Wall clock time and date at job start Mon Mar 30 2020 00:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.23022 * 2 1 4 4 C 1.53139 * 109.23165 * 240.61960 * 2 1 3 5 5 C 1.51487 * 108.37887 * 323.83389 * 4 2 1 6 6 O 1.21287 * 120.05087 * 110.01880 * 5 4 2 7 7 N 1.33632 * 119.89863 * 289.99947 * 5 4 2 8 8 C 1.47299 * 120.06596 * 359.71036 * 7 5 4 9 9 C 1.53065 * 108.53463 * 70.75615 * 8 7 5 10 10 N 1.45564 * 110.81481 * 274.20369 * 9 8 7 11 11 C 1.46894 * 110.99980 * 300.55936 * 10 9 8 12 12 C 1.50701 * 109.47298 * 294.02243 * 11 10 9 13 13 O 1.21296 * 119.99625 * 353.81371 * 12 11 10 14 14 N 1.34776 * 120.00428 * 173.81505 * 12 11 10 15 15 C 1.37101 * 120.00063 * 180.02562 * 14 12 11 16 16 H 1.07995 * 120.00130 * 359.97438 * 15 14 12 17 17 C 1.38950 * 119.99525 * 179.97438 * 15 14 12 18 18 N 1.31407 * 120.00373 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99604 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47245 * 60.00204 * 19 17 15 21 21 H 1.48504 * 109.47115 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47394 * 299.99996 * 19 17 15 23 23 H 1.09004 * 109.46867 * 300.57814 * 1 2 3 24 24 H 1.08990 * 109.47133 * 60.58025 * 1 2 3 25 25 H 1.08999 * 109.47161 * 180.58263 * 1 2 3 26 26 H 1.09001 * 109.47256 * 179.42220 * 3 2 1 27 27 H 1.08995 * 109.46941 * 299.42017 * 3 2 1 28 28 H 1.09005 * 109.46978 * 59.41915 * 3 2 1 29 29 H 1.09005 * 109.68569 * 83.55449 * 4 2 1 30 30 H 1.09002 * 109.68616 * 204.07008 * 4 2 1 31 31 H 0.96996 * 119.94935 * 179.76290 * 7 5 4 32 32 H 1.08998 * 109.67151 * 311.01951 * 8 7 5 33 33 H 1.08998 * 109.60114 * 190.44414 * 8 7 5 34 34 H 1.09001 * 109.19880 * 153.87340 * 9 8 7 35 35 H 1.09000 * 109.20327 * 34.53585 * 9 8 7 36 36 H 1.09003 * 109.47509 * 54.01691 * 11 10 9 37 37 H 1.08992 * 109.47241 * 174.02086 * 11 10 9 38 38 H 0.97001 * 119.99717 * 359.97438 * 14 12 11 39 39 H 0.97003 * 120.00306 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0340 1.4446 0.0000 4 6 2.0345 -0.7094 -1.2600 5 6 1.0960 -1.8574 -1.5698 6 8 0.3688 -1.8028 -2.5390 7 7 1.0708 -2.9306 -0.7740 8 6 1.9587 -3.0003 0.3993 9 6 1.4611 -2.0004 1.4460 10 7 2.0097 -0.6752 1.1973 11 6 3.4779 -0.6973 1.2368 12 6 3.9380 -1.0207 2.6349 13 8 3.1297 -1.1031 3.5355 14 7 5.2476 -1.2184 2.8846 15 6 5.6661 -1.5132 4.1565 16 1 4.9465 -1.5866 4.9584 17 6 7.0162 -1.7175 4.4137 18 7 7.8919 -1.6287 3.4379 19 14 7.5865 -2.1184 6.1468 20 1 6.9403 -3.3755 6.6022 21 1 9.0616 -2.2895 6.1554 22 1 7.2110 -1.0096 7.0605 23 1 -0.3633 0.5228 0.8848 24 1 -0.3633 0.5047 -0.8951 25 1 -0.3633 -1.0276 0.0104 26 1 3.1239 1.4493 0.0104 27 1 1.6770 1.9539 -0.8951 28 1 1.6600 1.9599 0.8848 29 1 2.0466 -0.0094 -2.0955 30 1 3.0402 -1.0928 -1.0877 31 1 0.4677 -3.6646 -0.9697 32 1 2.9767 -2.7456 0.1047 33 1 1.9363 -4.0074 0.8155 34 1 1.7687 -2.3356 2.4366 35 1 0.3730 -1.9513 1.4061 36 1 3.8486 -1.4562 0.5477 37 1 3.8640 0.2790 0.9440 38 1 5.8940 -1.1529 2.1643 39 1 8.8344 -1.7710 3.6176 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000931204127.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:01 Heat of formation + Delta-G solvation = -76.837922 kcal Electronic energy + Delta-G solvation = -21971.986081 eV Core-core repulsion = 18721.098637 eV Total energy + Delta-G solvation = -3250.887444 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.16205 -40.07070 -38.70963 -36.21447 -35.88696 -33.81893 -33.19161 -30.52009 -29.22659 -28.23038 -27.78990 -25.88061 -24.04924 -21.42962 -20.83877 -19.97370 -19.50088 -18.37616 -17.88704 -17.81219 -16.83870 -16.70687 -16.36051 -15.85312 -15.58488 -15.30174 -14.91912 -14.52434 -14.41248 -13.83096 -13.62320 -13.49954 -13.37543 -13.09297 -12.94067 -12.88937 -12.75614 -12.41551 -12.37248 -12.14347 -12.09883 -12.07042 -11.57867 -11.38704 -10.89108 -10.45784 -10.21416 -9.92830 -8.92451 -8.40537 -5.88019 1.43135 1.45692 1.55154 1.55335 2.13266 2.29253 2.31526 2.67301 3.26839 3.38731 3.44442 3.79124 3.85045 3.99565 4.04412 4.16902 4.23172 4.32082 4.43036 4.50210 4.61489 4.70673 4.78654 4.85811 4.93274 4.97334 5.05270 5.13063 5.28176 5.39300 5.47487 5.77813 5.96623 6.12318 6.16730 6.44066 6.68312 7.17346 7.20634 7.65524 8.21420 8.76376 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.033063 B = 0.004732 C = 0.004610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.655143 B = 5915.191885 C = 6072.006274 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.131 3.869 3 C -0.140 4.140 4 C -0.172 4.172 5 C 0.525 3.475 6 O -0.593 6.593 7 N -0.715 5.715 8 C 0.070 3.930 9 C 0.046 3.954 10 N -0.534 5.534 11 C 0.050 3.950 12 C 0.446 3.554 13 O -0.611 6.611 14 N -0.575 5.575 15 C -0.327 4.327 16 H 0.080 0.920 17 C -0.011 4.011 18 N -0.921 5.921 19 Si 0.987 3.013 20 H -0.272 1.272 21 H -0.274 1.274 22 H -0.274 1.274 23 H 0.067 0.933 24 H 0.070 0.930 25 H 0.049 0.951 26 H 0.066 0.934 27 H 0.082 0.918 28 H 0.061 0.939 29 H 0.113 0.887 30 H 0.100 0.900 31 H 0.406 0.594 32 H 0.080 0.920 33 H 0.112 0.888 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.114 0.886 38 H 0.395 0.605 39 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.261 0.582 -8.999 12.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.042 3.958 3 C -0.197 4.197 4 C -0.214 4.214 5 C 0.313 3.687 6 O -0.475 6.475 7 N -0.366 5.366 8 C -0.055 4.055 9 C -0.082 4.082 10 N -0.257 5.257 11 C -0.080 4.080 12 C 0.233 3.767 13 O -0.497 6.497 14 N -0.213 5.213 15 C -0.457 4.457 16 H 0.098 0.902 17 C -0.211 4.211 18 N -0.563 5.563 19 Si 0.811 3.189 20 H -0.197 1.197 21 H -0.199 1.199 22 H -0.199 1.199 23 H 0.086 0.914 24 H 0.089 0.911 25 H 0.068 0.932 26 H 0.084 0.916 27 H 0.101 0.899 28 H 0.080 0.920 29 H 0.131 0.869 30 H 0.118 0.882 31 H 0.243 0.757 32 H 0.098 0.902 33 H 0.130 0.870 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.091 0.909 37 H 0.132 0.868 38 H 0.229 0.771 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.999 0.956 -8.477 12.400 hybrid contribution 0.837 -1.062 -0.034 1.352 sum -8.163 -0.106 -8.510 11.793 Atomic orbital electron populations 1.22018 0.93392 1.01846 1.02784 1.20683 0.95612 0.94876 0.84651 1.21983 1.01722 0.92893 1.03116 1.22926 0.99612 0.96737 1.02085 1.20766 0.82887 0.84063 0.81021 1.90712 1.44980 1.81378 1.30417 1.46026 1.42342 1.20473 1.27790 1.22658 0.94105 1.02906 0.85844 1.22335 1.00513 0.86371 0.99002 1.59376 1.06011 1.22493 1.37848 1.21884 0.89073 1.03814 0.93271 1.20703 0.82208 0.82252 0.91488 1.90485 1.53832 1.57088 1.48288 1.41925 1.06719 1.62558 1.10090 1.19585 0.92502 1.46184 0.87405 0.90248 1.25926 0.95332 0.96986 1.02851 1.69656 1.03049 1.50070 1.33478 0.85072 0.77193 0.78783 0.77810 1.19739 1.19904 1.19948 0.91435 0.91143 0.93208 0.91560 0.89911 0.92025 0.86860 0.88155 0.75717 0.90196 0.86997 0.90027 0.89795 0.90914 0.86788 0.77125 0.91498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.29 7.25 71.98 0.52 -2.77 16 2 C 0.13 3.01 0.64 3.82 0.00 3.01 16 3 C -0.14 -2.83 8.15 71.98 0.59 -2.24 16 4 C -0.17 -3.71 4.73 30.15 0.14 -3.56 16 5 C 0.52 13.32 5.10 88.09 0.45 13.77 16 6 O -0.59 -19.24 17.93 -3.05 -0.05 -19.29 16 7 N -0.71 -15.19 5.01 -461.82 -2.32 -17.50 16 8 C 0.07 1.52 6.38 86.25 0.55 2.07 16 9 C 0.05 1.27 5.00 86.58 0.43 1.70 16 10 N -0.53 -15.06 3.84 -857.37 -3.29 -18.35 16 11 C 0.05 1.50 4.39 85.56 0.38 1.88 16 12 C 0.45 19.23 7.38 87.66 0.65 19.87 16 13 O -0.61 -30.99 14.18 -3.08 -0.04 -31.03 16 14 N -0.58 -27.37 5.29 -306.98 -1.62 -29.00 16 15 C -0.33 -17.60 9.68 84.04 0.81 -16.78 16 16 H 0.08 4.56 7.16 -2.91 -0.02 4.54 16 17 C -0.01 -0.58 5.50 84.93 0.47 -0.11 16 18 N -0.92 -47.94 13.05 21.66 0.28 -47.65 16 19 Si 0.99 41.55 29.55 68.60 2.03 43.58 16 20 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 21 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 22 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 23 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 24 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.05 1.22 4.90 -2.39 -0.01 1.20 16 26 H 0.07 1.29 6.05 -2.39 -0.01 1.28 16 27 H 0.08 1.33 8.09 -2.39 -0.02 1.31 16 28 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 29 H 0.11 2.21 7.88 -2.38 -0.02 2.20 16 30 H 0.10 2.01 5.29 -2.39 -0.01 2.00 16 31 H 0.41 7.51 8.92 -92.71 -0.83 6.69 16 32 H 0.08 1.78 4.76 -2.39 -0.01 1.77 16 33 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.08 2.81 6.05 -2.39 -0.01 2.80 16 35 H 0.08 2.18 6.07 -2.39 -0.01 2.17 16 36 H 0.07 1.90 4.63 -2.39 -0.01 1.89 16 37 H 0.11 3.09 5.58 -2.39 -0.01 3.07 16 38 H 0.40 17.91 7.90 -92.71 -0.73 17.17 16 39 H 0.28 13.57 8.31 -92.71 -0.77 12.80 16 Total: -1.00 -66.28 298.55 -0.48 -66.75 By element: Atomic # 1 Polarization: 36.11 SS G_CDS: -0.45 Total: 35.66 kcal Atomic # 6 Polarization: 11.85 SS G_CDS: 4.99 Total: 16.84 kcal Atomic # 7 Polarization: -105.56 SS G_CDS: -6.95 Total: -112.51 kcal Atomic # 8 Polarization: -50.22 SS G_CDS: -0.10 Total: -50.32 kcal Atomic # 14 Polarization: 41.55 SS G_CDS: 2.03 Total: 43.58 kcal Total: -66.28 -0.48 -66.75 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931204127.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.086 kcal (2) G-P(sol) polarization free energy of solvation -66.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds