Wall clock time and date at job start Mon Mar 30 2020 01:37:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.67066 * 2 1 4 4 C 1.53072 * 109.70448 * 120.51241 * 2 1 3 5 5 C 1.50172 * 109.89331 * 168.64936 * 4 2 1 6 6 O 1.21277 * 118.24779 * 162.44124 * 5 4 2 7 7 N 1.33360 * 123.50829 * 342.42575 * 5 4 2 8 8 C 1.45753 * 124.10394 * 2.21708 * 7 5 4 9 9 H 1.08997 * 109.13573 * 101.13584 * 8 7 5 10 10 C 1.50701 * 109.29993 * 220.61843 * 8 7 5 11 11 O 1.21283 * 120.00272 * 21.03239 * 10 8 7 12 12 N 1.34777 * 120.00078 * 201.04069 * 10 8 7 13 13 C 1.46494 * 120.00401 * 179.97438 * 12 10 8 14 14 C 1.53004 * 109.47534 * 179.97438 * 13 12 10 15 15 N 1.46499 * 109.47198 * 180.02562 * 14 13 12 16 16 C 1.36931 * 120.00122 * 180.02562 * 15 14 13 17 17 H 1.08002 * 120.00098 * 0.02562 * 16 15 14 18 18 C 1.38812 * 120.00429 * 180.02562 * 16 15 14 19 19 N 1.31624 * 119.99535 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00187 * 180.27849 * 18 16 15 21 21 H 1.48497 * 109.47173 * 179.72427 * 20 18 16 22 22 H 1.48506 * 109.46866 * 299.71963 * 20 18 16 23 23 H 1.48501 * 109.47438 * 59.72083 * 20 18 16 24 24 C 1.52921 * 110.49068 * 340.92426 * 8 7 5 25 25 H 1.09001 * 109.46979 * 180.50275 * 1 2 3 26 26 H 1.09006 * 109.47339 * 300.50009 * 1 2 3 27 27 H 1.08998 * 109.47244 * 60.49681 * 1 2 3 28 28 H 1.08998 * 109.40231 * 288.78276 * 4 2 1 29 29 H 1.09002 * 109.39709 * 48.52351 * 4 2 1 30 30 H 0.96994 * 117.94926 * 182.21771 * 7 5 4 31 31 H 0.97000 * 120.00140 * 359.97438 * 12 10 8 32 32 H 1.09000 * 109.47432 * 59.99467 * 13 12 10 33 33 H 1.08998 * 109.47326 * 299.99662 * 13 12 10 34 34 H 1.08995 * 109.46638 * 59.99881 * 14 13 12 35 35 H 1.08998 * 109.46846 * 300.00334 * 14 13 12 36 36 H 0.97001 * 119.99790 * 359.97438 * 15 14 13 37 37 H 0.97005 * 119.99717 * 180.02562 * 19 18 16 38 38 H 1.09004 * 109.60557 * 170.50652 * 24 8 7 39 39 H 1.08996 * 109.60764 * 290.83858 * 24 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8969 1.0264 0.0000 4 6 2.0461 -0.7317 1.2415 5 6 3.5218 -0.9784 1.1127 6 8 4.1486 -1.2468 2.1156 7 7 4.1799 -0.9183 -0.0457 8 6 3.5642 -0.5626 -1.3179 9 1 3.7994 0.4759 -1.5507 10 6 4.1129 -1.4529 -2.4030 11 8 4.6215 -2.5159 -2.1160 12 7 4.0388 -1.0678 -3.6925 13 6 4.5727 -1.9328 -4.7473 14 6 4.3628 -1.2665 -6.1085 15 7 4.8962 -2.1319 -7.1633 16 6 4.8207 -1.7407 -8.4734 17 1 4.3683 -0.7939 -8.7290 18 6 5.3256 -2.5609 -9.4729 19 7 5.8774 -3.7146 -9.1614 20 14 5.2297 -2.0237 -11.2594 21 1 5.8398 -3.0661 -12.1233 22 1 3.8078 -1.8328 -11.6432 23 1 5.9649 -0.7451 -11.4320 24 6 2.0463 -0.7329 -1.2441 25 1 -0.3633 -1.0276 0.0090 26 1 -0.3634 0.5216 0.8855 27 1 -0.3633 0.5061 -0.8944 28 1 1.8566 -0.1229 2.1255 29 1 1.5271 -1.6849 1.3418 30 1 5.1278 -1.1243 -0.0412 31 1 3.6318 -0.2177 -3.9221 32 1 4.0539 -2.8913 -4.7285 33 1 5.6380 -2.0931 -4.5813 34 1 4.8813 -0.3080 -6.1275 35 1 3.2974 -1.1066 -6.2742 36 1 5.3035 -2.9818 -6.9336 37 1 6.2306 -4.2877 -9.8598 38 1 1.5867 -0.3072 -2.1362 39 1 1.7999 -1.7924 -1.1759 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001127570951.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:37 Heat of formation + Delta-G solvation = -104.397113 kcal Electronic energy + Delta-G solvation = -20212.493930 eV Core-core repulsion = 16960.411430 eV Total energy + Delta-G solvation = -3252.082500 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.88563 -40.38679 -37.82313 -37.28370 -35.56491 -35.00127 -33.21815 -31.29726 -29.32196 -28.69638 -26.13343 -25.05128 -23.11877 -22.50762 -21.59125 -20.22530 -19.37808 -18.66602 -18.11966 -17.57550 -16.77224 -16.66215 -16.32472 -16.12760 -15.60334 -15.41600 -15.21284 -15.01490 -14.70663 -14.51201 -14.26199 -13.45227 -13.09964 -13.03278 -12.97302 -12.77394 -12.62826 -12.53666 -12.43364 -12.11542 -11.91074 -11.84678 -11.63481 -11.25569 -10.96916 -10.82080 -10.25031 -10.16146 -9.05717 -7.96345 -5.27612 1.40341 1.46790 1.49899 1.52831 1.59015 1.89593 2.33689 2.58553 3.38314 3.44773 3.52563 3.61624 3.73636 3.95739 4.02446 4.16307 4.20106 4.23021 4.45892 4.60056 4.68482 4.69673 4.79711 4.85308 4.98799 5.02282 5.15151 5.16458 5.32144 5.34814 5.49661 5.50055 5.60041 6.21200 6.24490 6.46238 7.07211 7.14528 7.30762 8.03533 8.25078 9.27214 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.038818 B = 0.002975 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.145491 B = 9410.546618 C = 9913.455750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.082 4.082 3 H 0.101 0.899 4 C -0.128 4.128 5 C 0.519 3.481 6 O -0.609 6.609 7 N -0.702 5.702 8 C 0.134 3.866 9 H 0.141 0.859 10 C 0.498 3.502 11 O -0.581 6.581 12 N -0.699 5.699 13 C 0.127 3.873 14 C 0.148 3.852 15 N -0.749 5.749 16 C -0.248 4.248 17 H 0.085 0.915 18 C -0.078 4.078 19 N -0.972 5.972 20 Si 0.979 3.021 21 H -0.299 1.299 22 H -0.274 1.274 23 H -0.275 1.275 24 C -0.124 4.124 25 H 0.054 0.946 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.114 0.886 29 H 0.106 0.894 30 H 0.396 0.604 31 H 0.422 0.578 32 H 0.053 0.947 33 H 0.051 0.949 34 H 0.040 0.960 35 H 0.042 0.958 36 H 0.373 0.627 37 H 0.252 0.748 38 H 0.123 0.877 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.231 13.466 17.749 25.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.101 4.101 3 H 0.119 0.881 4 C -0.168 4.168 5 C 0.308 3.692 6 O -0.491 6.491 7 N -0.352 5.352 8 C 0.026 3.974 9 H 0.159 0.841 10 C 0.284 3.716 11 O -0.461 6.461 12 N -0.352 5.352 13 C 0.002 3.998 14 C 0.022 3.978 15 N -0.392 5.392 16 C -0.379 4.379 17 H 0.103 0.897 18 C -0.270 4.270 19 N -0.623 5.623 20 Si 0.807 3.193 21 H -0.225 1.225 22 H -0.200 1.200 23 H -0.201 1.201 24 C -0.162 4.162 25 H 0.073 0.927 26 H 0.087 0.913 27 H 0.093 0.907 28 H 0.132 0.868 29 H 0.124 0.876 30 H 0.231 0.769 31 H 0.260 0.740 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.204 0.796 37 H 0.060 0.940 38 H 0.141 0.859 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -12.858 12.766 18.304 25.755 hybrid contribution 0.943 -0.582 -1.144 1.592 sum -11.915 12.184 17.160 24.185 Atomic orbital electron populations 1.21800 0.92391 1.02568 1.03428 1.21235 0.97703 1.00031 0.91122 0.88066 1.21835 0.88510 1.04358 1.02056 1.20905 0.91874 0.74688 0.81705 1.90743 1.69764 1.51617 1.36982 1.45408 1.13508 1.69362 1.06900 1.21136 0.95963 0.99403 0.80909 0.84125 1.21416 0.78772 0.87010 0.84383 1.90763 1.46370 1.25707 1.83224 1.45622 1.60702 1.23923 1.04935 1.21161 0.98372 0.93743 0.86553 1.20873 0.97655 0.93582 0.85705 1.42444 1.72026 1.22158 1.02615 1.19630 1.31652 1.02607 0.84038 0.89689 1.25671 1.01673 0.97022 1.02612 1.69835 1.46417 1.12792 1.33216 0.85141 0.77956 0.76891 0.79325 1.22546 1.19987 1.20103 1.22072 0.89592 1.02569 1.01957 0.92667 0.91298 0.90749 0.86763 0.87627 0.76886 0.73959 0.92890 0.93034 0.94232 0.93993 0.79574 0.93957 0.85857 0.91712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.68 9.20 71.98 0.66 -0.02 16 2 C -0.08 -0.57 2.80 -10.65 -0.03 -0.60 16 3 H 0.10 0.42 8.13 -2.39 -0.02 0.40 16 4 C -0.13 -1.62 5.36 29.71 0.16 -1.46 16 5 C 0.52 11.46 7.71 87.71 0.68 12.14 16 6 O -0.61 -19.48 17.78 -3.02 -0.05 -19.53 16 7 N -0.70 -14.08 4.79 -450.23 -2.16 -16.24 16 8 C 0.13 1.85 3.45 44.36 0.15 2.01 16 9 H 0.14 0.90 8.14 -2.39 -0.02 0.88 16 10 C 0.50 11.40 6.98 87.66 0.61 12.01 16 11 O -0.58 -19.93 16.40 -3.04 -0.05 -19.98 16 12 N -0.70 -14.44 5.56 -463.06 -2.57 -17.01 16 13 C 0.13 3.91 5.79 86.38 0.50 4.41 16 14 C 0.15 5.16 6.37 86.38 0.55 5.71 16 15 N -0.75 -36.64 5.60 -343.46 -1.92 -38.57 16 16 C -0.25 -13.28 9.99 84.03 0.84 -12.44 16 17 H 0.09 4.23 7.83 -2.91 -0.02 4.20 16 18 C -0.08 -4.36 5.50 84.86 0.47 -3.89 16 19 N -0.97 -59.26 13.06 21.65 0.28 -58.98 16 20 Si 0.98 44.73 29.55 68.60 2.03 46.76 16 21 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 22 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 23 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 24 C -0.12 -1.17 4.58 30.68 0.14 -1.03 16 25 H 0.05 0.33 8.14 -2.39 -0.02 0.31 16 26 H 0.07 0.25 8.14 -2.38 -0.02 0.23 16 27 H 0.07 0.23 8.14 -2.39 -0.02 0.21 16 28 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.11 1.29 8.10 -2.39 -0.02 1.27 16 30 H 0.40 9.29 8.46 -92.71 -0.78 8.50 16 31 H 0.42 5.20 8.47 -92.71 -0.79 4.42 16 32 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.05 1.80 8.14 -2.39 -0.02 1.79 16 34 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.04 1.35 8.14 -2.39 -0.02 1.34 16 36 H 0.37 19.96 7.67 -92.71 -0.71 19.25 16 37 H 0.25 14.92 8.31 -92.70 -0.77 14.15 16 38 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.06 0.89 8.10 -2.39 -0.02 0.87 16 Total: -1.00 -78.94 328.29 -0.92 -79.86 By element: Atomic # 1 Polarization: 28.04 SS G_CDS: -1.21 Total: 26.83 kcal Atomic # 6 Polarization: 12.12 SS G_CDS: 4.73 Total: 16.85 kcal Atomic # 7 Polarization: -124.42 SS G_CDS: -6.37 Total: -130.79 kcal Atomic # 8 Polarization: -39.41 SS G_CDS: -0.10 Total: -39.51 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -78.94 -0.92 -79.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127570951.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.533 kcal (2) G-P(sol) polarization free energy of solvation -78.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds