Wall clock time and date at job start Mon Mar 30 2020 00:50:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.23022 * 2 1 4 4 C 1.53139 * 109.23165 * 240.61960 * 2 1 3 5 5 C 1.51487 * 108.37887 * 323.83389 * 4 2 1 6 6 O 1.21287 * 120.05087 * 110.01880 * 5 4 2 7 7 N 1.33632 * 119.89863 * 289.99947 * 5 4 2 8 8 C 1.47299 * 120.06596 * 359.71036 * 7 5 4 9 9 C 1.53065 * 108.53463 * 70.75615 * 8 7 5 10 10 N 1.45564 * 110.81481 * 274.20369 * 9 8 7 11 11 C 1.46894 * 110.99980 * 300.55936 * 10 9 8 12 12 C 1.50701 * 109.47298 * 294.02243 * 11 10 9 13 13 O 1.21296 * 119.99625 * 353.81371 * 12 11 10 14 14 N 1.34776 * 120.00428 * 173.81505 * 12 11 10 15 15 C 1.37101 * 120.00063 * 180.02562 * 14 12 11 16 16 H 1.07995 * 120.00130 * 359.97438 * 15 14 12 17 17 C 1.38950 * 119.99525 * 179.97438 * 15 14 12 18 18 N 1.31407 * 120.00373 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99604 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47245 * 60.00204 * 19 17 15 21 21 H 1.48504 * 109.47115 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47394 * 299.99996 * 19 17 15 23 23 H 1.09004 * 109.46867 * 300.57814 * 1 2 3 24 24 H 1.08990 * 109.47133 * 60.58025 * 1 2 3 25 25 H 1.08999 * 109.47161 * 180.58263 * 1 2 3 26 26 H 1.09001 * 109.47256 * 179.42220 * 3 2 1 27 27 H 1.08995 * 109.46941 * 299.42017 * 3 2 1 28 28 H 1.09005 * 109.46978 * 59.41915 * 3 2 1 29 29 H 1.09005 * 109.68569 * 83.55449 * 4 2 1 30 30 H 1.09002 * 109.68616 * 204.07008 * 4 2 1 31 31 H 0.96996 * 119.94935 * 179.76290 * 7 5 4 32 32 H 1.08998 * 109.67151 * 311.01951 * 8 7 5 33 33 H 1.08998 * 109.60114 * 190.44414 * 8 7 5 34 34 H 1.09001 * 109.19880 * 153.87340 * 9 8 7 35 35 H 1.09000 * 109.20327 * 34.53585 * 9 8 7 36 36 H 1.09003 * 109.47509 * 54.01691 * 11 10 9 37 37 H 1.08992 * 109.47241 * 174.02086 * 11 10 9 38 38 H 0.97001 * 119.99717 * 359.97438 * 14 12 11 39 39 H 0.97003 * 120.00306 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0340 1.4446 0.0000 4 6 2.0345 -0.7094 -1.2600 5 6 1.0960 -1.8574 -1.5698 6 8 0.3688 -1.8028 -2.5390 7 7 1.0708 -2.9306 -0.7740 8 6 1.9587 -3.0003 0.3993 9 6 1.4611 -2.0004 1.4460 10 7 2.0097 -0.6752 1.1973 11 6 3.4779 -0.6973 1.2368 12 6 3.9380 -1.0207 2.6349 13 8 3.1297 -1.1031 3.5355 14 7 5.2476 -1.2184 2.8846 15 6 5.6661 -1.5132 4.1565 16 1 4.9465 -1.5866 4.9584 17 6 7.0162 -1.7175 4.4137 18 7 7.8919 -1.6287 3.4379 19 14 7.5865 -2.1184 6.1468 20 1 6.9403 -3.3755 6.6022 21 1 9.0616 -2.2895 6.1554 22 1 7.2110 -1.0096 7.0605 23 1 -0.3633 0.5228 0.8848 24 1 -0.3633 0.5047 -0.8951 25 1 -0.3633 -1.0276 0.0104 26 1 3.1239 1.4493 0.0104 27 1 1.6770 1.9539 -0.8951 28 1 1.6600 1.9599 0.8848 29 1 2.0466 -0.0094 -2.0955 30 1 3.0402 -1.0928 -1.0877 31 1 0.4677 -3.6646 -0.9697 32 1 2.9767 -2.7456 0.1047 33 1 1.9363 -4.0074 0.8155 34 1 1.7687 -2.3356 2.4366 35 1 0.3730 -1.9513 1.4061 36 1 3.8486 -1.4562 0.5477 37 1 3.8640 0.2790 0.9440 38 1 5.8940 -1.1529 2.1643 39 1 8.8344 -1.7710 3.6176 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931204127.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:02 Heat of formation + Delta-G solvation = -52.349256 kcal Electronic energy + Delta-G solvation = -21970.924172 eV Core-core repulsion = 18721.098637 eV Total energy + Delta-G solvation = -3249.825536 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.05556 -38.56663 -37.30290 -35.18647 -34.01574 -32.61327 -31.28576 -29.30333 -28.25447 -27.24407 -26.30532 -24.23449 -22.93444 -20.21768 -19.36249 -18.59947 -17.84925 -17.30531 -16.75298 -16.39439 -15.65216 -15.35838 -14.83008 -14.37214 -13.98779 -13.84365 -13.67037 -13.33966 -13.21040 -12.67055 -12.35677 -12.21684 -12.03684 -11.98111 -11.73840 -11.51266 -11.36336 -11.15792 -11.08646 -10.86650 -10.52353 -10.47061 -10.24425 -9.79005 -9.50681 -9.38010 -8.47736 -8.00416 -7.72571 -6.45117 -3.86063 2.62257 3.17186 3.23778 3.27478 3.27514 3.78533 3.87019 4.18508 4.40852 4.75712 4.84702 4.93492 5.04872 5.07969 5.20604 5.25821 5.30849 5.38105 5.45587 5.62444 5.71046 5.79162 5.85140 5.91248 6.01763 6.04338 6.19571 6.23706 6.29695 6.41176 6.73762 7.14488 7.24679 7.51233 7.53596 8.02756 8.19933 8.58147 9.14840 9.50866 10.02559 10.72395 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.033063 B = 0.004732 C = 0.004610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.655143 B = 5915.191885 C = 6072.006274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.129 3.871 3 C -0.141 4.141 4 C -0.176 4.176 5 C 0.526 3.474 6 O -0.559 6.559 7 N -0.727 5.727 8 C 0.061 3.939 9 C 0.043 3.957 10 N -0.519 5.519 11 C 0.037 3.963 12 C 0.443 3.557 13 O -0.576 6.576 14 N -0.564 5.564 15 C -0.299 4.299 16 H 0.103 0.897 17 C 0.024 3.976 18 N -0.902 5.902 19 Si 0.929 3.071 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.274 1.274 23 H 0.069 0.931 24 H 0.062 0.938 25 H 0.057 0.943 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.101 0.899 30 H 0.092 0.908 31 H 0.398 0.602 32 H 0.081 0.919 33 H 0.092 0.908 34 H 0.114 0.886 35 H 0.079 0.921 36 H 0.050 0.950 37 H 0.096 0.904 38 H 0.391 0.609 39 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.491 0.514 -8.162 11.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.039 3.961 3 C -0.198 4.198 4 C -0.218 4.218 5 C 0.314 3.686 6 O -0.437 6.437 7 N -0.379 5.379 8 C -0.064 4.064 9 C -0.085 4.085 10 N -0.242 5.242 11 C -0.094 4.094 12 C 0.228 3.772 13 O -0.460 6.460 14 N -0.201 5.201 15 C -0.429 4.429 16 H 0.120 0.880 17 C -0.178 4.178 18 N -0.543 5.543 19 Si 0.757 3.243 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.199 1.199 23 H 0.088 0.912 24 H 0.081 0.919 25 H 0.076 0.924 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.090 0.910 29 H 0.119 0.881 30 H 0.110 0.890 31 H 0.233 0.767 32 H 0.099 0.901 33 H 0.111 0.889 34 H 0.132 0.868 35 H 0.097 0.903 36 H 0.068 0.932 37 H 0.114 0.886 38 H 0.224 0.776 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.226 0.899 -7.633 12.008 hybrid contribution 1.007 -1.051 -0.300 1.486 sum -8.219 -0.151 -7.933 11.424 Atomic orbital electron populations 1.22058 0.93515 1.02320 1.02576 1.20638 0.95587 0.94423 0.85498 1.21973 1.01535 0.93824 1.02492 1.22931 0.99756 0.97092 1.02069 1.20491 0.83161 0.83508 0.81469 1.90722 1.43480 1.80649 1.28884 1.46115 1.42641 1.20642 1.28496 1.22760 0.94522 1.02544 0.86586 1.22490 1.00234 0.85935 0.99889 1.59448 1.06786 1.21858 1.36077 1.22030 0.88108 1.02220 0.97030 1.19727 0.83305 0.84597 0.89532 1.90500 1.53049 1.56214 1.46247 1.41874 1.05781 1.61598 1.10820 1.19635 0.92282 1.44459 0.86522 0.87956 1.25243 0.95649 0.97462 0.99465 1.69596 1.02809 1.49776 1.32126 0.85939 0.77283 0.79188 0.81934 1.19942 1.21013 1.19892 0.91156 0.91868 0.92404 0.91913 0.92040 0.91030 0.88080 0.88995 0.76653 0.90139 0.88915 0.86807 0.90304 0.93230 0.88610 0.77570 0.91811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 7.25 37.16 0.27 -1.55 16 2 C 0.13 1.61 0.64 -132.24 -0.08 1.53 16 3 C -0.14 -1.60 8.15 37.16 0.30 -1.30 16 4 C -0.18 -2.14 4.73 -27.42 -0.13 -2.27 16 5 C 0.53 7.22 5.10 -11.11 -0.06 7.17 16 6 O -0.56 -9.50 17.93 5.55 0.10 -9.40 16 7 N -0.73 -8.45 5.01 -59.70 -0.30 -8.75 16 8 C 0.06 0.72 6.38 -3.57 -0.02 0.70 16 9 C 0.04 0.61 5.00 -4.51 -0.02 0.58 16 10 N -0.52 -7.68 3.84 -222.35 -0.85 -8.54 16 11 C 0.04 0.58 4.39 -4.98 -0.02 0.56 16 12 C 0.44 9.57 7.38 -10.99 -0.08 9.49 16 13 O -0.58 -14.37 14.18 5.54 0.08 -14.29 16 14 N -0.56 -13.37 5.29 -10.96 -0.06 -13.43 16 15 C -0.30 -7.95 9.68 -14.93 -0.14 -8.09 16 16 H 0.10 2.85 7.16 -52.49 -0.38 2.48 16 17 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 18 N -0.90 -23.69 13.05 55.50 0.72 -22.96 16 19 Si 0.93 20.39 29.55 -169.99 -5.02 15.36 16 20 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 21 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 22 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 23 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.06 0.75 4.90 -51.93 -0.25 0.49 16 26 H 0.06 0.70 6.05 -51.93 -0.31 0.39 16 27 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.10 1.15 7.88 -51.93 -0.41 0.74 16 30 H 0.09 1.07 5.29 -51.93 -0.27 0.80 16 31 H 0.40 4.07 8.92 -40.82 -0.36 3.70 16 32 H 0.08 1.00 4.76 -51.93 -0.25 0.75 16 33 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.11 1.95 6.05 -51.93 -0.31 1.63 16 35 H 0.08 1.06 6.07 -51.93 -0.32 0.74 16 36 H 0.05 0.71 4.63 -51.93 -0.24 0.47 16 37 H 0.10 1.41 5.58 -51.93 -0.29 1.12 16 38 H 0.39 8.91 7.90 -40.82 -0.32 8.59 16 39 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 298.55 15.07 4.50 4.50 Total: -1.00 -30.89 298.55 -5.89 -36.78 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: -4.97 Total: 13.38 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: -0.09 Total: 7.34 kcal Atomic # 7 Polarization: -53.19 SS G_CDS: -0.49 Total: -53.67 kcal Atomic # 8 Polarization: -23.87 SS G_CDS: 0.18 Total: -23.69 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -30.89 -5.89 -36.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931204127.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.568 kcal (2) G-P(sol) polarization free energy of solvation -30.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds