Wall clock time and date at job start Mon Mar 30 2020 01:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.17792 * 2 1 4 4 N 1.45648 * 109.21622 * 240.63935 * 2 1 3 5 5 C 1.33387 * 124.58949 * 261.54657 * 4 2 1 6 6 O 1.21285 * 118.48719 * 175.70434 * 5 4 2 7 7 C 1.50800 * 123.03579 * 355.52051 * 5 4 2 8 8 H 1.08991 * 109.72836 * 253.21175 * 7 5 4 9 9 C 1.53000 * 109.60356 * 132.73093 * 7 5 4 10 10 N 1.47053 * 108.69405 * 13.00925 * 7 5 4 11 11 C 1.34779 * 121.35291 * 137.20771 * 10 7 5 12 12 O 1.21590 * 119.99806 * 5.28819 * 11 10 7 13 13 N 1.34777 * 119.99971 * 185.28870 * 11 10 7 14 14 C 1.46502 * 119.99791 * 174.99601 * 13 11 10 15 15 C 1.50697 * 109.46827 * 179.97438 * 14 13 11 16 16 H 1.08001 * 120.00100 * 0.02562 * 15 14 13 17 17 C 1.37883 * 119.99983 * 179.97438 * 15 14 13 18 18 N 1.31508 * 119.99889 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99896 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47202 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.46697 * 120.00196 * 19 17 15 22 22 H 1.48497 * 109.47308 * 239.99862 * 19 17 15 23 23 C 1.47264 * 117.29343 * 316.93742 * 10 7 5 24 24 H 1.08996 * 109.72177 * 181.42281 * 23 10 7 25 25 C 1.53001 * 109.71796 * 302.03572 * 23 10 7 26 26 H 1.08998 * 109.46717 * 300.64472 * 1 2 3 27 27 H 1.08998 * 109.47135 * 60.64065 * 1 2 3 28 28 H 1.09001 * 109.47105 * 180.64433 * 1 2 3 29 29 H 0.97002 * 117.70852 * 81.56578 * 4 2 1 30 30 H 1.08995 * 109.47495 * 290.60253 * 9 7 5 31 31 H 1.09002 * 109.46875 * 50.60434 * 9 7 5 32 32 H 1.09003 * 109.47012 * 170.59708 * 9 7 5 33 33 H 0.96995 * 119.99925 * 354.99239 * 13 11 10 34 34 H 1.08993 * 109.47051 * 59.99838 * 14 13 11 35 35 H 1.09002 * 109.46894 * 299.99545 * 14 13 11 36 36 H 0.96997 * 119.99985 * 179.97438 * 18 17 15 37 37 H 1.08998 * 109.46956 * 60.00649 * 25 23 10 38 38 H 1.09002 * 109.46671 * 179.97438 * 25 23 10 39 39 H 1.08995 * 109.47229 * 299.99674 * 25 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8881 1.0295 0.0000 4 7 2.0094 -0.6743 -1.1987 5 6 2.4110 -1.9455 -1.2430 6 8 2.7149 -2.4190 -2.3174 7 6 2.5086 -2.8200 -0.0184 8 1 3.5558 -2.9695 0.2445 9 6 1.8503 -4.1722 -0.2994 10 7 1.8121 -2.1546 1.0927 11 6 1.0080 -2.8416 1.9282 12 8 0.9214 -4.0505 1.8314 13 7 0.2999 -2.1885 2.8708 14 6 -0.6563 -2.9194 3.7062 15 6 -1.3102 -1.9659 4.6728 16 1 -1.0409 -0.9200 4.6652 17 6 -2.2531 -2.4285 5.5661 18 7 -2.5814 -3.7019 5.5750 19 14 -3.0632 -1.2466 6.7646 20 1 -2.5233 0.1205 6.5530 21 1 -4.5307 -1.2395 6.5371 22 1 -2.7802 -1.6813 8.1561 23 6 2.0336 -0.7083 1.2591 24 1 1.4824 -0.3493 2.1283 25 6 3.5271 -0.4328 1.4452 26 1 -0.3633 0.5238 0.8841 27 1 -0.3633 0.5038 -0.8957 28 1 -0.3633 -1.0276 0.0116 29 1 2.0389 -0.1631 -2.0225 30 1 0.7720 -4.0399 -0.3883 31 1 2.2440 -4.5817 -1.2297 32 1 2.0659 -4.8585 0.5196 33 1 0.4234 -1.2346 2.9961 34 1 -0.1328 -3.6973 4.2619 35 1 -1.4178 -3.3748 3.0732 36 1 -3.2445 -4.0274 6.2036 37 1 4.0730 -0.7833 0.5693 38 1 3.6864 0.6385 1.5675 39 1 3.8857 -0.9573 2.3308 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922229933.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:16 Heat of formation + Delta-G solvation = -50.958596 kcal Electronic energy + Delta-G solvation = -21986.449479 eV Core-core repulsion = 18736.684247 eV Total energy + Delta-G solvation = -3249.765232 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.13439 -38.95433 -37.20392 -34.85485 -34.14101 -32.67250 -31.77894 -30.05061 -29.55970 -26.91774 -24.76443 -23.99552 -22.68605 -22.13444 -20.25997 -18.54029 -18.21828 -17.21950 -16.61674 -15.97483 -15.82604 -15.05388 -14.94373 -14.58303 -14.34162 -13.88663 -13.74011 -13.33503 -13.12829 -12.66657 -12.53083 -12.29095 -12.07499 -12.03882 -11.77895 -11.63409 -11.53870 -11.33944 -11.07026 -10.94903 -10.93633 -10.30047 -10.17954 -9.39280 -9.28039 -8.91283 -8.76807 -8.50716 -7.81924 -6.19177 -4.26005 2.52149 2.79152 3.17364 3.21048 3.28633 3.30902 3.76517 4.21653 4.30261 4.33111 4.65896 4.74421 4.81737 5.06568 5.17306 5.17347 5.27939 5.32720 5.46346 5.60428 5.63186 5.71292 5.92959 6.01941 6.16444 6.27366 6.35768 6.66479 6.80004 6.98108 7.16968 7.45420 7.47651 7.52787 7.77631 7.97089 8.09328 8.69153 8.82508 9.24484 9.42522 10.91012 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.027295 B = 0.005207 C = 0.004781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1025.600443 B = 5375.809209 C = 5855.512515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.128 3.872 3 H 0.095 0.905 4 N -0.711 5.711 5 C 0.517 3.483 6 O -0.549 6.549 7 C 0.156 3.844 8 H 0.097 0.903 9 C -0.133 4.133 10 N -0.635 5.635 11 C 0.702 3.298 12 O -0.584 6.584 13 N -0.726 5.726 14 C 0.267 3.733 15 C -0.542 4.542 16 H 0.062 0.938 17 C 0.064 3.936 18 N -0.884 5.884 19 Si 0.903 3.097 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.282 1.282 23 C 0.126 3.874 24 H 0.108 0.892 25 C -0.163 4.163 26 H 0.074 0.926 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.396 0.604 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.098 0.902 33 H 0.383 0.617 34 H 0.026 0.974 35 H 0.024 0.976 36 H 0.265 0.735 37 H 0.058 0.942 38 H 0.071 0.929 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.873 10.475 -9.359 17.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.022 3.978 3 H 0.113 0.887 4 N -0.362 5.362 5 C 0.303 3.697 6 O -0.427 6.427 7 C 0.049 3.951 8 H 0.114 0.886 9 C -0.191 4.191 10 N -0.377 5.377 11 C 0.404 3.596 12 O -0.462 6.462 13 N -0.380 5.380 14 C 0.146 3.854 15 C -0.580 4.580 16 H 0.080 0.920 17 C -0.139 4.139 18 N -0.521 5.521 19 Si 0.730 3.270 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.208 1.208 23 C 0.021 3.979 24 H 0.126 0.874 25 C -0.221 4.221 26 H 0.093 0.907 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.231 0.769 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.117 0.883 33 H 0.218 0.782 34 H 0.044 0.956 35 H 0.042 0.958 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.762 9.010 -9.634 16.410 hybrid contribution -0.513 1.477 0.521 1.649 sum 9.249 10.488 -9.112 16.690 Atomic orbital electron populations 1.22286 0.94153 1.03670 1.02682 1.21393 0.95202 0.96360 0.84858 0.88711 1.45452 1.65902 1.12202 1.12658 1.20669 0.75716 0.82186 0.91166 1.90746 1.50144 1.71985 1.29780 1.21104 0.98168 0.93523 0.82308 0.88578 1.22068 1.00923 0.93662 1.02421 1.47594 1.50755 1.07571 1.31759 1.15967 0.78725 0.85285 0.79601 1.90884 1.69624 1.11834 1.73860 1.45934 1.43469 1.11755 1.36857 1.19004 0.85985 0.92078 0.88370 1.21223 1.23450 0.94908 1.18417 0.92005 1.24934 0.96391 0.95318 0.97292 1.69980 1.32023 1.13437 1.36700 0.86379 0.79176 0.80737 0.80697 1.19677 1.20831 1.20804 1.21550 0.97353 0.81495 0.97489 0.87411 1.22148 0.94714 1.02388 1.02854 0.90726 0.92133 0.91605 0.76871 0.91952 0.92406 0.88341 0.78226 0.95576 0.95767 0.92482 0.92335 0.90981 0.91229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.76 9.38 37.16 0.35 -1.41 16 2 C 0.13 1.16 3.24 -68.39 -0.22 0.94 16 3 H 0.09 0.57 8.08 -51.93 -0.42 0.16 16 4 N -0.71 -7.54 4.90 -54.65 -0.27 -7.81 16 5 C 0.52 7.22 6.82 -11.55 -0.08 7.15 16 6 O -0.55 -9.31 17.02 5.55 0.09 -9.22 16 7 C 0.16 2.26 2.90 -68.73 -0.20 2.07 16 8 H 0.10 1.26 7.82 -51.93 -0.41 0.85 16 9 C -0.13 -2.19 7.62 37.16 0.28 -1.91 16 10 N -0.64 -9.33 2.50 -164.51 -0.41 -9.75 16 11 C 0.70 13.66 8.01 -86.92 -0.70 12.96 16 12 O -0.58 -13.47 12.53 5.29 0.07 -13.40 16 13 N -0.73 -14.56 5.47 -66.41 -0.36 -14.92 16 14 C 0.27 6.81 5.43 -5.19 -0.03 6.79 16 15 C -0.54 -14.12 9.28 -34.44 -0.32 -14.44 16 16 H 0.06 1.50 7.60 -52.49 -0.40 1.10 16 17 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 18 N -0.88 -25.50 13.29 55.43 0.74 -24.77 16 19 Si 0.90 20.25 29.54 -169.99 -5.02 15.23 16 20 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 C 0.13 1.35 2.61 -67.52 -0.18 1.18 16 24 H 0.11 1.13 5.60 -51.93 -0.29 0.84 16 25 C -0.16 -1.42 9.03 37.16 0.34 -1.09 16 26 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.91 7.97 -51.93 -0.41 0.50 16 29 H 0.40 3.59 8.80 -40.82 -0.36 3.23 16 30 H 0.06 1.15 7.41 -51.93 -0.39 0.77 16 31 H 0.06 0.89 7.59 -51.93 -0.39 0.50 16 32 H 0.10 1.77 6.35 -51.93 -0.33 1.44 16 33 H 0.38 6.54 5.86 -40.82 -0.24 6.30 16 34 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 37 H 0.06 0.53 6.81 -51.93 -0.35 0.18 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 313.38 15.07 4.72 4.72 Total: -1.00 -32.40 313.38 -6.95 -39.35 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -5.66 Total: 6.68 kcal Atomic # 6 Polarization: 14.72 SS G_CDS: -0.85 Total: 13.87 kcal Atomic # 7 Polarization: -56.93 SS G_CDS: -0.31 Total: -57.24 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: 0.16 Total: -22.62 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -32.40 -6.95 -39.35 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922229933.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.604 kcal (2) G-P(sol) polarization free energy of solvation -32.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds