Wall clock time and date at job start Mon Mar 30 2020 01:49:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47013 * 2 1 4 4 C 1.53000 * 109.47178 * 239.99904 * 2 1 3 5 5 C 1.50696 * 109.47132 * 65.52926 * 4 2 1 6 6 H 1.08000 * 120.00013 * 5.08055 * 5 4 2 7 7 C 1.37876 * 120.00119 * 185.07770 * 5 4 2 8 8 N 1.31515 * 120.00304 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 119.99817 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.47005 * 90.00199 * 9 7 5 11 11 H 1.48499 * 109.47412 * 209.99745 * 9 7 5 12 12 H 1.48493 * 109.47402 * 330.00276 * 9 7 5 13 13 N 1.46895 * 109.46954 * 119.99710 * 2 1 3 14 14 C 1.47443 * 110.99969 * 178.38341 * 13 2 1 15 15 C 1.54321 * 107.23378 * 123.25610 * 14 13 2 16 16 H 1.08994 * 110.70875 * 263.90106 * 15 14 13 17 17 C 1.50706 * 110.85278 * 140.73668 * 15 14 13 18 18 N 1.34771 * 119.99949 * 66.31626 * 17 15 14 19 19 O 1.21286 * 119.99771 * 246.31246 * 17 15 14 20 20 C 1.55140 * 103.01908 * 22.28998 * 15 14 13 21 21 H 1.09000 * 110.99704 * 82.43423 * 20 15 14 22 22 C 1.50701 * 110.99137 * 206.25629 * 20 15 14 23 23 N 1.34772 * 120.00109 * 173.71691 * 22 20 15 24 24 O 1.21286 * 119.99643 * 353.71428 * 22 20 15 25 25 C 1.47848 * 111.00309 * 299.22799 * 13 2 1 26 26 H 1.08998 * 109.47067 * 60.00169 * 1 2 3 27 27 H 1.08991 * 109.47646 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46904 * 300.00316 * 1 2 3 29 29 H 1.08996 * 109.47199 * 185.53645 * 4 2 1 30 30 H 1.08998 * 109.46979 * 305.53280 * 4 2 1 31 31 H 0.97001 * 120.00029 * 179.97438 * 8 7 5 32 32 H 1.08999 * 109.89337 * 242.66015 * 14 13 2 33 33 H 1.09004 * 109.88897 * 3.85292 * 14 13 2 34 34 H 0.96998 * 120.00009 * 0.02562 * 18 17 15 35 35 H 0.97003 * 120.00099 * 179.97438 * 18 17 15 36 36 H 0.97005 * 120.00096 * 359.97438 * 23 22 20 37 37 H 0.97003 * 119.99750 * 179.97438 * 23 22 20 38 38 H 1.08999 * 110.37208 * 332.46427 * 25 13 2 39 39 H 1.08995 * 110.37505 * 94.80709 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6526 0.0637 -2.4759 6 1 1.1708 1.0247 -2.3721 7 6 1.9133 -0.4448 -3.7306 8 7 1.5756 0.2404 -4.8011 9 14 2.7461 -2.1072 -3.9100 10 1 1.7147 -3.1743 -3.9638 11 1 3.5454 -2.1280 -5.1614 12 1 3.6401 -2.3411 -2.7477 13 7 2.0196 -0.6924 1.1994 14 6 3.4930 -0.7458 1.2143 15 6 3.9612 -0.0864 2.5286 16 1 4.2186 0.9599 2.3646 17 6 5.1294 -0.8345 3.1177 18 7 6.3125 -0.8525 2.4725 19 8 5.0048 -1.4202 4.1724 20 6 2.7145 -0.2077 3.4439 21 1 2.6639 -1.1934 3.9065 22 6 2.7044 0.8779 4.4892 23 7 1.6388 1.0212 5.3017 24 8 3.6554 1.6225 4.5991 25 6 1.5608 -0.0113 2.4289 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0275 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 3.1254 -0.8079 -1.2010 30 1 1.5980 -1.7163 -1.3001 31 1 1.7594 -0.1172 -5.6839 32 1 3.8269 -1.7829 1.1803 33 1 3.8926 -0.1972 0.3613 34 1 6.4122 -0.3837 1.6292 35 1 7.0645 -1.3337 2.8518 36 1 0.8780 0.4258 5.2135 37 1 1.6325 1.7198 5.9747 38 1 1.4003 1.0497 2.2375 39 1 0.6461 -0.4735 2.7999 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000693441438.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:49:09 Heat of formation + Delta-G solvation = -114.697665 kcal Electronic energy + Delta-G solvation = -21448.430247 eV Core-core repulsion = 18195.901082 eV Total energy + Delta-G solvation = -3252.529166 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.81458 -39.96895 -39.33315 -35.95850 -34.81919 -34.61094 -34.08924 -31.07101 -30.56980 -28.85977 -25.53125 -24.33495 -23.37868 -21.76581 -20.99365 -20.38395 -19.13116 -18.68811 -18.50208 -17.66984 -17.50645 -16.49910 -16.46898 -16.18390 -15.73892 -15.58151 -14.93173 -14.82844 -14.58378 -14.46640 -14.23387 -13.72962 -13.40665 -12.99239 -12.84762 -12.64447 -12.51939 -12.28629 -12.10263 -11.86129 -11.67684 -11.44423 -11.16147 -11.05872 -11.00887 -10.70231 -10.68764 -10.67172 -9.26944 -8.23784 -6.26099 1.40060 1.41287 1.52544 1.54843 1.57397 2.40197 2.44203 2.54487 3.08586 3.12372 3.15149 3.53724 3.89931 4.10385 4.16920 4.27399 4.30073 4.33661 4.39308 4.58410 4.68829 4.83105 4.89851 4.99599 5.08919 5.20473 5.27963 5.42158 5.57547 5.69920 5.86728 5.87822 5.99772 6.15806 6.36141 6.36849 6.41769 6.81247 7.27628 7.30535 7.37837 8.92562 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.022269 B = 0.005413 C = 0.004656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.050932 B = 5171.564128 C = 6012.849864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.095 3.905 3 H 0.025 0.975 4 C -0.001 4.001 5 C -0.517 4.517 6 H 0.037 0.963 7 C 0.008 3.992 8 N -0.952 5.952 9 Si 0.944 3.056 10 H -0.271 1.271 11 H -0.289 1.289 12 H -0.245 1.245 13 N -0.523 5.523 14 C 0.055 3.945 15 C -0.114 4.114 16 H 0.109 0.891 17 C 0.536 3.464 18 N -0.836 5.836 19 O -0.582 6.582 20 C -0.099 4.099 21 H 0.126 0.874 22 C 0.532 3.468 23 N -0.831 5.831 24 O -0.588 6.588 25 C 0.059 3.941 26 H 0.043 0.957 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.022 0.978 30 H 0.020 0.980 31 H 0.264 0.736 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.416 0.584 35 H 0.410 0.590 36 H 0.419 0.581 37 H 0.409 0.591 38 H 0.052 0.948 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.452 -2.417 17.948 18.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.013 4.013 3 H 0.043 0.957 4 C -0.038 4.038 5 C -0.556 4.556 6 H 0.055 0.945 7 C -0.189 4.189 8 N -0.593 5.593 9 Si 0.768 3.232 10 H -0.197 1.197 11 H -0.215 1.215 12 H -0.168 1.168 13 N -0.248 5.248 14 C -0.074 4.074 15 C -0.136 4.136 16 H 0.127 0.873 17 C 0.321 3.679 18 N -0.399 5.399 19 O -0.462 6.462 20 C -0.121 4.121 21 H 0.144 0.856 22 C 0.316 3.684 23 N -0.395 5.395 24 O -0.468 6.468 25 C -0.069 4.069 26 H 0.062 0.938 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.040 0.960 30 H 0.039 0.961 31 H 0.073 0.927 32 H 0.100 0.900 33 H 0.089 0.911 34 H 0.246 0.754 35 H 0.241 0.759 36 H 0.251 0.749 37 H 0.241 0.759 38 H 0.070 0.930 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 2.654 -2.859 18.332 18.743 hybrid contribution 0.682 0.511 -0.772 1.150 sum 3.336 -2.348 17.560 18.028 Atomic orbital electron populations 1.21653 0.93672 1.02020 1.00995 1.21617 0.96377 0.94259 0.89030 0.95664 1.19582 0.96254 0.95877 0.92111 1.21345 1.38441 1.04909 0.90863 0.94516 1.25881 0.96153 1.01290 0.95533 1.70059 1.49923 1.40685 0.98614 0.85753 0.79458 0.79899 0.78091 1.19657 1.21509 1.16829 1.63728 1.07963 1.51087 1.01975 1.22815 0.88780 1.01267 0.94509 1.22397 0.93355 1.01554 0.96319 0.87343 1.20281 0.84878 0.79092 0.83684 1.43679 1.12606 1.56329 1.27305 1.90680 1.84514 1.46823 1.24152 1.22311 0.95324 0.99986 0.94454 0.85609 1.20372 0.82198 0.83879 0.81937 1.43621 1.19859 1.38399 1.37584 1.90708 1.36661 1.47165 1.72285 1.23109 0.97478 0.98222 0.88108 0.93804 0.92299 0.91449 0.96030 0.96124 0.92698 0.89953 0.91121 0.75379 0.75851 0.74943 0.75899 0.92999 0.86548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.18 8.93 71.98 0.64 -3.53 16 2 C 0.10 3.39 1.70 44.92 0.08 3.47 16 3 H 0.03 0.97 8.07 -2.39 -0.02 0.95 16 4 C 0.00 -0.03 3.44 29.85 0.10 0.08 16 5 C -0.52 -28.12 8.87 25.60 0.23 -27.89 16 6 H 0.04 2.20 7.53 -2.91 -0.02 2.18 16 7 C 0.01 0.45 5.47 84.65 0.46 0.92 16 8 N -0.95 -58.18 13.96 21.45 0.30 -57.88 16 9 Si 0.94 42.98 27.37 68.60 1.88 44.86 16 10 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 11 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 12 H -0.24 -10.21 6.69 99.48 0.67 -9.55 16 13 N -0.52 -15.11 5.03 -860.36 -4.33 -19.44 16 14 C 0.05 1.49 5.65 86.65 0.49 1.98 16 15 C -0.11 -2.90 2.40 -10.36 -0.02 -2.92 16 16 H 0.11 2.89 7.50 -2.39 -0.02 2.87 16 17 C 0.54 14.20 7.28 87.66 0.64 14.84 16 18 N -0.84 -15.53 8.87 -173.53 -1.54 -17.07 16 19 O -0.58 -19.28 16.54 -3.05 -0.05 -19.33 16 20 C -0.10 -2.29 2.52 -10.15 -0.03 -2.32 16 21 H 0.13 2.94 7.41 -2.39 -0.02 2.92 16 22 C 0.53 12.83 7.43 87.66 0.65 13.49 16 23 N -0.83 -11.96 8.82 -173.53 -1.53 -13.49 16 24 O -0.59 -19.26 16.63 -3.05 -0.05 -19.31 16 25 C 0.06 1.30 4.85 86.78 0.42 1.72 16 26 H 0.04 1.70 7.10 -2.39 -0.02 1.68 16 27 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 28 H 0.07 1.76 7.13 -2.38 -0.02 1.74 16 29 H 0.02 0.92 5.66 -2.39 -0.01 0.91 16 30 H 0.02 0.91 7.29 -2.39 -0.02 0.89 16 31 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 32 H 0.08 2.22 7.82 -2.39 -0.02 2.20 16 33 H 0.07 2.04 6.27 -2.38 -0.01 2.03 16 34 H 0.42 5.89 8.83 -92.71 -0.82 5.08 16 35 H 0.41 6.33 8.93 -92.71 -0.83 5.50 16 36 H 0.42 3.36 8.83 -92.70 -0.82 2.54 16 37 H 0.41 4.93 8.93 -92.71 -0.83 4.10 16 38 H 0.05 1.20 7.53 -2.39 -0.02 1.18 16 39 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -76.24 316.07 -3.88 -80.12 By element: Atomic # 1 Polarization: 23.94 SS G_CDS: -2.22 Total: 21.73 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: 3.66 Total: -0.17 kcal Atomic # 7 Polarization: -100.79 SS G_CDS: -7.10 Total: -107.89 kcal Atomic # 8 Polarization: -38.54 SS G_CDS: -0.10 Total: -38.64 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 1.88 Total: 44.86 kcal Total: -76.24 -3.88 -80.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000693441438.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.581 kcal (2) G-P(sol) polarization free energy of solvation -76.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds