Wall clock time and date at job start Mon Mar 30 2020 01:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.08996 * 109.45938 * 2 1 4 4 C 1.53304 * 109.45138 * 119.97267 * 2 1 3 5 5 C 1.51195 * 108.61708 * 200.09847 * 4 2 1 6 6 O 1.21286 * 119.76933 * 108.78005 * 5 4 2 7 7 N 1.33629 * 120.46139 * 288.75218 * 5 4 2 8 8 C 1.46972 * 120.58075 * 359.67992 * 7 5 4 9 9 C 1.53225 * 108.80210 * 72.03986 * 8 7 5 10 10 N 1.46076 * 109.67564 * 278.33616 * 9 8 7 11 11 C 1.34777 * 118.72586 * 243.88051 * 10 9 8 12 12 O 1.21588 * 119.99434 * 173.95412 * 11 10 9 13 13 N 1.34774 * 120.00211 * 353.94955 * 11 10 9 14 14 C 1.46505 * 119.99888 * 185.07737 * 13 11 10 15 15 C 1.52993 * 109.47120 * 180.02562 * 14 13 11 16 16 C 1.50696 * 109.47205 * 180.02562 * 15 14 13 17 17 H 1.07997 * 120.00334 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00144 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00157 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00134 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47055 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47089 * 119.99689 * 20 18 16 23 23 H 1.48504 * 109.47233 * 239.99633 * 20 18 16 24 24 H 1.09001 * 109.46876 * 185.30945 * 1 2 3 25 25 H 1.08998 * 109.47063 * 305.31375 * 1 2 3 26 26 H 1.09001 * 109.46532 * 65.31028 * 1 2 3 27 27 H 1.09005 * 109.61990 * 319.83814 * 4 2 1 28 28 H 1.09000 * 109.61654 * 80.35911 * 4 2 1 29 29 H 0.96996 * 119.69064 * 179.69871 * 7 5 4 30 30 H 1.08999 * 109.62602 * 312.22011 * 8 7 5 31 31 H 1.08997 * 109.54712 * 191.81053 * 8 7 5 32 32 H 1.09000 * 109.42704 * 158.28671 * 9 8 7 33 33 H 1.08997 * 109.42720 * 38.38610 * 9 8 7 34 34 H 0.97002 * 120.00181 * 5.07876 * 13 11 10 35 35 H 1.08996 * 109.46602 * 300.00289 * 14 13 11 36 36 H 1.09002 * 109.46930 * 60.00346 * 14 13 11 37 37 H 1.09006 * 109.47027 * 300.00217 * 15 14 13 38 38 H 1.08998 * 109.47372 * 59.99756 * 15 14 13 39 39 H 0.97005 * 120.00643 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0406 -0.7222 1.2522 5 6 3.4701 -0.2992 1.5043 6 8 3.7277 0.4228 2.4443 7 7 4.4519 -0.7156 0.6990 8 6 4.1610 -1.5969 -0.4406 9 6 3.4375 -0.7854 -1.5203 10 7 2.0170 -0.6886 -1.1936 11 6 1.1210 -1.2567 -2.0249 12 8 -0.0560 -1.2865 -1.7213 13 7 1.5296 -1.7915 -3.1925 14 6 0.5446 -2.3087 -4.1458 15 6 1.2666 -2.8563 -5.3785 16 6 0.2535 -3.3878 -6.3593 17 1 -0.8000 -3.3402 -6.1265 18 6 0.6715 -3.9358 -7.5534 19 7 1.9544 -3.9943 -7.8367 20 14 -0.5844 -4.5952 -8.7689 21 1 -1.9508 -4.4133 -8.2165 22 1 -0.4663 -3.8571 -10.0520 23 1 -0.3343 -6.0400 -9.0042 24 1 -0.3633 -1.0233 0.0951 25 1 -0.3633 0.5940 0.8386 26 1 -0.3632 0.4293 -0.9338 27 1 1.4226 -0.4515 2.1084 28 1 2.0003 -1.8000 1.0950 29 1 5.3644 -0.4339 0.8686 30 1 3.5249 -2.4196 -0.1142 31 1 5.0936 -1.9915 -0.8438 32 1 3.5549 -1.2795 -2.4848 33 1 3.8670 0.2151 -1.5707 34 1 2.4758 -1.8340 -3.4018 35 1 -0.0300 -3.1075 -3.6769 36 1 -0.1279 -1.5049 -4.4454 37 1 1.8416 -2.0577 -5.8474 38 1 1.9390 -3.6601 -5.0786 39 1 2.2486 -4.3795 -8.6770 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000612380229.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:09 Heat of formation + Delta-G solvation = -41.259230 kcal Electronic energy + Delta-G solvation = -21120.628863 eV Core-core repulsion = 17871.284227 eV Total energy + Delta-G solvation = -3249.344636 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.05186 -39.50755 -36.69219 -35.64833 -34.45954 -33.40005 -32.25722 -29.54785 -28.59019 -27.89845 -24.85855 -23.71532 -22.63949 -20.99427 -20.23341 -19.71853 -18.01836 -17.35176 -16.92675 -16.46588 -16.11874 -15.72477 -14.86725 -14.56943 -14.51629 -14.15470 -13.78212 -13.46778 -13.29163 -13.06251 -12.58274 -12.49569 -12.39356 -12.22736 -11.98463 -11.62874 -11.31667 -11.17259 -11.06884 -10.64005 -10.36887 -10.04312 -9.67247 -9.60394 -9.35340 -8.86991 -8.72114 -8.51887 -8.29526 -6.13439 -4.15966 2.37271 2.70220 2.99515 3.25885 3.33879 3.38877 3.40285 4.01533 4.28360 4.40837 4.60599 4.64440 4.75454 4.81572 4.96200 5.05662 5.24131 5.26202 5.41505 5.51883 5.66024 5.82293 6.16030 6.20930 6.34437 6.40225 6.48981 6.70917 6.72765 6.94278 6.96084 7.01167 7.49999 7.57475 7.85608 7.95911 8.17572 8.28834 8.85778 8.91686 9.49249 10.98204 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.038180 B = 0.003714 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.194667 B = 7536.823659 C = 8132.462065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.172 3.828 3 H 0.072 0.928 4 C -0.154 4.154 5 C 0.519 3.481 6 O -0.552 6.552 7 N -0.725 5.725 8 C 0.089 3.911 9 C 0.089 3.911 10 N -0.633 5.633 11 C 0.695 3.305 12 O -0.580 6.580 13 N -0.739 5.739 14 C 0.139 3.861 15 C 0.013 3.987 16 C -0.520 4.520 17 H 0.060 0.940 18 C 0.059 3.941 19 N -0.895 5.895 20 Si 0.896 3.104 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.283 1.283 24 H 0.084 0.916 25 H 0.036 0.964 26 H 0.075 0.925 27 H 0.108 0.892 28 H 0.095 0.905 29 H 0.401 0.599 30 H 0.084 0.916 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.078 0.922 34 H 0.390 0.610 35 H 0.055 0.945 36 H 0.053 0.947 37 H 0.021 0.979 38 H 0.022 0.978 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.959 5.603 14.404 16.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.068 3.932 3 H 0.090 0.910 4 C -0.196 4.196 5 C 0.306 3.694 6 O -0.430 6.430 7 N -0.378 5.378 8 C -0.036 4.036 9 C -0.036 4.036 10 N -0.372 5.372 11 C 0.397 3.603 12 O -0.459 6.459 13 N -0.396 5.396 14 C 0.016 3.984 15 C -0.025 4.025 16 C -0.559 4.559 17 H 0.078 0.922 18 C -0.143 4.143 19 N -0.534 5.534 20 Si 0.724 3.276 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.209 1.209 24 H 0.103 0.897 25 H 0.055 0.945 26 H 0.094 0.906 27 H 0.127 0.873 28 H 0.114 0.886 29 H 0.237 0.763 30 H 0.103 0.897 31 H 0.120 0.880 32 H 0.117 0.883 33 H 0.096 0.904 34 H 0.226 0.774 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.039 0.961 38 H 0.040 0.960 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.117 5.846 14.912 16.814 hybrid contribution 0.505 -0.407 -0.947 1.147 sum 5.622 5.439 13.965 16.007 Atomic orbital electron populations 1.22292 0.91020 1.04108 1.01258 1.20771 0.96898 0.94164 0.81380 0.91044 1.22585 0.92746 1.03149 1.01105 1.20683 0.88202 0.79335 0.81196 1.90751 1.84489 1.37411 1.30354 1.45956 1.10766 1.51085 1.29972 1.22275 1.01970 0.92899 0.86486 1.22026 0.81374 1.01570 0.98606 1.47114 1.05378 1.59426 1.25298 1.16196 0.84977 0.78609 0.80529 1.90982 1.16218 1.63801 1.74898 1.45955 1.11034 1.64430 1.18186 1.21603 0.90503 0.97358 0.88947 1.19323 0.96330 0.96280 0.90536 1.21082 0.93272 1.39641 1.01887 0.92157 1.24991 0.95344 0.95786 0.98161 1.69958 1.13862 1.45370 1.24165 0.86464 0.81640 0.78572 0.80934 1.19552 1.20947 1.20945 0.89697 0.94541 0.90606 0.87320 0.88645 0.76335 0.89745 0.88042 0.88332 0.90400 0.77354 0.92619 0.92815 0.96058 0.96019 0.92906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.66 7.44 37.16 0.28 -1.38 16 2 C 0.17 1.95 3.21 -67.96 -0.22 1.73 16 3 H 0.07 0.80 7.95 -51.93 -0.41 0.38 16 4 C -0.15 -1.57 4.99 -27.48 -0.14 -1.70 16 5 C 0.52 5.77 7.11 -11.25 -0.08 5.69 16 6 O -0.55 -8.27 17.91 5.55 0.10 -8.17 16 7 N -0.73 -5.83 5.30 -59.95 -0.32 -6.14 16 8 C 0.09 0.59 6.49 -3.67 -0.02 0.57 16 9 C 0.09 0.75 6.18 -4.16 -0.03 0.72 16 10 N -0.63 -7.44 2.77 -172.07 -0.48 -7.92 16 11 C 0.69 10.89 8.04 -86.92 -0.70 10.19 16 12 O -0.58 -10.81 11.41 5.29 0.06 -10.75 16 13 N -0.74 -11.88 5.45 -65.23 -0.36 -12.24 16 14 C 0.14 2.79 5.62 -4.04 -0.02 2.77 16 15 C 0.01 0.30 5.09 -27.89 -0.14 0.16 16 16 C -0.52 -13.99 9.11 -34.44 -0.31 -14.30 16 17 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 18 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 19 N -0.89 -25.41 13.29 55.43 0.74 -24.68 16 20 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 21 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 24 H 0.08 1.23 6.54 -51.93 -0.34 0.89 16 25 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.08 1.14 6.67 -51.93 -0.35 0.80 16 27 H 0.11 1.05 7.98 -51.93 -0.41 0.64 16 28 H 0.10 0.93 7.07 -51.93 -0.37 0.56 16 29 H 0.40 2.70 8.91 -40.82 -0.36 2.34 16 30 H 0.08 0.63 7.02 -51.93 -0.36 0.27 16 31 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.10 0.78 5.29 -51.93 -0.27 0.51 16 33 H 0.08 0.61 8.10 -51.93 -0.42 0.19 16 34 H 0.39 5.32 5.74 -40.82 -0.23 5.08 16 35 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 311.90 15.07 4.70 4.70 Total: -1.00 -32.65 311.90 -7.67 -40.33 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -5.62 Total: 3.03 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: -1.48 Total: 5.96 kcal Atomic # 7 Polarization: -50.56 SS G_CDS: -0.41 Total: -50.98 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: 0.16 Total: -18.92 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.65 -7.67 -40.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612380229.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.932 kcal (2) G-P(sol) polarization free energy of solvation -32.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds