Wall clock time and date at job start Mon Mar 30 2020 01:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.38514 * 2 1 4 4 C 1.50249 * 109.38816 * 240.20994 * 2 1 3 5 5 O 1.21281 * 118.62503 * 42.64176 * 4 2 1 6 6 N 1.33714 * 122.75316 * 222.66210 * 4 2 1 7 7 C 1.46006 * 122.92841 * 1.66768 * 6 4 2 8 8 H 1.08997 * 109.28444 * 101.95077 * 7 6 4 9 9 C 1.52992 * 109.38011 * 221.66380 * 7 6 4 10 10 C 1.52988 * 110.04031 * 341.83857 * 7 6 4 11 11 H 1.08995 * 109.59683 * 170.06526 * 10 7 6 12 12 C 1.53001 * 109.59180 * 290.36547 * 10 7 6 13 13 N 1.46829 * 109.42687 * 119.52540 * 2 1 3 14 14 C 1.46899 * 111.11091 * 293.75157 * 13 2 1 15 15 C 1.50705 * 109.47247 * 170.58784 * 14 13 2 16 16 O 1.21296 * 119.99732 * 354.06663 * 15 14 13 17 17 N 1.34774 * 119.99937 * 174.06025 * 15 14 13 18 18 C 1.37103 * 119.99716 * 180.02562 * 17 15 14 19 19 H 1.08001 * 119.99920 * 0.02562 * 18 17 15 20 20 C 1.38949 * 120.00045 * 180.02562 * 18 17 15 21 21 N 1.31415 * 119.99877 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00426 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.46918 * 359.97438 * 22 20 18 24 24 H 1.48492 * 109.47661 * 119.99566 * 22 20 18 25 25 H 1.48507 * 109.47040 * 239.99958 * 22 20 18 26 26 H 1.08996 * 109.47205 * 185.59403 * 1 2 3 27 27 H 1.09004 * 109.47077 * 305.59517 * 1 2 3 28 28 H 1.08998 * 109.47193 * 65.59051 * 1 2 3 29 29 H 0.97003 * 118.53620 * 181.68330 * 6 4 2 30 30 H 1.08998 * 109.47765 * 180.58266 * 9 7 6 31 31 H 1.09002 * 109.46916 * 300.57922 * 9 7 6 32 32 H 1.08997 * 109.47380 * 60.57471 * 9 7 6 33 33 H 1.09000 * 109.47078 * 59.69646 * 12 10 7 34 34 H 1.09001 * 109.47051 * 179.69901 * 12 10 7 35 35 H 1.09004 * 109.47577 * 299.69984 * 12 10 7 36 36 H 1.08994 * 109.47159 * 290.58681 * 14 13 2 37 37 H 1.09001 * 109.47090 * 50.58860 * 14 13 2 38 38 H 0.96997 * 119.99889 * 0.02562 * 17 15 14 39 39 H 0.96997 * 120.00008 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8918 1.0283 0.0000 4 6 2.0288 -0.7041 -1.2300 5 8 1.4830 -0.4797 -2.2895 6 7 3.0490 -1.5682 -1.2054 7 6 3.7495 -1.9343 0.0223 8 1 3.4037 -2.9127 0.3559 9 6 5.2538 -1.9934 -0.2499 10 6 3.4714 -0.8986 1.1134 11 1 3.8475 -1.2642 2.0688 12 6 4.1648 0.4185 0.7592 13 7 2.0184 -0.6824 1.2049 14 6 1.6738 0.0727 2.4169 15 6 1.9821 -0.7619 3.6333 16 8 2.3412 -1.9132 3.5038 17 7 1.8588 -0.2289 4.8651 18 6 2.1398 -0.9881 5.9717 19 1 2.4603 -2.0129 5.8563 20 6 2.0123 -0.4388 7.2416 21 7 1.6228 0.8084 7.3820 22 14 2.3958 -1.4728 8.7493 23 1 2.8112 -2.8335 8.3237 24 1 3.4952 -0.8372 9.5189 25 1 1.1851 -1.5699 9.6039 26 1 -0.3633 -1.0227 0.1002 27 1 -0.3633 0.5982 0.8357 28 1 -0.3633 0.4247 -0.9358 29 1 3.3367 -1.9694 -2.0403 30 1 5.7775 -2.2768 0.6630 31 1 5.4537 -2.7310 -1.0272 32 1 5.6021 -1.0146 -0.5798 33 1 3.7873 0.7823 -0.1965 34 1 3.9610 1.1564 1.5351 35 1 5.2401 0.2551 0.6866 36 1 2.2574 0.9926 2.4501 37 1 0.6115 0.3166 2.4034 38 1 1.5714 0.6916 4.9687 39 1 1.5341 1.1919 8.2685 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930829818.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:08 Heat of formation + Delta-G solvation = -60.964012 kcal Electronic energy + Delta-G solvation = -21767.667194 eV Core-core repulsion = 18517.468094 eV Total energy + Delta-G solvation = -3250.199100 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.90176 -38.47022 -37.22427 -35.50001 -33.92148 -32.04293 -31.29086 -30.24862 -28.96592 -26.80874 -24.77368 -24.68339 -22.58804 -21.52885 -19.20010 -18.21384 -17.87451 -17.22132 -16.75914 -15.86583 -15.57065 -15.51784 -14.67046 -14.55526 -13.93596 -13.83384 -13.69219 -13.54058 -13.11906 -12.65647 -12.48285 -12.27866 -12.13198 -11.97425 -11.85867 -11.54952 -11.39120 -11.18338 -11.11834 -10.88349 -10.62259 -10.37467 -10.26694 -9.75325 -9.52510 -9.04231 -8.51345 -8.07075 -7.98636 -6.45705 -3.86648 2.66232 3.13404 3.24651 3.28742 3.31132 3.73319 3.85311 4.17320 4.51564 4.65955 4.84300 5.00679 5.10920 5.18324 5.21062 5.25281 5.31120 5.40370 5.51710 5.58476 5.72721 5.78394 5.84139 5.94734 5.97042 6.00295 6.13786 6.20257 6.27141 6.32932 6.75406 7.05966 7.14465 7.33788 7.51646 8.01953 8.25383 8.56821 9.13963 9.49826 10.00784 10.71981 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.029679 B = 0.004842 C = 0.004455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.191060 B = 5781.791856 C = 6283.527654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.062 3.938 3 H 0.075 0.925 4 C 0.534 3.466 5 O -0.560 6.560 6 N -0.711 5.711 7 C 0.148 3.852 8 H 0.087 0.913 9 C -0.166 4.166 10 C 0.066 3.934 11 H 0.123 0.877 12 C -0.192 4.192 13 N -0.498 5.498 14 C 0.039 3.961 15 C 0.444 3.556 16 O -0.577 6.577 17 N -0.563 5.563 18 C -0.298 4.298 19 H 0.104 0.896 20 C 0.023 3.977 21 N -0.901 5.901 22 Si 0.929 3.071 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.281 1.281 26 H 0.068 0.932 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.395 0.605 30 H 0.076 0.924 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.052 0.948 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.052 0.948 37 H 0.096 0.904 38 H 0.392 0.608 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.232 0.497 -12.218 12.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.049 4.049 3 H 0.092 0.908 4 C 0.321 3.679 5 O -0.438 6.438 6 N -0.363 5.363 7 C 0.043 3.957 8 H 0.105 0.895 9 C -0.224 4.224 10 C -0.043 4.043 11 H 0.141 0.859 12 C -0.250 4.250 13 N -0.223 5.223 14 C -0.092 4.092 15 C 0.229 3.771 16 O -0.461 6.461 17 N -0.200 5.200 18 C -0.428 4.428 19 H 0.122 0.878 20 C -0.179 4.179 21 N -0.542 5.542 22 Si 0.756 3.244 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.207 1.207 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.231 0.769 30 H 0.095 0.905 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.070 0.930 37 H 0.114 0.886 38 H 0.225 0.775 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.844 -0.427 -12.430 13.018 hybrid contribution 0.550 0.805 0.671 1.184 sum 4.394 0.379 -11.759 12.559 Atomic orbital electron populations 1.21727 0.91453 1.03536 1.02530 1.21703 0.98064 0.96781 0.88355 0.90791 1.20010 0.79017 0.78677 0.90231 1.90716 1.57128 1.64513 1.31433 1.45738 1.34150 1.45221 1.11155 1.21083 0.91784 0.99357 0.83465 0.89458 1.22238 0.94736 1.02521 1.02894 1.22212 0.87442 0.93995 1.00632 0.85880 1.22584 1.02004 0.98951 1.01487 1.62245 1.12887 1.47076 1.00112 1.21990 1.02254 0.95098 0.89823 1.19639 0.85130 0.88484 0.83838 1.90509 1.51743 1.18007 1.85837 1.41876 1.59264 1.14458 1.04356 1.19739 1.42313 0.97460 0.83287 0.87813 1.25260 0.97231 0.96193 0.99199 1.69617 1.47152 1.12979 1.24466 0.85812 0.77986 0.79834 0.80784 1.19208 1.20786 1.20744 0.91303 0.91505 0.90970 0.76910 0.90470 0.92097 0.91702 0.92900 0.91908 0.91125 0.92963 0.88614 0.77500 0.91893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.80 8.83 37.16 0.33 -1.47 16 2 C 0.06 0.88 1.88 -69.12 -0.13 0.75 16 3 H 0.07 0.98 6.74 -51.93 -0.35 0.63 16 4 C 0.53 7.97 6.54 -11.68 -0.08 7.90 16 5 O -0.56 -9.78 16.95 5.56 0.09 -9.69 16 6 N -0.71 -8.93 5.06 -54.55 -0.28 -9.21 16 7 C 0.15 1.83 3.58 -68.21 -0.24 1.58 16 8 H 0.09 1.19 8.14 -51.93 -0.42 0.77 16 9 C -0.17 -1.54 8.81 37.15 0.33 -1.21 16 10 C 0.07 0.95 2.18 -67.56 -0.15 0.81 16 11 H 0.12 2.14 6.04 -51.93 -0.31 1.82 16 12 C -0.19 -2.34 7.68 37.16 0.29 -2.06 16 13 N -0.50 -7.87 4.12 -221.62 -0.91 -8.78 16 14 C 0.04 0.66 5.20 -4.97 -0.03 0.63 16 15 C 0.44 9.81 7.25 -10.98 -0.08 9.73 16 16 O -0.58 -14.51 14.35 5.54 0.08 -14.43 16 17 N -0.56 -13.57 5.29 -10.96 -0.06 -13.63 16 18 C -0.30 -7.99 9.68 -14.93 -0.14 -8.13 16 19 H 0.10 2.92 7.16 -52.49 -0.38 2.54 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 21 N -0.90 -23.86 13.05 55.50 0.72 -23.13 16 22 Si 0.93 20.46 29.55 -169.99 -5.02 15.44 16 23 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 24 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 25 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 26 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.07 0.80 6.62 -51.93 -0.34 0.46 16 28 H 0.07 0.94 7.63 -51.93 -0.40 0.54 16 29 H 0.40 4.29 8.74 -40.82 -0.36 3.93 16 30 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.58 6.32 -51.93 -0.33 0.25 16 33 H 0.05 0.64 5.76 -51.93 -0.30 0.34 16 34 H 0.06 0.80 6.70 -51.93 -0.35 0.45 16 35 H 0.07 0.75 6.34 -51.93 -0.33 0.42 16 36 H 0.05 0.79 6.54 -51.93 -0.34 0.45 16 37 H 0.10 1.48 6.22 -51.93 -0.32 1.15 16 38 H 0.39 9.09 7.90 -40.82 -0.32 8.77 16 39 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 LS Contribution 306.40 15.07 4.62 4.62 Total: -1.00 -30.85 306.40 -6.01 -36.86 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: -5.25 Total: 12.92 kcal Atomic # 6 Polarization: 9.02 SS G_CDS: 0.00 Total: 9.02 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: -0.52 Total: -54.74 kcal Atomic # 8 Polarization: -24.29 SS G_CDS: 0.17 Total: -24.12 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -30.85 -6.01 -36.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930829818.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.106 kcal (2) G-P(sol) polarization free energy of solvation -30.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds