Wall clock time and date at job start Mon Mar 30 2020 00:49:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46511 * 110.43024 * 2 1 4 4 C 1.34779 * 119.99679 * 57.45922 * 3 2 1 5 5 O 1.21584 * 120.00260 * 0.02562 * 4 3 2 6 6 N 1.34780 * 119.99393 * 179.97438 * 4 3 2 7 7 C 1.46502 * 119.99389 * 179.97438 * 6 4 3 8 8 C 1.53000 * 109.46718 * 179.97438 * 7 6 4 9 9 C 1.53001 * 109.47160 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.47158 * 180.02562 * 9 8 7 11 11 H 1.08000 * 120.00073 * 0.02562 * 10 9 8 12 12 C 1.37879 * 119.99933 * 180.02562 * 10 9 8 13 13 N 1.31515 * 120.00056 * 359.97438 * 12 10 9 14 14 Si 1.86792 * 120.00128 * 180.02562 * 12 10 9 15 15 H 1.48503 * 109.47009 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47727 * 119.99849 * 14 12 10 17 17 H 1.48499 * 109.47392 * 240.00027 * 14 12 10 18 18 C 1.54625 * 110.48984 * 237.46240 * 2 1 3 19 19 C 1.54481 * 101.79703 * 266.09826 * 18 2 1 20 20 N 1.46825 * 105.44388 * 334.62720 * 19 18 2 21 21 C 1.34414 * 111.31785 * 16.96546 * 20 19 18 22 22 O 1.21279 * 124.94846 * 179.65872 * 21 20 19 23 23 H 1.09006 * 109.46732 * 182.54364 * 1 2 3 24 24 H 1.08996 * 109.47321 * 302.53606 * 1 2 3 25 25 H 1.09000 * 109.47371 * 62.54290 * 1 2 3 26 26 H 0.96996 * 119.99920 * 237.45751 * 3 2 1 27 27 H 0.96996 * 120.00206 * 359.97438 * 6 4 3 28 28 H 1.08995 * 109.47271 * 300.00020 * 7 6 4 29 29 H 1.08999 * 109.47114 * 60.00582 * 7 6 4 30 30 H 1.09001 * 109.47826 * 300.00488 * 8 7 6 31 31 H 1.09004 * 109.46908 * 60.00241 * 8 7 6 32 32 H 1.08995 * 109.47254 * 300.00602 * 9 8 7 33 33 H 1.09004 * 109.46809 * 60.00430 * 9 8 7 34 34 H 0.96998 * 120.00258 * 180.02562 * 13 12 10 35 35 H 1.09002 * 110.96933 * 24.23417 * 18 2 1 36 36 H 1.09003 * 110.97286 * 147.95983 * 18 2 1 37 37 H 1.08998 * 110.24929 * 93.60353 * 19 18 2 38 38 H 1.09000 * 110.24296 * 215.60139 * 19 18 2 39 39 H 0.96996 * 124.33530 * 196.99833 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0414 1.3730 0.0000 4 6 1.6882 2.2236 0.9840 5 8 0.9457 1.8514 1.8719 6 7 2.1592 3.4864 0.9842 7 6 1.7748 4.4112 2.0535 8 6 2.4420 5.7679 1.8186 9 6 2.0401 6.7339 2.9349 10 6 2.6967 8.0705 2.7032 11 1 3.3363 8.2164 1.8452 12 6 2.4810 9.1070 3.5864 13 7 1.7018 8.9294 4.6309 14 14 3.2942 10.7638 3.2988 15 1 4.1152 10.7043 2.0628 16 1 2.2498 11.8089 3.1500 17 1 4.1649 11.0953 4.4552 18 6 2.0712 -0.7790 -1.2211 19 6 2.2782 -2.1907 -0.6287 20 7 2.4758 -1.9851 0.8116 21 6 2.0595 -0.7652 1.1928 22 8 2.1028 -0.3396 2.3276 23 1 -0.3633 -1.0267 0.0456 24 1 -0.3634 0.5527 0.8663 25 1 -0.3634 0.4738 -0.9119 26 1 2.6341 1.6697 -0.7081 27 1 2.7525 3.7829 0.2765 28 1 0.6918 4.5340 2.0559 29 1 2.0972 4.0098 3.0143 30 1 3.5250 5.6448 1.8164 31 1 2.1201 6.1695 0.8577 32 1 0.9572 6.8570 2.9366 33 1 2.3617 6.3325 3.8960 34 1 1.5496 9.6587 5.2521 35 1 1.3384 -0.7981 -2.0277 36 1 3.0160 -0.3580 -1.5650 37 1 1.3961 -2.8064 -0.8041 38 1 3.1592 -2.6586 -1.0680 39 1 2.8582 -2.6449 1.4110 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892790462.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:28 Heat of formation + Delta-G solvation = -71.176876 kcal Electronic energy + Delta-G solvation = -20521.109590 eV Core-core repulsion = 17270.467627 eV Total energy + Delta-G solvation = -3250.641963 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.14033 -39.13020 -36.64367 -35.49687 -34.40890 -33.25232 -31.60790 -30.40728 -28.92910 -26.58475 -25.46302 -23.09529 -22.39494 -21.02049 -20.49220 -19.49108 -18.11415 -17.39587 -16.49432 -16.38917 -16.11199 -15.24012 -14.83044 -14.42235 -14.26691 -14.21388 -13.94613 -13.78371 -13.44047 -12.85961 -12.60393 -12.37446 -12.24166 -12.19576 -11.72672 -11.59262 -11.44021 -10.88359 -10.64976 -10.52138 -10.22277 -9.79520 -9.72711 -9.36557 -9.33380 -9.05679 -8.95274 -8.50663 -8.33044 -5.97409 -4.00296 2.36285 2.88092 3.12143 3.32750 3.40014 3.43620 3.53717 3.92168 4.09186 4.36137 4.45811 4.49313 4.56430 4.98072 5.02898 5.24531 5.38254 5.39526 5.43858 5.58787 5.80309 5.91551 6.17708 6.27598 6.36274 6.62304 6.64930 6.71634 6.78295 6.90052 7.11099 7.13341 7.69852 7.83336 8.02249 8.16555 8.25618 8.43182 8.93300 9.06817 9.63556 11.13982 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.050304 B = 0.002953 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.482163 B = 9481.111270 C = 9618.791586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.168 3.832 3 N -0.739 5.739 4 C 0.698 3.302 5 O -0.561 6.561 6 N -0.743 5.743 7 C 0.137 3.863 8 C -0.119 4.119 9 C 0.023 3.977 10 C -0.521 4.521 11 H 0.055 0.945 12 C 0.056 3.944 13 N -0.893 5.893 14 Si 0.893 3.107 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.284 1.284 18 C -0.137 4.137 19 C 0.106 3.894 20 N -0.741 5.741 21 C 0.506 3.494 22 O -0.484 6.484 23 H 0.063 0.937 24 H 0.094 0.906 25 H 0.068 0.932 26 H 0.396 0.604 27 H 0.391 0.609 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.019 0.981 33 H 0.019 0.981 34 H 0.260 0.740 35 H 0.100 0.900 36 H 0.089 0.911 37 H 0.074 0.926 38 H 0.082 0.918 39 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.442 -23.525 -16.775 28.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.076 3.924 3 N -0.397 5.397 4 C 0.398 3.602 5 O -0.436 6.436 6 N -0.397 5.397 7 C 0.013 3.987 8 C -0.158 4.158 9 C -0.014 4.014 10 C -0.559 4.559 11 H 0.074 0.926 12 C -0.145 4.145 13 N -0.533 5.533 14 Si 0.721 3.279 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.176 4.176 19 C -0.019 4.019 20 N -0.400 5.400 21 C 0.288 3.712 22 O -0.354 6.354 23 H 0.082 0.918 24 H 0.113 0.887 25 H 0.087 0.913 26 H 0.231 0.769 27 H 0.224 0.776 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.038 0.962 33 H 0.038 0.962 34 H 0.070 0.930 35 H 0.119 0.881 36 H 0.108 0.892 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 0.620 -23.407 -15.183 27.907 hybrid contribution 1.241 0.853 -0.598 1.620 sum 1.861 -22.554 -15.781 27.589 Atomic orbital electron populations 1.22120 0.91391 1.02869 1.05011 1.20670 0.96086 0.81752 0.93864 1.44990 1.54803 1.10485 1.29433 1.16006 0.81354 0.80831 0.82051 1.90942 1.39505 1.76210 1.36906 1.45355 1.53148 1.10669 1.30559 1.21480 0.99736 0.88571 0.88865 1.21882 0.99320 0.92961 1.01596 1.19034 0.97072 0.92666 0.92664 1.21251 1.28950 0.96235 1.09465 0.92627 1.25038 0.95350 0.98953 0.95204 1.69980 1.37471 1.32351 1.13465 0.86530 0.79244 0.84078 0.78090 1.19785 1.21025 1.21032 1.22978 1.03101 0.94491 0.96980 1.21994 1.02255 0.96952 0.80703 1.46228 1.65885 1.17545 1.10376 1.21121 0.77498 0.82245 0.90329 1.90865 1.52521 1.70837 1.21178 0.91783 0.88735 0.91342 0.76905 0.77611 0.92027 0.91982 0.92857 0.92843 0.96240 0.96227 0.93005 0.88133 0.89240 0.90783 0.90006 0.75212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 8.43 37.16 0.31 -1.33 16 2 C 0.17 1.72 0.89 -131.82 -0.12 1.60 16 3 N -0.74 -8.46 5.15 -52.42 -0.27 -8.73 16 4 C 0.70 11.50 7.83 -86.91 -0.68 10.82 16 5 O -0.56 -11.77 12.34 -16.34 -0.20 -11.97 16 6 N -0.74 -11.58 5.56 -65.23 -0.36 -11.95 16 7 C 0.14 2.61 5.67 -4.04 -0.02 2.58 16 8 C -0.12 -2.44 5.27 -26.73 -0.14 -2.58 16 9 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 10 C -0.52 -14.85 9.11 -34.44 -0.31 -15.16 16 11 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 12 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 13 N -0.89 -27.36 13.29 55.43 0.74 -26.62 16 14 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 15 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 16 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 17 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 18 C -0.14 -0.67 6.33 -25.10 -0.16 -0.83 16 19 C 0.11 0.46 7.79 -3.09 -0.02 0.43 16 20 N -0.74 -6.13 6.24 -59.16 -0.37 -6.50 16 21 C 0.51 6.70 7.29 -10.86 -0.08 6.62 16 22 O -0.48 -9.31 15.65 -16.07 -0.25 -9.56 16 23 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.09 1.42 6.00 -51.93 -0.31 1.11 16 25 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.40 3.11 8.35 -40.82 -0.34 2.77 16 27 H 0.39 4.81 8.49 -40.82 -0.35 4.46 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 30 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 35 H 0.10 0.29 7.90 -51.93 -0.41 -0.13 16 36 H 0.09 0.33 7.85 -51.93 -0.41 -0.08 16 37 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 38 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 39 H 0.41 2.86 8.96 -40.82 -0.37 2.49 16 LS Contribution 323.15 15.07 4.87 4.87 Total: -1.00 -38.35 323.15 -8.28 -46.63 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -5.95 Total: 2.86 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: -1.46 Total: 4.16 kcal Atomic # 7 Polarization: -53.53 SS G_CDS: -0.27 Total: -53.79 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: -0.45 Total: -21.53 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -38.35 -8.28 -46.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892790462.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.545 kcal (2) G-P(sol) polarization free energy of solvation -38.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds