7.28 -51.93 -0.38 0.06 16 27 H 0.06 0.49 7.92 -51.93 -0.41 0.08 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.10 0.73 8.05 -51.93 -0.42 0.31 16 30 H 0.10 0.77 8.05 -51.93 -0.42 0.35 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.56 6.97 -51.93 -0.36 0.20 16 33 H 0.08 1.06 7.05 -51.93 -0.37 0.70 16 34 H 0.40 4.10 8.85 -40.82 -0.36 3.73 16 35 H 0.41 6.73 7.46 -40.82 -0.30 6.42 16 36 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 37 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 38 H 0.40 9.52 7.90 -40.82 -0.32 9.20 16 39 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 329.35 15.07 4.96 4.96 Total: -1.00 -31.26 329.35 -6.62 -37.89 By element: Atomic # 1 Polarization: 22.59 SS G_CDS: -5.76 Total: 16.83 kcal Atomic # 6 Polarization: 11.33 SS G_CDS: -1.01 Total: 10.32 kcal Atomic # 7 Polarization: -59.07 SS G_CDS: 0.04 Total: -59.03 kcal Atomic # 8 Polarization: -26.72 SS G_CDS: 0.16 Total: -26.56 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.26 -6.62 -37.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596599145.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.365 kcal (2) G-P(sol) polarization free energy of solvation -31.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds