Wall clock time and date at job start Mon Mar 30 2020 00:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 110.43412 * 2 1 4 4 C 1.34781 * 119.99511 * 302.53878 * 3 2 1 5 5 O 1.21584 * 119.99970 * 359.97438 * 4 3 2 6 6 N 1.34771 * 119.99489 * 180.02562 * 4 3 2 7 7 C 1.46505 * 119.99622 * 180.02562 * 6 4 3 8 8 C 1.52997 * 109.47212 * 179.97438 * 7 6 4 9 9 C 1.52992 * 109.47482 * 179.97438 * 8 7 6 10 10 C 1.50698 * 109.47592 * 179.97438 * 9 8 7 11 11 H 1.08003 * 120.00057 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00356 * 179.97438 * 10 9 8 13 13 N 1.31519 * 119.99989 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00117 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.47114 * 60.00582 * 14 12 10 16 16 H 1.48503 * 109.47134 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47402 * 300.00322 * 14 12 10 18 18 C 1.54635 * 110.48608 * 122.53567 * 2 1 3 19 19 C 1.54487 * 101.76418 * 94.01679 * 18 2 1 20 20 N 1.46757 * 105.47216 * 25.41325 * 19 18 2 21 21 C 1.34429 * 111.30450 * 342.98522 * 20 19 18 22 22 O 1.21279 * 124.94032 * 180.40739 * 21 20 19 23 23 H 1.08988 * 109.47193 * 59.30212 * 1 2 3 24 24 H 1.09002 * 109.47093 * 179.30493 * 1 2 3 25 25 H 1.09001 * 109.47224 * 299.30056 * 1 2 3 26 26 H 0.97003 * 120.00113 * 122.54127 * 3 2 1 27 27 H 0.96996 * 120.00772 * 359.97438 * 6 4 3 28 28 H 1.09002 * 109.47068 * 299.99729 * 7 6 4 29 29 H 1.09001 * 109.47372 * 59.99816 * 7 6 4 30 30 H 1.09002 * 109.47153 * 300.00008 * 8 7 6 31 31 H 1.08998 * 109.47533 * 59.99637 * 8 7 6 32 32 H 1.09002 * 109.47103 * 300.00247 * 9 8 7 33 33 H 1.09001 * 109.47066 * 60.00169 * 9 8 7 34 34 H 0.96996 * 119.99885 * 179.97438 * 13 12 10 35 35 H 1.08998 * 110.96740 * 212.13291 * 18 2 1 36 36 H 1.08994 * 110.97146 * 335.89687 * 18 2 1 37 37 H 1.08992 * 110.24417 * 144.41604 * 19 18 2 38 38 H 1.08998 * 110.23759 * 266.32764 * 19 18 2 39 39 H 0.97002 * 124.34900 * 162.96349 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0415 1.3729 0.0000 4 6 1.6884 2.2235 -0.9841 5 8 0.9458 1.8513 -1.8719 6 7 2.1593 3.4862 -0.9843 7 6 1.7751 4.4110 -2.0537 8 6 2.4412 5.7681 -1.8182 9 6 2.0405 6.7337 -2.9352 10 6 2.6961 8.0705 -2.7029 11 1 3.3351 8.2168 -1.8445 12 6 2.4811 9.1067 -3.5866 13 7 1.7033 8.9286 -4.6322 14 14 3.2932 10.7641 -3.2982 15 1 4.7689 10.5979 -3.2926 16 1 2.9043 11.7013 -4.3825 17 1 2.8516 11.3108 -1.9901 18 6 2.0712 -0.7791 1.2212 19 6 2.2807 -2.1897 0.6273 20 7 2.4803 -1.9829 -0.8119 21 6 2.0622 -0.7634 -1.1927 22 8 2.1055 -0.3372 -2.3273 23 1 -0.3633 0.5246 -0.8836 24 1 -0.3633 -1.0276 -0.0125 25 1 -0.3634 0.5029 0.8962 26 1 2.6343 1.6696 0.7082 27 1 2.7520 3.7830 -0.2762 28 1 2.0974 4.0095 -3.0145 29 1 0.6920 4.5338 -2.0561 30 1 2.1186 6.1693 -0.8574 31 1 3.5243 5.6457 -1.8154 32 1 2.3635 6.3322 -3.8957 33 1 0.9574 6.8563 -2.9383 34 1 1.5518 9.6577 -5.2537 35 1 3.0151 -0.3569 1.5661 36 1 1.3374 -0.8001 2.0269 37 1 3.1616 -2.6571 1.0670 38 1 1.3996 -2.8072 0.8024 39 1 2.8649 -2.6415 -1.4113 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892790461.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:25 Heat of formation + Delta-G solvation = -71.162506 kcal Electronic energy + Delta-G solvation = -20521.749269 eV Core-core repulsion = 17271.107930 eV Total energy + Delta-G solvation = -3250.641339 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.14161 -39.12874 -36.64495 -35.49674 -34.40981 -33.25025 -31.60697 -30.40694 -28.92596 -26.58352 -25.46533 -23.09255 -22.39474 -21.01937 -20.49015 -19.49029 -18.11326 -17.39667 -16.49229 -16.39128 -16.10830 -15.23763 -14.82775 -14.42955 -14.26731 -14.21516 -13.94640 -13.78155 -13.43672 -12.85868 -12.60503 -12.37389 -12.23088 -12.18851 -11.73494 -11.59186 -11.43972 -10.84541 -10.64262 -10.57462 -10.22321 -9.78793 -9.72559 -9.36280 -9.33099 -9.07995 -8.95274 -8.50629 -8.32240 -5.96944 -4.00039 2.36264 2.88138 3.12273 3.34975 3.39556 3.41533 3.53965 3.92090 4.09389 4.36240 4.45859 4.49376 4.56431 4.98077 5.03097 5.24426 5.38469 5.39508 5.43646 5.59235 5.80377 5.91612 6.17649 6.27652 6.36278 6.62395 6.64996 6.71710 6.78293 6.90084 7.11200 7.13409 7.69507 7.83544 8.02488 8.16523 8.25724 8.43349 8.93452 9.06632 9.63678 11.14382 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.050288 B = 0.002953 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.662114 B = 9479.409957 C = 9616.622768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.168 3.832 3 N -0.739 5.739 4 C 0.698 3.302 5 O -0.561 6.561 6 N -0.743 5.743 7 C 0.137 3.863 8 C -0.120 4.120 9 C 0.024 3.976 10 C -0.522 4.522 11 H 0.054 0.946 12 C 0.057 3.943 13 N -0.894 5.894 14 Si 0.893 3.107 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.277 1.277 18 C -0.137 4.137 19 C 0.106 3.894 20 N -0.741 5.741 21 C 0.506 3.494 22 O -0.484 6.484 23 H 0.093 0.907 24 H 0.063 0.937 25 H 0.068 0.932 26 H 0.396 0.604 27 H 0.391 0.609 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.019 0.981 33 H 0.019 0.981 34 H 0.261 0.739 35 H 0.089 0.911 36 H 0.100 0.900 37 H 0.081 0.919 38 H 0.074 0.926 39 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.430 -23.509 16.747 28.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.076 3.924 3 N -0.397 5.397 4 C 0.398 3.602 5 O -0.436 6.436 6 N -0.397 5.397 7 C 0.013 3.987 8 C -0.158 4.158 9 C -0.014 4.014 10 C -0.561 4.561 11 H 0.073 0.927 12 C -0.145 4.145 13 N -0.533 5.533 14 Si 0.721 3.279 15 H -0.203 1.203 16 H -0.213 1.213 17 H -0.203 1.203 18 C -0.175 4.175 19 C -0.019 4.019 20 N -0.400 5.400 21 C 0.288 3.712 22 O -0.354 6.354 23 H 0.112 0.888 24 H 0.082 0.918 25 H 0.087 0.913 26 H 0.231 0.769 27 H 0.224 0.776 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.038 0.962 33 H 0.037 0.963 34 H 0.071 0.929 35 H 0.108 0.892 36 H 0.119 0.881 37 H 0.100 0.900 38 H 0.092 0.908 39 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 0.602 -23.388 15.145 27.870 hybrid contribution 1.257 0.852 0.623 1.641 sum 1.859 -22.536 15.768 27.567 Atomic orbital electron populations 1.22112 0.91374 1.02730 1.05126 1.20674 0.96084 0.81754 0.93862 1.44997 1.54809 1.10494 1.29434 1.16003 0.81351 0.80831 0.82057 1.90943 1.39504 1.76207 1.36909 1.45352 1.53181 1.10667 1.30530 1.21481 0.99741 0.88565 0.88864 1.21880 0.99328 0.92963 1.01593 1.19020 0.97062 0.92629 0.92648 1.21178 1.29157 0.96280 1.09458 0.92731 1.25033 0.95336 0.98925 0.95187 1.69961 1.37422 1.32555 1.13346 0.86644 0.79795 0.83726 0.77724 1.20273 1.21287 1.20275 1.22980 1.03091 0.94496 0.96979 1.21977 1.02250 0.96953 0.80734 1.46217 1.65769 1.17620 1.10418 1.21126 0.77518 0.82226 0.90324 1.90865 1.52580 1.70764 1.21181 0.88785 0.91774 0.91317 0.76909 0.77614 0.91973 0.92035 0.92840 0.92864 0.96236 0.96252 0.92887 0.89239 0.88129 0.90028 0.90792 0.75206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.63 8.41 37.16 0.31 -1.32 16 2 C 0.17 1.72 0.89 -131.83 -0.12 1.60 16 3 N -0.74 -8.47 5.15 -52.42 -0.27 -8.74 16 4 C 0.70 11.51 7.83 -86.92 -0.68 10.83 16 5 O -0.56 -11.77 12.35 -16.36 -0.20 -11.98 16 6 N -0.74 -11.59 5.56 -65.22 -0.36 -11.96 16 7 C 0.14 2.61 5.67 -4.04 -0.02 2.58 16 8 C -0.12 -2.44 5.27 -26.74 -0.14 -2.58 16 9 C 0.02 0.63 4.97 -27.89 -0.14 0.49 16 10 C -0.52 -14.91 9.11 -34.44 -0.31 -15.23 16 11 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 12 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 13 N -0.89 -27.39 13.29 55.43 0.74 -26.65 16 14 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 16 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 18 C -0.14 -0.67 6.33 -25.09 -0.16 -0.83 16 19 C 0.11 0.46 7.78 -3.12 -0.02 0.43 16 20 N -0.74 -6.13 6.24 -59.21 -0.37 -6.50 16 21 C 0.51 6.70 7.29 -10.86 -0.08 6.62 16 22 O -0.48 -9.31 15.64 -16.09 -0.25 -9.56 16 23 H 0.09 1.41 6.05 -51.94 -0.31 1.10 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.40 3.12 8.34 -40.82 -0.34 2.78 16 27 H 0.39 4.81 8.49 -40.82 -0.35 4.46 16 28 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 29 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 35 H 0.09 0.33 7.85 -51.93 -0.41 -0.08 16 36 H 0.10 0.29 7.90 -51.93 -0.41 -0.12 16 37 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 38 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 39 H 0.41 2.86 8.96 -40.82 -0.37 2.49 16 LS Contribution 323.17 15.07 4.87 4.87 Total: -1.00 -38.32 323.17 -8.28 -46.61 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -5.95 Total: 2.93 kcal Atomic # 6 Polarization: 5.61 SS G_CDS: -1.46 Total: 4.15 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: -0.27 Total: -53.84 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: -0.45 Total: -21.53 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -38.32 -8.28 -46.61 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892790461.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.557 kcal (2) G-P(sol) polarization free energy of solvation -38.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds