Wall clock time and date at job start Mon Mar 30 2020 01:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.67066 * 2 1 4 4 C 1.53072 * 109.70448 * 120.51241 * 2 1 3 5 5 C 1.50172 * 109.89331 * 168.64936 * 4 2 1 6 6 O 1.21277 * 118.24779 * 162.44124 * 5 4 2 7 7 N 1.33360 * 123.50829 * 342.42575 * 5 4 2 8 8 C 1.45753 * 124.10394 * 2.21708 * 7 5 4 9 9 H 1.08997 * 109.13573 * 101.13584 * 8 7 5 10 10 C 1.50701 * 109.29993 * 220.61843 * 8 7 5 11 11 O 1.21283 * 120.00272 * 21.03239 * 10 8 7 12 12 N 1.34777 * 120.00078 * 201.04069 * 10 8 7 13 13 C 1.46494 * 120.00401 * 179.97438 * 12 10 8 14 14 C 1.53004 * 109.47534 * 179.97438 * 13 12 10 15 15 N 1.46499 * 109.47198 * 180.02562 * 14 13 12 16 16 C 1.36931 * 120.00122 * 180.02562 * 15 14 13 17 17 H 1.08002 * 120.00098 * 0.02562 * 16 15 14 18 18 C 1.38812 * 120.00429 * 180.02562 * 16 15 14 19 19 N 1.31624 * 119.99535 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00187 * 180.27849 * 18 16 15 21 21 H 1.48497 * 109.47173 * 179.72427 * 20 18 16 22 22 H 1.48506 * 109.46866 * 299.71963 * 20 18 16 23 23 H 1.48501 * 109.47438 * 59.72083 * 20 18 16 24 24 C 1.52921 * 110.49068 * 340.92426 * 8 7 5 25 25 H 1.09001 * 109.46979 * 180.50275 * 1 2 3 26 26 H 1.09006 * 109.47339 * 300.50009 * 1 2 3 27 27 H 1.08998 * 109.47244 * 60.49681 * 1 2 3 28 28 H 1.08998 * 109.40231 * 288.78276 * 4 2 1 29 29 H 1.09002 * 109.39709 * 48.52351 * 4 2 1 30 30 H 0.96994 * 117.94926 * 182.21771 * 7 5 4 31 31 H 0.97000 * 120.00140 * 359.97438 * 12 10 8 32 32 H 1.09000 * 109.47432 * 59.99467 * 13 12 10 33 33 H 1.08998 * 109.47326 * 299.99662 * 13 12 10 34 34 H 1.08995 * 109.46638 * 59.99881 * 14 13 12 35 35 H 1.08998 * 109.46846 * 300.00334 * 14 13 12 36 36 H 0.97001 * 119.99790 * 359.97438 * 15 14 13 37 37 H 0.97005 * 119.99717 * 180.02562 * 19 18 16 38 38 H 1.09004 * 109.60557 * 170.50652 * 24 8 7 39 39 H 1.08996 * 109.60764 * 290.83858 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8969 1.0264 0.0000 4 6 2.0461 -0.7317 1.2415 5 6 3.5218 -0.9784 1.1127 6 8 4.1486 -1.2468 2.1156 7 7 4.1799 -0.9183 -0.0457 8 6 3.5642 -0.5626 -1.3179 9 1 3.7994 0.4759 -1.5507 10 6 4.1129 -1.4529 -2.4030 11 8 4.6215 -2.5159 -2.1160 12 7 4.0388 -1.0678 -3.6925 13 6 4.5727 -1.9328 -4.7473 14 6 4.3628 -1.2665 -6.1085 15 7 4.8962 -2.1319 -7.1633 16 6 4.8207 -1.7407 -8.4734 17 1 4.3683 -0.7939 -8.7290 18 6 5.3256 -2.5609 -9.4729 19 7 5.8774 -3.7146 -9.1614 20 14 5.2297 -2.0237 -11.2594 21 1 5.8398 -3.0661 -12.1233 22 1 3.8078 -1.8328 -11.6432 23 1 5.9649 -0.7451 -11.4320 24 6 2.0463 -0.7329 -1.2441 25 1 -0.3633 -1.0276 0.0090 26 1 -0.3634 0.5216 0.8855 27 1 -0.3633 0.5061 -0.8944 28 1 1.8566 -0.1229 2.1255 29 1 1.5271 -1.6849 1.3418 30 1 5.1278 -1.1243 -0.0412 31 1 3.6318 -0.2177 -3.9221 32 1 4.0539 -2.8913 -4.7285 33 1 5.6380 -2.0931 -4.5813 34 1 4.8813 -0.3080 -6.1275 35 1 3.2974 -1.1066 -6.2742 36 1 5.3035 -2.9818 -6.9336 37 1 6.2306 -4.2877 -9.8598 38 1 1.5867 -0.3072 -2.1362 39 1 1.7999 -1.7924 -1.1759 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001127570951.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:37 Heat of formation + Delta-G solvation = -75.754307 kcal Electronic energy + Delta-G solvation = -20211.251885 eV Core-core repulsion = 16960.411430 eV Total energy + Delta-G solvation = -3250.840455 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.04191 -39.35692 -37.00540 -35.84292 -34.32121 -33.96940 -31.46367 -30.31489 -28.35777 -27.71560 -25.06495 -23.48778 -21.90728 -21.57186 -20.61403 -19.60012 -17.93534 -17.30775 -17.16720 -16.66828 -15.80088 -15.37936 -15.15843 -14.77051 -14.65016 -14.52476 -13.84492 -13.77214 -13.56858 -13.24930 -12.97566 -12.91770 -12.55256 -12.17321 -11.87057 -11.52267 -11.35979 -11.23039 -11.17821 -10.89777 -10.84053 -10.32244 -10.18902 -9.95218 -9.80345 -9.30661 -9.10796 -8.93349 -7.05600 -5.84462 -3.15814 2.35046 2.37090 2.80989 3.21333 3.39231 3.43661 3.45188 4.12454 4.17327 4.19147 4.25368 4.52796 4.62610 4.71213 4.93363 5.08833 5.14197 5.22224 5.31277 5.38256 5.42551 5.43986 5.52865 5.67749 5.68598 5.81537 5.86603 6.04414 6.33691 6.47810 6.60965 6.61429 7.03042 7.39197 7.60200 7.94660 8.07908 8.32907 9.44169 9.98203 10.32574 11.37945 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.038818 B = 0.002975 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.145491 B = 9410.546618 C = 9913.455750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.093 4.093 3 H 0.083 0.917 4 C -0.132 4.132 5 C 0.525 3.475 6 O -0.556 6.556 7 N -0.699 5.699 8 C 0.127 3.873 9 H 0.100 0.900 10 C 0.498 3.502 11 O -0.528 6.528 12 N -0.716 5.716 13 C 0.110 3.890 14 C 0.145 3.855 15 N -0.730 5.730 16 C -0.247 4.247 17 H 0.072 0.928 18 C -0.011 4.011 19 N -0.931 5.931 20 Si 0.911 3.089 21 H -0.290 1.290 22 H -0.285 1.285 23 H -0.285 1.285 24 C -0.125 4.125 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.062 0.938 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.405 0.595 31 H 0.401 0.599 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.025 0.975 35 H 0.025 0.975 36 H 0.386 0.614 37 H 0.258 0.742 38 H 0.094 0.906 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.198 10.697 18.043 23.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 H 0.101 0.899 4 C -0.172 4.172 5 C 0.312 3.688 6 O -0.434 6.434 7 N -0.352 5.352 8 C 0.017 3.983 9 H 0.117 0.883 10 C 0.281 3.719 11 O -0.404 6.404 12 N -0.368 5.368 13 C -0.014 4.014 14 C 0.017 3.983 15 N -0.375 5.375 16 C -0.378 4.378 17 H 0.089 0.911 18 C -0.207 4.207 19 N -0.578 5.578 20 Si 0.742 3.258 21 H -0.216 1.216 22 H -0.212 1.212 23 H -0.212 1.212 24 C -0.163 4.163 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.081 0.919 28 H 0.121 0.879 29 H 0.121 0.879 30 H 0.242 0.758 31 H 0.235 0.765 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.042 0.958 35 H 0.042 0.958 36 H 0.220 0.780 37 H 0.068 0.932 38 H 0.113 0.887 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.760 9.901 18.607 23.665 hybrid contribution 0.321 0.253 -1.296 1.359 sum -10.439 10.154 17.311 22.622 Atomic orbital electron populations 1.21816 0.93599 1.02549 1.02470 1.21260 0.96939 0.99783 0.93211 0.89857 1.21775 0.91679 1.03554 1.00189 1.20143 0.90399 0.75878 0.82401 1.90774 1.68362 1.49100 1.35188 1.45242 1.13780 1.70095 1.06102 1.20891 0.95027 0.98766 0.83611 0.88263 1.20680 0.80001 0.87373 0.83810 1.90773 1.43982 1.23132 1.82466 1.45896 1.61182 1.23720 1.05958 1.21637 0.99515 0.93878 0.86346 1.20751 0.97124 0.94094 0.86343 1.42178 1.71713 1.21771 1.01817 1.19136 1.33274 1.02565 0.82832 0.91052 1.24789 1.00987 0.96703 0.98242 1.69660 1.44465 1.11346 1.32350 0.86218 0.77619 0.77445 0.84564 1.21580 1.21154 1.21151 1.21973 0.91264 1.03080 0.99953 0.92164 0.92061 0.91865 0.87929 0.87937 0.75766 0.76459 0.91105 0.91097 0.95763 0.95752 0.77986 0.93242 0.88702 0.89926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 9.20 37.16 0.34 -0.27 16 2 C -0.09 -0.48 2.80 -90.40 -0.25 -0.74 16 3 H 0.08 0.37 8.13 -51.93 -0.42 -0.05 16 4 C -0.13 -0.95 5.36 -28.10 -0.15 -1.11 16 5 C 0.52 5.91 7.71 -11.87 -0.09 5.82 16 6 O -0.56 -8.66 17.78 5.56 0.10 -8.56 16 7 N -0.70 -7.29 4.79 -55.99 -0.27 -7.56 16 8 C 0.13 1.04 3.45 -69.53 -0.24 0.80 16 9 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 10 C 0.50 6.02 6.98 -10.98 -0.08 5.95 16 11 O -0.53 -8.91 16.40 5.55 0.09 -8.82 16 12 N -0.72 -8.17 5.56 -60.30 -0.33 -8.51 16 13 C 0.11 1.73 5.79 -4.04 -0.02 1.70 16 14 C 0.15 2.65 6.37 -4.04 -0.03 2.63 16 15 N -0.73 -17.96 5.60 -59.91 -0.34 -18.29 16 16 C -0.25 -6.74 9.99 -15.06 -0.15 -6.89 16 17 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 18 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 19 N -0.93 -27.86 13.06 55.49 0.72 -27.13 16 20 Si 0.91 21.88 29.55 -169.99 -5.02 16.86 16 21 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 C -0.12 -0.79 4.58 -26.59 -0.12 -0.91 16 25 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 27 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.10 0.69 8.10 -51.93 -0.42 0.27 16 30 H 0.41 4.68 8.46 -40.82 -0.35 4.34 16 31 H 0.40 3.25 8.47 -40.82 -0.35 2.90 16 32 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 33 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.39 10.13 7.67 -40.82 -0.31 9.81 16 37 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 38 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.08 0.65 8.10 -51.93 -0.42 0.23 16 LS Contribution 328.29 15.07 4.95 4.95 Total: -1.00 -35.21 328.29 -7.03 -42.24 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -6.04 Total: 8.24 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: -0.89 Total: 6.59 kcal Atomic # 7 Polarization: -61.27 SS G_CDS: -0.21 Total: -61.49 kcal Atomic # 8 Polarization: -17.57 SS G_CDS: 0.19 Total: -17.38 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -35.21 -7.03 -42.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127570951.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.518 kcal (2) G-P(sol) polarization free energy of solvation -35.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds