Wall clock time and date at job start Mon Mar 30 2020 01:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53003 * 109.47099 * 2 1 4 4 H 1.08998 * 109.49634 * 54.92930 * 3 2 1 5 5 C 1.53201 * 109.49455 * 294.83860 * 3 2 1 6 6 N 1.46927 * 108.77104 * 185.41040 * 5 3 2 7 7 C 1.34777 * 120.63012 * 233.60635 * 6 5 3 8 8 O 1.21355 * 119.99697 * 171.38279 * 7 6 5 9 9 C 1.49449 * 119.99987 * 351.38062 * 7 6 5 10 10 N 1.34773 * 119.99811 * 173.24454 * 9 7 6 11 11 O 1.21349 * 119.99970 * 353.23971 * 9 7 6 12 12 C 1.46930 * 118.73770 * 53.60906 * 6 5 3 13 13 C 1.53191 * 108.77566 * 306.38830 * 12 6 5 14 14 C 1.53032 * 109.49796 * 175.00160 * 3 2 1 15 15 H 1.08993 * 109.45341 * 61.30504 * 14 3 2 16 16 N 1.46498 * 109.45855 * 301.33356 * 14 3 2 17 17 C 1.36939 * 120.00033 * 154.93193 * 16 14 3 18 18 H 1.08001 * 120.00183 * 0.02562 * 17 16 14 19 19 C 1.38816 * 120.00163 * 180.02562 * 17 16 14 20 20 N 1.31616 * 119.99894 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 119.99961 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47494 * 59.99931 * 21 19 17 23 23 H 1.48497 * 109.47227 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47294 * 299.99889 * 21 19 17 25 25 H 1.09003 * 109.47041 * 299.99837 * 1 2 3 26 26 H 1.09003 * 109.46656 * 60.00221 * 1 2 3 27 27 H 1.09001 * 109.46643 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47041 * 240.00163 * 2 1 3 29 29 H 1.08994 * 109.47191 * 119.99530 * 2 1 3 30 30 H 1.08992 * 109.58659 * 305.19689 * 5 3 2 31 31 H 1.08996 * 109.58795 * 65.48466 * 5 3 2 32 32 H 0.97004 * 120.00021 * 359.97438 * 10 9 7 33 33 H 0.96996 * 119.99795 * 180.02562 * 10 9 7 34 34 H 1.09000 * 109.58724 * 186.59623 * 12 6 5 35 35 H 1.09000 * 109.58391 * 66.17540 * 12 6 5 36 36 H 1.09001 * 109.49216 * 174.58545 * 13 12 6 37 37 H 1.08993 * 109.49887 * 294.65199 * 13 12 6 38 38 H 0.97001 * 120.00450 * 334.93589 * 16 14 3 39 39 H 0.97001 * 119.99642 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6047 1.9823 0.8409 5 6 1.6385 2.1268 -1.3106 6 7 2.2450 3.4644 -1.3507 7 6 1.4856 4.5565 -1.5678 8 8 1.9662 5.6640 -1.4443 9 6 0.0518 4.4035 -1.9605 10 7 -0.7432 5.4886 -2.0449 11 8 -0.3966 3.3024 -2.2035 12 6 3.6952 3.5888 -1.1498 13 6 4.0736 2.8882 0.1589 14 6 3.5652 1.4451 0.1257 15 1 4.0007 0.9263 -0.7282 16 7 3.9541 0.7622 1.3620 17 6 5.1918 0.1852 1.4653 18 1 5.8813 0.2340 0.6355 19 6 5.5601 -0.4624 2.6366 20 7 4.7197 -0.5223 3.6477 21 14 7.2486 -1.2488 2.7777 22 1 8.2950 -0.2105 2.5976 23 1 7.3942 -1.8716 4.1179 24 1 7.3989 -2.2900 1.7296 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.9965 1.5377 -2.1549 31 1 0.5532 2.2138 -1.3598 32 1 -0.3848 6.3687 -1.8503 33 1 -1.6738 5.3893 -2.2994 34 1 3.9670 4.6428 -1.0919 35 1 4.2209 3.1190 -1.9811 36 1 5.1577 2.8895 0.2719 37 1 3.6197 3.4152 0.9981 38 1 3.3350 0.7186 2.1075 39 1 4.9770 -0.9751 4.4660 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001037912500.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:59 Heat of formation + Delta-G solvation = -55.242109 kcal Electronic energy + Delta-G solvation = -21595.092203 eV Core-core repulsion = 18345.141224 eV Total energy + Delta-G solvation = -3249.950979 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.91818 -38.77980 -37.87778 -34.91160 -33.74246 -33.67703 -31.84081 -29.73955 -28.56670 -25.90463 -24.48114 -23.64516 -22.29121 -20.86848 -20.06911 -19.45467 -18.04409 -17.31756 -16.95540 -16.35142 -15.88334 -15.33088 -14.87183 -14.26628 -14.23799 -13.93326 -13.77254 -13.32881 -13.20984 -13.01683 -12.67325 -12.13304 -12.02431 -11.54898 -11.30283 -11.21822 -10.89155 -10.82545 -10.67599 -10.34109 -10.22860 -10.14580 -10.10823 -9.84207 -9.68853 -9.10039 -8.86549 -8.57800 -6.94928 -5.76348 -3.04838 1.32446 2.42769 3.11534 3.43927 3.48782 3.49405 3.65036 4.34715 4.58977 5.11837 5.23712 5.34045 5.42699 5.52606 5.60448 5.66790 5.71215 5.77774 5.90294 6.01462 6.13751 6.20439 6.28756 6.35335 6.41136 6.46156 6.49516 6.53591 6.69232 6.76807 6.87280 6.97295 7.08046 7.30627 7.67899 7.69622 7.92520 8.41977 9.53397 10.10869 10.45976 11.46097 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.028280 B = 0.004989 C = 0.004458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.874199 B = 5610.581561 C = 6279.393183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.110 4.110 3 C -0.105 4.105 4 H 0.068 0.932 5 C 0.075 3.925 6 N -0.569 5.569 7 C 0.501 3.499 8 O -0.533 6.533 9 C 0.515 3.485 10 N -0.823 5.823 11 O -0.511 6.511 12 C 0.107 3.893 13 C -0.150 4.150 14 C 0.181 3.819 15 H 0.048 0.952 16 N -0.720 5.720 17 C -0.239 4.239 18 H 0.069 0.931 19 C -0.012 4.012 20 N -0.933 5.933 21 Si 0.905 3.095 22 H -0.287 1.287 23 H -0.292 1.292 24 H -0.286 1.286 25 H 0.049 0.951 26 H 0.053 0.947 27 H 0.049 0.951 28 H 0.057 0.943 29 H 0.083 0.917 30 H 0.068 0.932 31 H 0.137 0.863 32 H 0.413 0.587 33 H 0.409 0.591 34 H 0.087 0.913 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.060 0.940 38 H 0.384 0.616 39 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.643 9.330 -11.578 18.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.148 4.148 3 C -0.125 4.125 4 H 0.086 0.914 5 C -0.046 4.046 6 N -0.301 5.301 7 C 0.283 3.717 8 O -0.411 6.411 9 C 0.295 3.705 10 N -0.389 5.389 11 O -0.388 6.388 12 C -0.015 4.015 13 C -0.191 4.191 14 C 0.070 3.930 15 H 0.066 0.934 16 N -0.360 5.360 17 C -0.370 4.370 18 H 0.087 0.913 19 C -0.208 4.208 20 N -0.581 5.581 21 Si 0.736 3.264 22 H -0.213 1.213 23 H -0.218 1.218 24 H -0.213 1.213 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.076 0.924 29 H 0.102 0.898 30 H 0.087 0.913 31 H 0.153 0.847 32 H 0.244 0.756 33 H 0.241 0.759 34 H 0.106 0.894 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.079 0.921 38 H 0.218 0.782 39 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.303 9.031 -11.629 17.971 hybrid contribution 0.654 -0.071 0.449 0.796 sum -9.650 8.959 -11.180 17.274 Atomic orbital electron populations 1.21854 0.96769 1.01053 1.01397 1.21432 0.94416 0.95539 1.03452 1.21801 0.97600 0.96447 0.96647 0.91382 1.23019 1.02838 0.80768 0.98019 1.48095 1.08645 1.07110 1.66239 1.19915 0.86962 0.85108 0.79685 1.90737 1.73844 1.24779 1.51706 1.20309 0.87709 0.84759 0.77746 1.43560 1.14280 1.10359 1.70705 1.90578 1.75669 1.24409 1.48110 1.21909 0.78017 1.02418 0.99142 1.22681 1.02333 0.99057 0.95015 1.20235 0.90947 0.90535 0.91235 0.93363 1.42397 1.16487 1.64427 1.12690 1.19181 0.91850 1.27340 0.98604 0.91295 1.24714 0.98106 1.01543 0.96416 1.69648 1.35285 1.48381 1.04766 0.86303 0.84188 0.79176 0.76708 1.21343 1.21772 1.21316 0.93166 0.92804 0.93228 0.92417 0.89836 0.91335 0.84660 0.75617 0.75871 0.89433 0.91108 0.90397 0.92148 0.78212 0.93499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.13 9.68 37.16 0.36 -1.77 16 2 C -0.11 -1.80 5.31 -26.73 -0.14 -1.94 16 3 C -0.10 -1.73 1.92 -90.50 -0.17 -1.91 16 4 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 5 C 0.08 1.09 4.88 -3.71 -0.02 1.07 16 6 N -0.57 -8.36 2.97 -173.27 -0.51 -8.87 16 7 C 0.50 7.13 7.73 -11.59 -0.09 7.04 16 8 O -0.53 -8.34 15.93 5.49 0.09 -8.25 16 9 C 0.51 6.17 8.01 -11.59 -0.09 6.08 16 10 N -0.82 -6.40 8.86 30.90 0.27 -6.12 16 11 O -0.51 -7.03 14.02 5.50 0.08 -6.96 16 12 C 0.11 1.59 6.44 -3.71 -0.02 1.57 16 13 C -0.15 -2.64 5.66 -26.61 -0.15 -2.79 16 14 C 0.18 3.47 2.19 -67.89 -0.15 3.32 16 15 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 16 N -0.72 -17.33 4.33 -53.39 -0.23 -17.56 16 17 C -0.24 -6.41 9.93 -15.06 -0.15 -6.56 16 18 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 19 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 20 N -0.93 -27.71 13.06 55.49 0.72 -26.98 16 21 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.05 0.70 6.70 -51.93 -0.35 0.36 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.08 1.62 7.22 -51.93 -0.37 1.25 16 30 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.14 1.96 3.04 -54.76 -0.17 1.80 16 32 H 0.41 2.71 8.32 -40.82 -0.34 2.37 16 33 H 0.41 2.20 8.93 -40.82 -0.36 1.84 16 34 H 0.09 1.29 7.01 -51.93 -0.36 0.93 16 35 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 37 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.38 9.96 7.51 -40.82 -0.31 9.65 16 39 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 315.37 15.07 4.75 4.75 Total: -1.00 -31.13 315.37 -6.19 -37.32 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: -5.61 Total: 11.89 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: -0.73 Total: 3.68 kcal Atomic # 7 Polarization: -59.79 SS G_CDS: 0.25 Total: -59.54 kcal Atomic # 8 Polarization: -15.37 SS G_CDS: 0.16 Total: -15.21 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.13 -6.19 -37.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001037912500.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.924 kcal (2) G-P(sol) polarization free energy of solvation -31.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds