Wall clock time and date at job start Mon Mar 30 2020 01:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 H 1.08996 * 109.45938 * 2 1 4 4 C 1.53304 * 109.45138 * 119.97267 * 2 1 3 5 5 C 1.51195 * 108.61708 * 200.09847 * 4 2 1 6 6 O 1.21286 * 119.76933 * 108.78005 * 5 4 2 7 7 N 1.33629 * 120.46139 * 288.75218 * 5 4 2 8 8 C 1.46972 * 120.58075 * 359.67992 * 7 5 4 9 9 C 1.53225 * 108.80210 * 72.03986 * 8 7 5 10 10 N 1.46076 * 109.67564 * 278.33616 * 9 8 7 11 11 C 1.34777 * 118.72586 * 243.88051 * 10 9 8 12 12 O 1.21588 * 119.99434 * 173.95412 * 11 10 9 13 13 N 1.34774 * 120.00211 * 353.94955 * 11 10 9 14 14 C 1.46505 * 119.99888 * 185.07737 * 13 11 10 15 15 C 1.52993 * 109.47120 * 180.02562 * 14 13 11 16 16 C 1.50696 * 109.47205 * 180.02562 * 15 14 13 17 17 H 1.07997 * 120.00334 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00144 * 180.02562 * 16 15 14 19 19 N 1.31514 * 120.00157 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00134 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47055 * 359.97438 * 20 18 16 22 22 H 1.48505 * 109.47089 * 119.99689 * 20 18 16 23 23 H 1.48504 * 109.47233 * 239.99633 * 20 18 16 24 24 H 1.09001 * 109.46876 * 185.30945 * 1 2 3 25 25 H 1.08998 * 109.47063 * 305.31375 * 1 2 3 26 26 H 1.09001 * 109.46532 * 65.31028 * 1 2 3 27 27 H 1.09005 * 109.61990 * 319.83814 * 4 2 1 28 28 H 1.09000 * 109.61654 * 80.35911 * 4 2 1 29 29 H 0.96996 * 119.69064 * 179.69871 * 7 5 4 30 30 H 1.08999 * 109.62602 * 312.22011 * 8 7 5 31 31 H 1.08997 * 109.54712 * 191.81053 * 8 7 5 32 32 H 1.09000 * 109.42704 * 158.28671 * 9 8 7 33 33 H 1.08997 * 109.42720 * 38.38610 * 9 8 7 34 34 H 0.97002 * 120.00181 * 5.07876 * 13 11 10 35 35 H 1.08996 * 109.46602 * 300.00289 * 14 13 11 36 36 H 1.09002 * 109.46930 * 60.00346 * 14 13 11 37 37 H 1.09006 * 109.47027 * 300.00217 * 15 14 13 38 38 H 1.08998 * 109.47372 * 59.99756 * 15 14 13 39 39 H 0.97005 * 120.00643 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0406 -0.7222 1.2522 5 6 3.4701 -0.2992 1.5043 6 8 3.7277 0.4228 2.4443 7 7 4.4519 -0.7156 0.6990 8 6 4.1610 -1.5969 -0.4406 9 6 3.4375 -0.7854 -1.5203 10 7 2.0170 -0.6886 -1.1936 11 6 1.1210 -1.2567 -2.0249 12 8 -0.0560 -1.2865 -1.7213 13 7 1.5296 -1.7915 -3.1925 14 6 0.5446 -2.3087 -4.1458 15 6 1.2666 -2.8563 -5.3785 16 6 0.2535 -3.3878 -6.3593 17 1 -0.8000 -3.3402 -6.1265 18 6 0.6715 -3.9358 -7.5534 19 7 1.9544 -3.9943 -7.8367 20 14 -0.5844 -4.5952 -8.7689 21 1 -1.9508 -4.4133 -8.2165 22 1 -0.4663 -3.8571 -10.0520 23 1 -0.3343 -6.0400 -9.0042 24 1 -0.3633 -1.0233 0.0951 25 1 -0.3633 0.5940 0.8386 26 1 -0.3632 0.4293 -0.9338 27 1 1.4226 -0.4515 2.1084 28 1 2.0003 -1.8000 1.0950 29 1 5.3644 -0.4339 0.8686 30 1 3.5249 -2.4196 -0.1142 31 1 5.0936 -1.9915 -0.8438 32 1 3.5549 -1.2795 -2.4848 33 1 3.8670 0.2151 -1.5707 34 1 2.4758 -1.8340 -3.4018 35 1 -0.0300 -3.1075 -3.6769 36 1 -0.1279 -1.5049 -4.4454 37 1 1.8416 -2.0577 -5.8474 38 1 1.9390 -3.6601 -5.0786 39 1 2.2486 -4.3795 -8.6770 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000612380229.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:09 Heat of formation + Delta-G solvation = -65.378656 kcal Electronic energy + Delta-G solvation = -21121.674760 eV Core-core repulsion = 17871.284227 eV Total energy + Delta-G solvation = -3250.390533 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.07331 -40.54282 -37.74801 -36.94141 -35.54406 -35.05153 -33.60967 -31.17091 -29.45855 -28.89747 -26.67462 -24.50056 -23.90418 -22.60985 -21.15519 -20.84372 -19.03264 -18.44198 -18.23828 -17.76008 -17.29175 -16.75601 -16.45179 -15.99231 -15.83203 -15.19518 -15.04670 -14.78064 -14.26289 -14.06846 -14.03027 -13.66670 -13.51128 -13.23398 -13.08093 -12.93903 -12.79720 -12.49286 -12.42745 -12.29962 -12.11699 -11.56543 -11.35704 -10.96848 -10.57354 -10.44145 -10.13925 -9.93972 -9.48934 -8.21583 -6.30719 1.42663 1.44412 1.49836 1.56239 1.63300 2.16375 2.29401 2.42652 2.94060 3.13819 3.44029 3.82481 3.90590 4.00329 4.06561 4.21405 4.23818 4.50889 4.55467 4.58789 4.63473 4.76036 4.85214 4.92986 4.96227 5.14836 5.32727 5.38191 5.58105 5.64941 5.70180 5.81984 5.84851 5.91344 6.17410 6.21478 6.82865 7.02522 7.17032 7.38593 7.63105 8.90242 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.038180 B = 0.003714 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.194667 B = 7536.823659 C = 8132.462065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.173 3.827 3 H 0.079 0.921 4 C -0.146 4.146 5 C 0.519 3.481 6 O -0.595 6.595 7 N -0.711 5.711 8 C 0.094 3.906 9 C 0.082 3.918 10 N -0.624 5.624 11 C 0.693 3.307 12 O -0.613 6.613 13 N -0.734 5.734 14 C 0.161 3.839 15 C 0.024 3.976 16 C -0.544 4.544 17 H 0.057 0.943 18 C 0.009 3.991 19 N -0.925 5.925 20 Si 0.961 3.039 21 H -0.266 1.266 22 H -0.278 1.278 23 H -0.278 1.278 24 H 0.065 0.935 25 H 0.056 0.944 26 H 0.049 0.951 27 H 0.113 0.887 28 H 0.101 0.899 29 H 0.410 0.590 30 H 0.081 0.919 31 H 0.139 0.861 32 H 0.106 0.894 33 H 0.090 0.910 34 H 0.403 0.597 35 H 0.044 0.956 36 H 0.041 0.959 37 H 0.008 0.992 38 H 0.011 0.989 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.752 5.418 14.534 16.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.069 3.931 3 H 0.097 0.903 4 C -0.187 4.187 5 C 0.306 3.694 6 O -0.476 6.476 7 N -0.362 5.362 8 C -0.031 4.031 9 C -0.041 4.041 10 N -0.362 5.362 11 C 0.395 3.605 12 O -0.494 6.494 13 N -0.393 5.393 14 C 0.037 3.963 15 C -0.014 4.014 16 C -0.582 4.582 17 H 0.076 0.924 18 C -0.190 4.190 19 N -0.565 5.565 20 Si 0.786 3.214 21 H -0.191 1.191 22 H -0.204 1.204 23 H -0.203 1.203 24 H 0.084 0.916 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.131 0.869 28 H 0.120 0.880 29 H 0.247 0.753 30 H 0.099 0.901 31 H 0.157 0.843 32 H 0.124 0.876 33 H 0.108 0.892 34 H 0.242 0.758 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.027 0.973 38 H 0.029 0.971 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.974 5.662 15.044 17.148 hybrid contribution 0.296 -0.327 -0.972 1.067 sum 6.269 5.334 14.072 16.303 Atomic orbital electron populations 1.22095 0.92117 1.02974 1.00645 1.20787 0.95987 0.94641 0.81641 0.90345 1.22481 0.92484 1.03268 1.00447 1.20774 0.88854 0.78834 0.80936 1.90739 1.85099 1.39471 1.32295 1.45904 1.10720 1.50199 1.29384 1.22382 1.03517 0.91938 0.85275 1.22309 0.79321 1.02859 0.99633 1.47133 1.06318 1.58209 1.24519 1.16302 0.85018 0.78567 0.80578 1.90986 1.17919 1.64918 1.75563 1.45626 1.11024 1.64694 1.17921 1.21037 0.90493 0.96461 0.88349 1.19123 0.95562 0.95351 0.91323 1.21498 0.93852 1.39919 1.02951 0.92432 1.25804 0.97204 0.96014 0.99957 1.70047 1.15480 1.46106 1.24860 0.85457 0.79344 0.78036 0.78569 1.19068 1.20396 1.20323 0.91594 0.92522 0.93220 0.86850 0.88026 0.75267 0.90073 0.84335 0.87636 0.89165 0.75807 0.93748 0.94046 0.97339 0.97093 0.92616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.06 7.44 71.99 0.54 -2.52 16 2 C 0.17 3.70 3.21 45.16 0.14 3.84 16 3 H 0.08 1.62 7.95 -2.39 -0.02 1.60 16 4 C -0.15 -2.72 4.99 30.11 0.15 -2.57 16 5 C 0.52 10.60 7.11 87.99 0.63 11.23 16 6 O -0.59 -17.17 17.91 -3.05 -0.05 -17.22 16 7 N -0.71 -9.48 5.30 -462.62 -2.45 -11.93 16 8 C 0.09 0.93 6.49 86.36 0.56 1.49 16 9 C 0.08 1.16 6.18 86.53 0.54 1.70 16 10 N -0.62 -13.72 2.77 -816.58 -2.26 -15.98 16 11 C 0.69 21.30 8.04 179.06 1.44 22.74 16 12 O -0.61 -23.03 11.41 -3.99 -0.05 -23.07 16 13 N -0.73 -23.14 5.45 -478.54 -2.61 -25.75 16 14 C 0.16 6.52 5.62 86.38 0.49 7.01 16 15 C 0.02 1.14 5.09 29.84 0.15 1.29 16 16 C -0.54 -29.37 9.11 25.60 0.23 -29.13 16 17 H 0.06 3.07 7.74 -2.91 -0.02 3.04 16 18 C 0.01 0.49 5.46 84.65 0.46 0.95 16 19 N -0.93 -52.46 13.29 21.45 0.28 -52.18 16 20 Si 0.96 42.56 29.54 68.60 2.03 44.58 16 21 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 22 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 23 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 24 H 0.07 1.92 6.54 -2.39 -0.02 1.91 16 25 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.05 1.51 6.67 -2.39 -0.02 1.50 16 27 H 0.11 2.05 7.98 -2.38 -0.02 2.03 16 28 H 0.10 1.79 7.07 -2.39 -0.02 1.78 16 29 H 0.41 4.35 8.91 -92.71 -0.83 3.53 16 30 H 0.08 0.96 7.02 -2.39 -0.02 0.95 16 31 H 0.14 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.11 1.39 5.29 -2.39 -0.01 1.37 16 33 H 0.09 1.13 8.10 -2.39 -0.02 1.12 16 34 H 0.40 10.46 5.74 -92.71 -0.53 9.93 16 35 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 38 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.26 14.12 8.31 -92.70 -0.77 13.35 16 Total: -1.00 -70.59 311.90 -0.07 -70.65 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -0.28 Total: 14.87 kcal Atomic # 6 Polarization: 10.71 SS G_CDS: 5.32 Total: 16.04 kcal Atomic # 7 Polarization: -98.81 SS G_CDS: -7.04 Total: -105.85 kcal Atomic # 8 Polarization: -40.20 SS G_CDS: -0.10 Total: -40.30 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.58 kcal Total: -70.59 -0.07 -70.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000612380229.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.275 kcal (2) G-P(sol) polarization free energy of solvation -70.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds