Wall clock time and date at job start Mon Mar 30 2020 01:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.45010 * 2 1 4 4 C 1.53042 * 109.45893 * 119.96283 * 2 1 3 5 5 C 1.53197 * 109.31153 * 58.65640 * 4 2 1 6 6 N 1.46925 * 108.77636 * 54.63433 * 5 4 2 7 7 C 1.34769 * 120.62894 * 126.36917 * 6 5 4 8 8 O 1.21354 * 119.99950 * 173.08696 * 7 6 5 9 9 C 1.49450 * 120.00206 * 353.09039 * 7 6 5 10 10 N 1.34780 * 120.00073 * 173.33125 * 9 7 6 11 11 O 1.21347 * 119.99971 * 353.33777 * 9 7 6 12 12 C 1.46926 * 118.73763 * 306.39130 * 6 5 4 13 13 C 1.53039 * 109.46013 * 240.03052 * 2 1 3 14 14 H 1.09000 * 109.50026 * 181.39559 * 13 2 1 15 15 C 1.53003 * 109.52520 * 61.31199 * 13 2 1 16 16 N 1.46492 * 109.47204 * 175.07698 * 15 13 2 17 17 C 1.36936 * 120.00200 * 179.97438 * 16 15 13 18 18 H 1.07997 * 119.99885 * 0.02562 * 17 16 15 19 19 C 1.38814 * 120.00375 * 180.02562 * 17 16 15 20 20 N 1.31616 * 119.99914 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 119.99783 * 0.02562 * 19 17 16 22 22 H 1.48502 * 109.47039 * 90.00191 * 21 19 17 23 23 H 1.48498 * 109.47018 * 209.99911 * 21 19 17 24 24 H 1.48500 * 109.47450 * 330.00249 * 21 19 17 25 25 H 1.09001 * 109.47422 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47462 * 299.96961 * 1 2 3 27 27 H 1.09009 * 109.46870 * 59.96792 * 1 2 3 28 28 H 1.08998 * 109.49805 * 298.70525 * 4 2 1 29 29 H 1.09001 * 109.52168 * 178.62134 * 4 2 1 30 30 H 1.08998 * 109.58215 * 294.84899 * 5 4 2 31 31 H 1.09000 * 109.69907 * 174.49211 * 5 4 2 32 32 H 0.97004 * 120.00008 * 0.02562 * 10 9 7 33 33 H 0.96996 * 119.99935 * 179.97438 * 10 9 7 34 34 H 1.08997 * 109.58669 * 293.82173 * 12 6 5 35 35 H 1.08998 * 109.58318 * 173.39724 * 12 6 5 36 36 H 1.08995 * 109.47290 * 295.08324 * 15 13 2 37 37 H 1.08999 * 109.46644 * 55.08295 * 15 13 2 38 38 H 0.97010 * 120.00085 * 0.02562 * 16 15 13 39 39 H 0.97006 * 119.99730 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0398 -0.7207 1.2501 5 6 1.4995 -2.1541 1.2643 6 7 1.8625 -2.8089 0.0001 7 6 2.5163 -3.9874 0.0002 8 8 2.6999 -4.5795 -1.0430 9 6 3.0152 -4.5651 1.2851 10 7 3.5485 -5.8027 1.3054 11 8 2.9400 -3.9199 2.3101 12 6 1.4995 -2.1542 -1.2641 13 6 2.0398 -0.7208 -1.2500 14 1 3.1295 -0.7429 -1.2383 15 6 1.5575 0.0190 -2.4994 16 7 2.1418 -0.6019 -3.6907 17 6 1.8508 -0.1065 -4.9337 18 1 1.1907 0.7422 -5.0357 19 6 2.4040 -0.6952 -6.0625 20 7 2.1246 -0.2186 -7.2572 21 14 3.5451 -2.1636 -5.8860 22 1 2.7492 -3.4167 -5.9270 23 1 4.5269 -2.1642 -7.0001 24 1 4.2661 -2.0774 -4.5907 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5133 0.8902 27 1 -0.3633 0.5144 -0.8898 28 1 1.6957 -0.1934 2.1399 29 1 3.1295 -0.7428 1.2389 30 1 0.4146 -2.1346 1.3674 31 1 1.9360 -2.7031 2.0987 32 1 3.6089 -6.3183 0.4860 33 1 3.8726 -6.1775 2.1393 34 1 0.4146 -2.1348 -1.3672 35 1 1.9381 -2.7019 -2.0982 36 1 0.4705 -0.0358 -2.5572 37 1 1.8663 1.0629 -2.4453 38 1 2.7344 -1.3645 -3.5990 39 1 2.5115 -0.6298 -8.0460 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133084643.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:47 Heat of formation + Delta-G solvation = -44.110459 kcal Electronic energy + Delta-G solvation = -21624.277124 eV Core-core repulsion = 18374.808849 eV Total energy + Delta-G solvation = -3249.468275 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.12485 -39.20506 -38.06493 -35.26012 -34.20517 -33.34748 -31.91447 -30.25409 -27.90492 -26.64285 -25.16854 -23.55966 -22.89972 -21.10124 -20.50359 -18.82965 -17.78389 -17.47612 -17.34961 -16.45186 -15.84836 -15.49547 -15.23065 -14.91578 -14.50153 -14.19348 -13.90187 -13.76536 -13.28906 -12.97808 -12.67793 -12.49056 -12.45918 -11.72861 -11.54640 -11.31458 -11.17310 -10.93842 -10.80016 -10.71223 -10.37438 -10.22635 -10.15695 -10.05811 -9.54971 -9.20695 -8.86231 -8.65076 -7.19712 -5.73681 -3.09106 1.21666 2.31802 3.03050 3.43395 3.48045 3.51025 3.53173 4.21922 4.63774 4.76339 4.87107 4.89687 5.11740 5.29527 5.41065 5.54014 5.58044 5.60280 5.67393 5.73999 5.80341 5.88646 5.91251 6.04205 6.20043 6.23692 6.27768 6.30280 6.41811 6.52176 6.63519 6.68491 6.78828 7.19258 7.59580 7.83534 8.02099 8.45282 9.24264 9.97103 10.16384 11.44647 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.019040 B = 0.006200 C = 0.004865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.219094 B = 4515.135561 C = 5754.254028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.087 4.087 3 H 0.075 0.925 4 C -0.123 4.123 5 C 0.047 3.953 6 N -0.573 5.573 7 C 0.499 3.501 8 O -0.519 6.519 9 C 0.520 3.480 10 N -0.820 5.820 11 O -0.514 6.514 12 C 0.113 3.887 13 C -0.106 4.106 14 H 0.073 0.927 15 C 0.165 3.835 16 N -0.757 5.757 17 C -0.244 4.244 18 H 0.090 0.910 19 C 0.006 3.994 20 N -0.934 5.934 21 Si 0.882 3.118 22 H -0.282 1.282 23 H -0.291 1.291 24 H -0.277 1.277 25 H 0.056 0.944 26 H 0.051 0.949 27 H 0.064 0.936 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.151 0.849 32 H 0.416 0.584 33 H 0.410 0.590 34 H 0.079 0.921 35 H 0.096 0.904 36 H 0.033 0.967 37 H 0.031 0.969 38 H 0.361 0.639 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.164 -7.554 21.990 23.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.106 4.106 3 H 0.094 0.906 4 C -0.161 4.161 5 C -0.074 4.074 6 N -0.305 5.305 7 C 0.280 3.720 8 O -0.396 6.396 9 C 0.300 3.700 10 N -0.385 5.385 11 O -0.391 6.391 12 C -0.008 4.008 13 C -0.125 4.125 14 H 0.092 0.908 15 C 0.037 3.963 16 N -0.403 5.403 17 C -0.374 4.374 18 H 0.108 0.892 19 C -0.190 4.190 20 N -0.582 5.582 21 Si 0.712 3.288 22 H -0.209 1.209 23 H -0.217 1.217 24 H -0.204 1.204 25 H 0.075 0.925 26 H 0.070 0.930 27 H 0.083 0.917 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.168 0.832 32 H 0.246 0.754 33 H 0.242 0.758 34 H 0.097 0.903 35 H 0.114 0.886 36 H 0.051 0.949 37 H 0.049 0.951 38 H 0.194 0.806 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.304 -7.178 21.782 22.936 hybrid contribution 1.018 -1.337 -0.168 1.689 sum 0.714 -8.515 21.614 23.242 Atomic orbital electron populations 1.21991 0.95098 1.01967 1.01966 1.21108 0.96161 0.99496 0.93849 0.90634 1.21867 1.01032 0.95121 0.98091 1.23251 1.01012 0.95291 0.87851 1.48055 1.53763 1.19527 1.09195 1.19901 0.80330 0.82708 0.89039 1.90809 1.56454 1.59462 1.32852 1.20346 0.77956 0.82351 0.89364 1.43581 1.62581 1.16678 1.15674 1.90370 1.55270 1.58322 1.35140 1.21932 1.00804 0.93116 0.84961 1.21751 1.00877 0.94075 0.95839 0.90823 1.20672 0.96444 0.95007 0.84153 1.42782 1.57405 1.37504 1.02620 1.19043 1.24195 1.12320 0.81812 0.89192 1.24649 1.00169 0.99046 0.95110 1.69704 1.48373 1.43154 0.97014 0.86592 0.81372 0.83949 0.76913 1.20873 1.21741 1.20362 0.92522 0.92961 0.91691 0.90741 0.91698 0.91525 0.83244 0.75363 0.75777 0.90287 0.88550 0.94936 0.95123 0.80628 0.93091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 8.11 37.16 0.30 -1.42 16 2 C -0.09 -1.06 2.71 -90.58 -0.25 -1.31 16 3 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 4 C -0.12 -1.34 5.63 -26.61 -0.15 -1.49 16 5 C 0.05 0.53 5.80 -3.71 -0.02 0.51 16 6 N -0.57 -7.92 2.97 -173.28 -0.51 -8.44 16 7 C 0.50 7.10 7.74 -11.59 -0.09 7.01 16 8 O -0.52 -8.82 15.94 5.49 0.09 -8.73 16 9 C 0.52 5.88 8.05 -11.58 -0.09 5.79 16 10 N -0.82 -6.14 8.87 30.91 0.27 -5.86 16 11 O -0.51 -6.36 13.94 5.50 0.08 -6.29 16 12 C 0.11 1.78 5.03 -3.71 -0.02 1.77 16 13 C -0.11 -1.64 2.15 -90.50 -0.19 -1.84 16 14 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 15 C 0.16 3.15 5.19 -4.04 -0.02 3.13 16 16 N -0.76 -18.31 5.18 -59.92 -0.31 -18.62 16 17 C -0.24 -7.02 10.47 -15.06 -0.16 -7.17 16 18 H 0.09 2.75 8.06 -52.49 -0.42 2.32 16 19 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 20 N -0.93 -29.83 13.97 55.49 0.78 -29.06 16 21 Si 0.88 23.02 27.74 -169.99 -4.71 18.30 16 22 H -0.28 -7.37 7.11 56.52 0.40 -6.96 16 23 H -0.29 -7.63 7.11 56.52 0.40 -7.23 16 24 H -0.28 -6.95 6.52 56.52 0.37 -6.58 16 25 H 0.06 0.64 4.98 -51.93 -0.26 0.38 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.79 6.58 -51.92 -0.34 0.45 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 0.69 6.69 -51.93 -0.35 0.35 16 31 H 0.15 1.75 3.78 -56.75 -0.21 1.54 16 32 H 0.42 2.79 8.32 -40.82 -0.34 2.45 16 33 H 0.41 2.01 8.93 -40.82 -0.36 1.64 16 34 H 0.08 1.19 6.69 -51.93 -0.35 0.84 16 35 H 0.10 1.81 6.26 -51.93 -0.32 1.48 16 36 H 0.03 0.62 6.73 -51.93 -0.35 0.27 16 37 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.36 8.73 4.76 -40.82 -0.19 8.54 16 39 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 LS Contribution 304.66 15.07 4.59 4.59 Total: -1.00 -34.16 304.66 -5.73 -39.89 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: -5.21 Total: 9.16 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: -0.79 Total: 5.06 kcal Atomic # 7 Polarization: -62.20 SS G_CDS: 0.22 Total: -61.98 kcal Atomic # 8 Polarization: -15.18 SS G_CDS: 0.16 Total: -15.02 kcal Atomic # 14 Polarization: 23.02 SS G_CDS: -4.71 Total: 18.30 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -34.16 -5.73 -39.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133084643.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.221 kcal (2) G-P(sol) polarization free energy of solvation -34.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.110 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds