Wall clock time and date at job start Mon Mar 30 2020 01:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47013 * 2 1 4 4 C 1.53000 * 109.47178 * 239.99904 * 2 1 3 5 5 C 1.50696 * 109.47132 * 65.52926 * 4 2 1 6 6 H 1.08000 * 120.00013 * 5.08055 * 5 4 2 7 7 C 1.37876 * 120.00119 * 185.07770 * 5 4 2 8 8 N 1.31515 * 120.00304 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 119.99817 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.47005 * 90.00199 * 9 7 5 11 11 H 1.48499 * 109.47412 * 209.99745 * 9 7 5 12 12 H 1.48493 * 109.47402 * 330.00276 * 9 7 5 13 13 N 1.46895 * 109.46954 * 119.99710 * 2 1 3 14 14 C 1.47443 * 110.99969 * 178.38341 * 13 2 1 15 15 C 1.54321 * 107.23378 * 123.25610 * 14 13 2 16 16 H 1.08994 * 110.70875 * 263.90106 * 15 14 13 17 17 C 1.50706 * 110.85278 * 140.73668 * 15 14 13 18 18 N 1.34771 * 119.99949 * 66.31626 * 17 15 14 19 19 O 1.21286 * 119.99771 * 246.31246 * 17 15 14 20 20 C 1.55140 * 103.01908 * 22.28998 * 15 14 13 21 21 H 1.09000 * 110.99704 * 82.43423 * 20 15 14 22 22 C 1.50701 * 110.99137 * 206.25629 * 20 15 14 23 23 N 1.34772 * 120.00109 * 173.71691 * 22 20 15 24 24 O 1.21286 * 119.99643 * 353.71428 * 22 20 15 25 25 C 1.47848 * 111.00309 * 299.22799 * 13 2 1 26 26 H 1.08998 * 109.47067 * 60.00169 * 1 2 3 27 27 H 1.08991 * 109.47646 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46904 * 300.00316 * 1 2 3 29 29 H 1.08996 * 109.47199 * 185.53645 * 4 2 1 30 30 H 1.08998 * 109.46979 * 305.53280 * 4 2 1 31 31 H 0.97001 * 120.00029 * 179.97438 * 8 7 5 32 32 H 1.08999 * 109.89337 * 242.66015 * 14 13 2 33 33 H 1.09004 * 109.88897 * 3.85292 * 14 13 2 34 34 H 0.96998 * 120.00009 * 0.02562 * 18 17 15 35 35 H 0.97003 * 120.00099 * 179.97438 * 18 17 15 36 36 H 0.97005 * 120.00096 * 359.97438 * 23 22 20 37 37 H 0.97003 * 119.99750 * 179.97438 * 23 22 20 38 38 H 1.08999 * 110.37208 * 332.46427 * 25 13 2 39 39 H 1.08995 * 110.37505 * 94.80709 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6526 0.0637 -2.4759 6 1 1.1708 1.0247 -2.3721 7 6 1.9133 -0.4448 -3.7306 8 7 1.5756 0.2404 -4.8011 9 14 2.7461 -2.1072 -3.9100 10 1 1.7147 -3.1743 -3.9638 11 1 3.5454 -2.1280 -5.1614 12 1 3.6401 -2.3411 -2.7477 13 7 2.0196 -0.6924 1.1994 14 6 3.4930 -0.7458 1.2143 15 6 3.9612 -0.0864 2.5286 16 1 4.2186 0.9599 2.3646 17 6 5.1294 -0.8345 3.1177 18 7 6.3125 -0.8525 2.4725 19 8 5.0048 -1.4202 4.1724 20 6 2.7145 -0.2077 3.4439 21 1 2.6639 -1.1934 3.9065 22 6 2.7044 0.8779 4.4892 23 7 1.6388 1.0212 5.3017 24 8 3.6554 1.6225 4.5991 25 6 1.5608 -0.0113 2.4289 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0275 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 3.1254 -0.8079 -1.2010 30 1 1.5980 -1.7163 -1.3001 31 1 1.7594 -0.1172 -5.6839 32 1 3.8269 -1.7829 1.1803 33 1 3.8926 -0.1972 0.3613 34 1 6.4122 -0.3837 1.6292 35 1 7.0645 -1.3337 2.8518 36 1 0.8780 0.4258 5.2135 37 1 1.6325 1.7198 5.9747 38 1 1.4003 1.0497 2.2375 39 1 0.6461 -0.4735 2.7999 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000693441438.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:09 Heat of formation + Delta-G solvation = -82.818407 kcal Electronic energy + Delta-G solvation = -21447.047859 eV Core-core repulsion = 18195.901082 eV Total energy + Delta-G solvation = -3251.146777 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.73285 -38.91928 -38.10073 -34.42376 -33.84877 -33.58335 -32.26515 -29.60998 -29.44534 -27.29163 -24.06117 -23.13506 -21.92112 -20.74485 -19.83986 -19.05898 -17.81427 -17.59367 -16.97223 -16.76010 -16.41961 -15.37023 -15.12322 -14.77345 -14.38543 -14.11430 -13.69653 -13.52298 -13.29440 -13.23483 -12.55133 -12.47186 -11.79582 -11.61330 -11.52235 -11.08504 -11.06214 -10.96570 -10.88592 -10.17154 -10.08362 -9.88322 -9.84034 -9.80855 -9.72046 -9.63713 -9.21976 -8.57554 -8.01133 -6.08839 -4.07027 2.55544 2.64213 3.28440 3.33616 3.36397 3.39470 3.50860 4.19379 4.20918 4.41490 4.62816 4.86916 5.03644 5.20173 5.25248 5.33904 5.35557 5.66037 5.71034 5.83124 5.92980 5.95887 6.09643 6.18072 6.51837 6.63446 6.65762 6.72663 6.94542 7.03811 7.17321 7.17572 7.27697 7.36870 7.51707 7.78328 8.14906 8.23119 8.47705 8.95010 9.53489 11.04214 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.022269 B = 0.005413 C = 0.004656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.050932 B = 5171.564128 C = 6012.849864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.086 3.914 3 H 0.038 0.962 4 C -0.004 4.004 5 C -0.518 4.518 6 H 0.073 0.927 7 C 0.069 3.931 8 N -0.902 5.902 9 Si 0.879 3.121 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.266 1.266 13 N -0.521 5.521 14 C 0.053 3.947 15 C -0.118 4.118 16 H 0.113 0.887 17 C 0.540 3.460 18 N -0.854 5.854 19 O -0.546 6.546 20 C -0.105 4.105 21 H 0.124 0.876 22 C 0.535 3.465 23 N -0.854 5.854 24 O -0.544 6.544 25 C 0.055 3.945 26 H 0.073 0.927 27 H 0.055 0.945 28 H 0.033 0.967 29 H 0.015 0.985 30 H 0.022 0.978 31 H 0.263 0.737 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.404 0.596 35 H 0.400 0.600 36 H 0.403 0.597 37 H 0.400 0.600 38 H 0.052 0.948 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.330 -1.081 16.278 16.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.021 4.021 3 H 0.056 0.944 4 C -0.042 4.042 5 C -0.557 4.557 6 H 0.091 0.909 7 C -0.133 4.133 8 N -0.541 5.541 9 Si 0.706 3.294 10 H -0.202 1.202 11 H -0.215 1.215 12 H -0.191 1.191 13 N -0.245 5.245 14 C -0.075 4.075 15 C -0.140 4.140 16 H 0.131 0.869 17 C 0.324 3.676 18 N -0.416 5.416 19 O -0.423 6.423 20 C -0.127 4.127 21 H 0.142 0.858 22 C 0.319 3.681 23 N -0.417 5.417 24 O -0.420 6.420 25 C -0.073 4.073 26 H 0.092 0.908 27 H 0.074 0.926 28 H 0.052 0.948 29 H 0.033 0.967 30 H 0.040 0.960 31 H 0.073 0.927 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.232 0.768 35 H 0.230 0.770 36 H 0.231 0.769 37 H 0.230 0.770 38 H 0.070 0.930 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 2.551 -1.518 16.643 16.906 hybrid contribution 0.754 0.012 -0.288 0.807 sum 3.305 -1.506 16.356 16.754 Atomic orbital electron populations 1.21738 0.94536 1.01813 1.00787 1.21889 0.95706 0.95332 0.89129 0.94403 1.19671 0.95908 0.96447 0.92172 1.21047 1.39788 1.05916 0.88916 0.90928 1.24982 0.95178 0.97234 0.95859 1.69906 1.47796 1.38440 0.97967 0.86793 0.80183 0.84851 0.77523 1.20248 1.21547 1.19066 1.63763 1.07341 1.51325 1.02109 1.22853 0.89279 1.01167 0.94250 1.22479 0.92851 1.02052 0.96649 0.86902 1.20197 0.83985 0.79404 0.83978 1.43808 1.13360 1.57182 1.27296 1.90699 1.83806 1.45174 1.22640 1.22378 0.95843 0.99940 0.94569 0.85831 1.20317 0.81902 0.84333 0.81513 1.43810 1.20646 1.38447 1.38827 1.90723 1.34810 1.45575 1.70904 1.23003 0.96518 0.98169 0.89604 0.90844 0.92591 0.94786 0.96665 0.95975 0.92708 0.90239 0.90334 0.76758 0.76952 0.76890 0.76957 0.92961 0.89432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.27 8.93 37.16 0.33 -1.94 16 2 C 0.09 1.60 1.70 -67.72 -0.12 1.48 16 3 H 0.04 0.73 8.07 -51.93 -0.42 0.31 16 4 C 0.00 -0.10 3.44 -27.88 -0.10 -0.19 16 5 C -0.52 -13.88 8.87 -34.44 -0.31 -14.19 16 6 H 0.07 2.09 7.53 -52.49 -0.40 1.70 16 7 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 8 N -0.90 -26.93 13.96 55.43 0.77 -26.15 16 9 Si 0.88 21.06 27.37 -169.99 -4.65 16.41 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.27 -6.08 6.69 56.52 0.38 -5.71 16 13 N -0.52 -8.13 5.03 -223.29 -1.12 -9.25 16 14 C 0.05 0.77 5.65 -2.83 -0.02 0.75 16 15 C -0.12 -1.59 2.40 -89.94 -0.22 -1.80 16 16 H 0.11 1.55 7.50 -51.93 -0.39 1.16 16 17 C 0.54 7.53 7.28 -10.98 -0.08 7.45 16 18 N -0.85 -8.66 8.87 31.22 0.28 -8.38 16 19 O -0.55 -9.38 16.54 5.55 0.09 -9.29 16 20 C -0.11 -1.34 2.52 -89.63 -0.23 -1.56 16 21 H 0.12 1.60 7.41 -51.93 -0.38 1.21 16 22 C 0.53 6.96 7.43 -10.99 -0.08 6.88 16 23 N -0.85 -7.30 8.82 31.22 0.28 -7.02 16 24 O -0.54 -9.16 16.63 5.55 0.09 -9.06 16 25 C 0.06 0.70 4.85 -2.29 -0.01 0.69 16 26 H 0.07 1.42 7.10 -51.93 -0.37 1.05 16 27 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.03 0.49 7.13 -51.93 -0.37 0.12 16 29 H 0.02 0.34 5.66 -51.93 -0.29 0.04 16 30 H 0.02 0.51 7.29 -51.93 -0.38 0.13 16 31 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 32 H 0.08 1.16 7.82 -51.93 -0.41 0.75 16 33 H 0.08 1.19 6.27 -51.93 -0.33 0.86 16 34 H 0.40 3.24 8.83 -40.82 -0.36 2.88 16 35 H 0.40 3.46 8.93 -40.82 -0.36 3.09 16 36 H 0.40 2.32 8.83 -40.82 -0.36 1.96 16 37 H 0.40 2.91 8.93 -40.82 -0.36 2.55 16 38 H 0.05 0.68 7.53 -51.93 -0.39 0.29 16 39 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 316.07 15.07 4.76 4.76 Total: -1.00 -34.81 316.07 -5.99 -40.80 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -5.58 Total: 7.79 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: -0.91 Total: -0.61 kcal Atomic # 7 Polarization: -51.01 SS G_CDS: 0.20 Total: -50.81 kcal Atomic # 8 Polarization: -18.53 SS G_CDS: 0.18 Total: -18.35 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.65 Total: 16.41 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -34.81 -5.99 -40.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693441438.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.017 kcal (2) G-P(sol) polarization free energy of solvation -34.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds