Wall clock time and date at job start Mon Mar 30 2020 01:41:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 109.38514 * 2 1 4 4 C 1.50249 * 109.38816 * 240.20994 * 2 1 3 5 5 O 1.21281 * 118.62503 * 42.64176 * 4 2 1 6 6 N 1.33714 * 122.75316 * 222.66210 * 4 2 1 7 7 C 1.46006 * 122.92841 * 1.66768 * 6 4 2 8 8 H 1.08997 * 109.28444 * 101.95077 * 7 6 4 9 9 C 1.52992 * 109.38011 * 221.66380 * 7 6 4 10 10 C 1.52988 * 110.04031 * 341.83857 * 7 6 4 11 11 H 1.08995 * 109.59683 * 170.06526 * 10 7 6 12 12 C 1.53001 * 109.59180 * 290.36547 * 10 7 6 13 13 N 1.46829 * 109.42687 * 119.52540 * 2 1 3 14 14 C 1.46899 * 111.11091 * 293.75157 * 13 2 1 15 15 C 1.50705 * 109.47247 * 170.58784 * 14 13 2 16 16 O 1.21296 * 119.99732 * 354.06663 * 15 14 13 17 17 N 1.34774 * 119.99937 * 174.06025 * 15 14 13 18 18 C 1.37103 * 119.99716 * 180.02562 * 17 15 14 19 19 H 1.08001 * 119.99920 * 0.02562 * 18 17 15 20 20 C 1.38949 * 120.00045 * 180.02562 * 18 17 15 21 21 N 1.31415 * 119.99877 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00426 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.46918 * 359.97438 * 22 20 18 24 24 H 1.48492 * 109.47661 * 119.99566 * 22 20 18 25 25 H 1.48507 * 109.47040 * 239.99958 * 22 20 18 26 26 H 1.08996 * 109.47205 * 185.59403 * 1 2 3 27 27 H 1.09004 * 109.47077 * 305.59517 * 1 2 3 28 28 H 1.08998 * 109.47193 * 65.59051 * 1 2 3 29 29 H 0.97003 * 118.53620 * 181.68330 * 6 4 2 30 30 H 1.08998 * 109.47765 * 180.58266 * 9 7 6 31 31 H 1.09002 * 109.46916 * 300.57922 * 9 7 6 32 32 H 1.08997 * 109.47380 * 60.57471 * 9 7 6 33 33 H 1.09000 * 109.47078 * 59.69646 * 12 10 7 34 34 H 1.09001 * 109.47051 * 179.69901 * 12 10 7 35 35 H 1.09004 * 109.47577 * 299.69984 * 12 10 7 36 36 H 1.08994 * 109.47159 * 290.58681 * 14 13 2 37 37 H 1.09001 * 109.47090 * 50.58860 * 14 13 2 38 38 H 0.96997 * 119.99889 * 0.02562 * 17 15 14 39 39 H 0.96997 * 120.00008 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8918 1.0283 0.0000 4 6 2.0288 -0.7041 -1.2300 5 8 1.4830 -0.4797 -2.2895 6 7 3.0490 -1.5682 -1.2054 7 6 3.7495 -1.9343 0.0223 8 1 3.4037 -2.9127 0.3559 9 6 5.2538 -1.9934 -0.2499 10 6 3.4714 -0.8986 1.1134 11 1 3.8475 -1.2642 2.0688 12 6 4.1648 0.4185 0.7592 13 7 2.0184 -0.6824 1.2049 14 6 1.6738 0.0727 2.4169 15 6 1.9821 -0.7619 3.6333 16 8 2.3412 -1.9132 3.5038 17 7 1.8588 -0.2289 4.8651 18 6 2.1398 -0.9881 5.9717 19 1 2.4603 -2.0129 5.8563 20 6 2.0123 -0.4388 7.2416 21 7 1.6228 0.8084 7.3820 22 14 2.3958 -1.4728 8.7493 23 1 2.8112 -2.8335 8.3237 24 1 3.4952 -0.8372 9.5189 25 1 1.1851 -1.5699 9.6039 26 1 -0.3633 -1.0227 0.1002 27 1 -0.3633 0.5982 0.8357 28 1 -0.3633 0.4247 -0.9358 29 1 3.3367 -1.9694 -2.0403 30 1 5.7775 -2.2768 0.6630 31 1 5.4537 -2.7310 -1.0272 32 1 5.6021 -1.0146 -0.5798 33 1 3.7873 0.7823 -0.1965 34 1 3.9610 1.1564 1.5351 35 1 5.2401 0.2551 0.6866 36 1 2.2574 0.9926 2.4501 37 1 0.6115 0.3166 2.4034 38 1 1.5714 0.6916 4.9687 39 1 1.5341 1.1919 8.2685 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930829818.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:41:08 Heat of formation + Delta-G solvation = -85.396116 kcal Electronic energy + Delta-G solvation = -21768.726650 eV Core-core repulsion = 18517.468094 eV Total energy + Delta-G solvation = -3251.258555 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.07216 -40.09802 -38.58108 -36.67276 -35.83513 -33.24100 -33.14321 -31.39665 -30.09204 -28.14042 -26.47763 -25.71871 -23.92398 -22.61018 -20.93165 -19.84501 -19.29575 -18.43926 -17.93428 -17.39929 -16.83720 -16.65330 -16.37598 -16.06850 -15.51310 -15.32912 -15.00673 -14.65459 -14.28026 -14.06815 -13.68840 -13.49577 -13.28286 -13.23366 -13.04720 -12.94985 -12.85657 -12.48317 -12.36413 -12.13024 -12.10962 -12.08729 -11.76642 -11.40008 -10.94666 -10.26827 -10.11271 -9.96079 -9.34079 -8.43359 -5.91164 1.38710 1.44652 1.49571 1.57931 2.08740 2.22569 2.28751 2.56157 3.23987 3.32317 3.42879 3.64376 3.89823 4.04645 4.10833 4.18160 4.28695 4.33220 4.40401 4.45116 4.55717 4.71168 4.78393 4.84668 4.91539 4.95946 5.01262 5.16285 5.22479 5.33242 5.45156 5.70582 5.78244 6.01490 6.07492 6.22833 6.63996 7.14522 7.17000 7.60716 8.15700 8.74260 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.029679 B = 0.004842 C = 0.004455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.191060 B = 5781.791856 C = 6283.527654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.064 3.936 3 H 0.091 0.909 4 C 0.531 3.469 5 O -0.588 6.588 6 N -0.699 5.699 7 C 0.152 3.848 8 H 0.070 0.930 9 C -0.158 4.158 10 C 0.062 3.938 11 H 0.091 0.909 12 C -0.183 4.183 13 N -0.515 5.515 14 C 0.051 3.949 15 C 0.446 3.554 16 O -0.610 6.610 17 N -0.574 5.574 18 C -0.327 4.327 19 H 0.081 0.919 20 C -0.012 4.012 21 N -0.921 5.921 22 Si 0.990 3.010 23 H -0.273 1.273 24 H -0.272 1.272 25 H -0.274 1.274 26 H 0.053 0.947 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.405 0.595 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.088 0.912 36 H 0.075 0.925 37 H 0.113 0.887 38 H 0.395 0.605 39 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.876 1.092 -12.736 13.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.047 4.047 3 H 0.108 0.892 4 C 0.318 3.682 5 O -0.468 6.468 6 N -0.350 5.350 7 C 0.047 3.953 8 H 0.088 0.912 9 C -0.216 4.216 10 C -0.046 4.046 11 H 0.109 0.891 12 C -0.241 4.241 13 N -0.241 5.241 14 C -0.079 4.079 15 C 0.234 3.766 16 O -0.495 6.495 17 N -0.212 5.212 18 C -0.456 4.456 19 H 0.099 0.901 20 C -0.212 4.212 21 N -0.563 5.563 22 Si 0.814 3.186 23 H -0.197 1.197 24 H -0.198 1.198 25 H -0.200 1.200 26 H 0.073 0.927 27 H 0.099 0.901 28 H 0.094 0.906 29 H 0.243 0.757 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.106 0.894 36 H 0.093 0.907 37 H 0.131 0.869 38 H 0.229 0.771 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 4.505 0.170 -12.959 13.721 hybrid contribution 0.358 0.568 0.780 1.029 sum 4.863 0.738 -12.179 13.135 Atomic orbital electron populations 1.21718 0.90947 1.02942 1.03381 1.21739 0.98465 0.97319 0.87158 0.89165 1.20137 0.79161 0.78924 0.89990 1.90707 1.58133 1.65706 1.32301 1.45660 1.33351 1.44332 1.11699 1.21047 0.93783 0.97732 0.82765 0.91169 1.22189 0.91991 1.03769 1.03644 1.22168 0.86909 0.95694 0.99861 0.89090 1.22501 1.02903 0.97299 1.01431 1.62202 1.14007 1.47590 1.00258 1.21844 1.03667 0.94650 0.87762 1.20545 0.82975 0.88445 0.84672 1.90488 1.52639 1.19873 1.86541 1.41924 1.60147 1.14488 1.04597 1.19673 1.43979 0.97085 0.84897 0.90144 1.25975 0.96693 0.97268 1.01256 1.69676 1.47397 1.13872 1.25326 0.84913 0.78122 0.78088 0.77491 1.19706 1.19762 1.19974 0.92747 0.90052 0.90555 0.75729 0.90399 0.90132 0.90732 0.92331 0.92322 0.89368 0.90734 0.86870 0.77095 0.91441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.33 8.83 71.98 0.64 -2.70 16 2 C 0.06 1.71 1.88 44.04 0.08 1.79 16 3 H 0.09 2.14 6.74 -2.38 -0.02 2.12 16 4 C 0.53 15.06 6.54 87.68 0.57 15.63 16 5 O -0.59 -19.79 16.95 -3.03 -0.05 -19.85 16 6 N -0.70 -16.45 5.06 -445.49 -2.26 -18.70 16 7 C 0.15 3.57 3.58 45.08 0.16 3.73 16 8 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 9 C -0.16 -2.60 8.81 71.98 0.63 -1.96 16 10 C 0.06 1.75 2.18 44.86 0.10 1.84 16 11 H 0.09 3.19 6.04 -2.39 -0.01 3.18 16 12 C -0.18 -4.08 7.68 71.98 0.55 -3.53 16 13 N -0.52 -15.74 4.12 -855.09 -3.52 -19.26 16 14 C 0.05 1.66 5.20 85.56 0.44 2.11 16 15 C 0.45 19.88 7.25 87.66 0.64 20.51 16 16 O -0.61 -31.39 14.35 -3.08 -0.04 -31.43 16 17 N -0.57 -28.00 5.29 -306.97 -1.62 -29.63 16 18 C -0.33 -17.82 9.68 84.04 0.81 -17.01 16 19 H 0.08 4.69 7.16 -2.91 -0.02 4.66 16 20 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 21 N -0.92 -48.49 13.05 21.66 0.28 -48.21 16 22 Si 0.99 41.85 29.55 68.60 2.03 43.88 16 23 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 24 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 25 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 26 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.08 1.78 6.62 -2.38 -0.02 1.77 16 28 H 0.08 1.87 7.63 -2.39 -0.02 1.85 16 29 H 0.41 8.04 8.74 -92.71 -0.81 7.23 16 30 H 0.08 1.30 8.14 -2.39 -0.02 1.29 16 31 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.07 1.11 6.32 -2.39 -0.02 1.09 16 33 H 0.06 1.25 5.76 -2.39 -0.01 1.24 16 34 H 0.06 1.36 6.70 -2.39 -0.02 1.34 16 35 H 0.09 1.65 6.34 -2.38 -0.02 1.64 16 36 H 0.07 2.11 6.54 -2.39 -0.02 2.09 16 37 H 0.11 3.28 6.22 -2.39 -0.01 3.27 16 38 H 0.40 18.42 7.90 -92.71 -0.73 17.68 16 39 H 0.28 13.64 8.31 -92.71 -0.77 12.87 16 Total: -1.00 -66.47 306.40 -0.53 -67.00 By element: Atomic # 1 Polarization: 36.39 SS G_CDS: -0.45 Total: 35.95 kcal Atomic # 6 Polarization: 15.15 SS G_CDS: 5.10 Total: 20.24 kcal Atomic # 7 Polarization: -108.68 SS G_CDS: -7.12 Total: -115.80 kcal Atomic # 8 Polarization: -51.18 SS G_CDS: -0.10 Total: -51.28 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 2.03 Total: 43.88 kcal Total: -66.47 -0.53 -67.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930829818.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.392 kcal (2) G-P(sol) polarization free energy of solvation -66.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds