Wall clock time and date at job start Mon Mar 30 2020 00:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 110.77964 * 2 1 4 4 N 1.46503 * 109.47129 * 56.76023 * 3 2 1 5 5 C 1.36938 * 120.00489 * 180.02562 * 4 3 2 6 6 H 1.08004 * 119.99361 * 359.97438 * 5 4 3 7 7 C 1.38804 * 120.00485 * 179.97438 * 5 4 3 8 8 N 1.31616 * 120.00240 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 119.99754 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.47265 * 89.99987 * 9 7 5 11 11 H 1.48505 * 109.47196 * 209.99826 * 9 7 5 12 12 H 1.48496 * 109.47396 * 329.99700 * 9 7 5 13 13 C 1.55154 * 110.72048 * 123.23704 * 2 1 3 14 14 C 1.54910 * 101.58031 * 82.86432 * 13 2 1 15 15 N 1.47426 * 104.83209 * 37.01037 * 14 13 2 16 16 C 1.34775 * 125.64777 * 155.89013 * 15 14 13 17 17 O 1.21276 * 120.00034 * 179.97438 * 16 15 14 18 18 C 1.50705 * 119.99931 * 359.97438 * 16 15 14 19 19 C 1.50699 * 109.47054 * 179.97438 * 18 16 15 20 20 N 1.34775 * 120.00218 * 179.97438 * 19 18 16 21 21 O 1.21288 * 120.00038 * 0.02562 * 19 18 16 22 22 C 1.47019 * 108.70209 * 335.87354 * 15 14 13 23 23 H 1.09006 * 109.46954 * 183.23768 * 1 2 3 24 24 H 1.09003 * 109.47651 * 303.23857 * 1 2 3 25 25 H 1.09005 * 109.47222 * 63.24254 * 1 2 3 26 26 H 1.08999 * 109.47664 * 176.75776 * 3 2 1 27 27 H 1.08998 * 109.47400 * 296.76113 * 3 2 1 28 28 H 0.97002 * 120.00094 * 359.97438 * 4 3 2 29 29 H 0.97002 * 119.99948 * 180.02562 * 8 7 5 30 30 H 1.09002 * 111.00945 * 324.79239 * 13 2 1 31 31 H 1.08999 * 111.00353 * 200.93777 * 13 2 1 32 32 H 1.08998 * 110.36709 * 278.17139 * 14 13 2 33 33 H 1.09005 * 110.36466 * 155.84673 * 14 13 2 34 34 H 1.09002 * 109.46910 * 299.99521 * 18 16 15 35 35 H 1.08995 * 109.47630 * 59.99841 * 18 16 15 36 36 H 0.96994 * 119.99604 * 359.97438 * 20 19 18 37 37 H 0.97003 * 120.00208 * 180.02562 * 20 19 18 38 38 H 1.09001 * 109.88389 * 120.48020 * 22 15 14 39 39 H 1.09003 * 109.87977 * 241.64361 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0727 1.4305 0.0000 4 7 1.5381 2.1557 1.1552 5 6 1.8870 3.4632 1.3643 6 1 2.5568 3.9598 0.6777 7 6 1.3801 4.1505 2.4586 8 7 1.7159 5.4071 2.6598 9 14 0.2212 3.2918 3.6457 10 1 1.0086 2.6488 4.7282 11 1 -0.7102 4.2869 4.2352 12 1 -0.5561 2.2571 2.9174 13 6 2.0789 -0.7954 1.2138 14 6 2.0126 -2.2509 0.6875 15 7 2.3716 -2.1531 -0.7390 16 6 2.8854 -3.1476 -1.4897 17 8 3.1437 -2.9536 -2.6586 18 6 3.1388 -4.5007 -0.8764 19 6 3.7101 -5.4260 -1.9197 20 7 4.0178 -6.6978 -1.5967 21 8 3.8939 -5.0259 -3.0498 22 6 2.0761 -0.7911 -1.2072 23 1 -0.3633 -1.0261 0.0580 24 1 -0.3634 0.5633 0.8595 25 1 -0.3634 0.4627 -0.9177 26 1 3.1609 1.4063 0.0581 27 1 1.7690 1.9344 -0.9176 28 1 0.9363 1.7098 1.7717 29 1 1.3619 5.8872 3.4247 30 1 1.4395 -0.6663 2.0871 31 1 3.1060 -0.5072 1.4375 32 1 1.0039 -2.6488 0.7984 33 1 2.7294 -2.8787 1.2169 34 1 3.8461 -4.3998 -0.0532 35 1 2.2012 -4.9111 -0.5015 36 1 3.8719 -7.0173 -0.6926 37 1 4.3859 -7.2933 -2.2681 38 1 2.9869 -0.3206 -1.5775 39 1 1.3263 -0.8255 -1.9977 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270697211.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:56 Heat of formation + Delta-G solvation = -56.629534 kcal Electronic energy + Delta-G solvation = -20858.798908 eV Core-core repulsion = 17608.787765 eV Total energy + Delta-G solvation = -3250.011142 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.57878 -39.40422 -37.72940 -35.01394 -33.93516 -32.78477 -31.02776 -30.29421 -29.52120 -26.79733 -25.63677 -23.20246 -22.18317 -21.32910 -19.37268 -18.98364 -17.84442 -17.50198 -17.35478 -16.47185 -15.94527 -15.60937 -14.92510 -14.56751 -14.14840 -14.09110 -13.86640 -13.63156 -13.38812 -13.01975 -12.59156 -12.44578 -12.29859 -12.21535 -11.84003 -11.66172 -11.41196 -10.92785 -10.64278 -10.47940 -10.40621 -10.33865 -10.07331 -9.95265 -9.59872 -9.53683 -8.92143 -8.63581 -7.24755 -5.78223 -3.13773 2.37521 2.64299 2.67847 3.32820 3.34504 3.38178 3.42187 4.16546 4.50341 4.56152 4.57386 4.72573 4.79915 4.91913 4.96497 5.18764 5.25284 5.36734 5.52789 5.54946 5.67086 5.82987 5.87763 5.92224 6.07014 6.17233 6.27124 6.29837 6.46493 6.47679 6.63834 6.70894 6.98446 7.46643 7.98375 7.99530 8.20508 8.40704 9.19698 9.91513 10.11516 11.40384 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.044120 B = 0.003689 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.474715 B = 7587.771223 C = 7825.603754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.083 4.083 3 C 0.173 3.827 4 N -0.752 5.752 5 C -0.243 4.243 6 H 0.090 0.910 7 C 0.004 3.996 8 N -0.934 5.934 9 Si 0.883 3.117 10 H -0.284 1.284 11 H -0.291 1.291 12 H -0.277 1.277 13 C -0.121 4.121 14 C 0.097 3.903 15 N -0.619 5.619 16 C 0.525 3.475 17 O -0.499 6.499 18 C -0.162 4.162 19 C 0.515 3.485 20 N -0.861 5.861 21 O -0.496 6.496 22 C 0.122 3.878 23 H 0.049 0.951 24 H 0.065 0.935 25 H 0.059 0.941 26 H 0.031 0.969 27 H 0.031 0.969 28 H 0.361 0.639 29 H 0.259 0.741 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.121 0.879 35 H 0.120 0.880 36 H 0.399 0.601 37 H 0.402 0.598 38 H 0.072 0.928 39 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.331 -25.089 -1.643 25.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.084 4.084 3 C 0.045 3.955 4 N -0.398 5.398 5 C -0.372 4.372 6 H 0.108 0.892 7 C -0.192 4.192 8 N -0.583 5.583 9 Si 0.714 3.286 10 H -0.211 1.211 11 H -0.217 1.217 12 H -0.204 1.204 13 C -0.159 4.159 14 C -0.026 4.026 15 N -0.355 5.355 16 C 0.311 3.689 17 O -0.371 6.371 18 C -0.205 4.205 19 C 0.297 3.703 20 N -0.427 5.427 21 O -0.367 6.367 22 C -0.001 4.001 23 H 0.068 0.932 24 H 0.084 0.916 25 H 0.078 0.922 26 H 0.049 0.951 27 H 0.049 0.951 28 H 0.194 0.806 29 H 0.069 0.931 30 H 0.103 0.897 31 H 0.101 0.899 32 H 0.087 0.913 33 H 0.092 0.908 34 H 0.139 0.861 35 H 0.138 0.862 36 H 0.227 0.773 37 H 0.233 0.767 38 H 0.090 0.910 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.666 -24.357 -3.099 24.562 hybrid contribution -0.821 -0.920 1.402 1.867 sum -0.155 -25.277 -1.697 25.335 Atomic orbital electron populations 1.21786 0.93442 1.00860 1.03039 1.21858 0.96356 0.96393 0.93748 1.20574 0.96121 0.87502 0.91265 1.42682 1.57178 1.11560 1.28400 1.19065 1.23697 0.86133 1.08349 0.89213 1.24666 1.00234 0.95801 0.98493 1.69700 1.48511 1.09138 1.30902 0.86571 0.81386 0.78862 0.81801 1.21082 1.21747 1.20353 1.22861 1.02931 0.92237 0.97827 1.22431 1.00202 0.98943 0.81037 1.48510 1.63708 1.11861 1.11410 1.19530 0.78365 0.84688 0.86335 1.90869 1.49336 1.81543 1.15389 1.21566 1.04733 0.94434 0.99798 1.20030 0.78449 0.82560 0.89268 1.43861 1.69446 1.13130 1.16303 1.90925 1.50208 1.74609 1.20989 1.21986 1.00729 0.80836 0.96523 0.93245 0.91585 0.92175 0.95128 0.95145 0.80553 0.93056 0.89746 0.89867 0.91307 0.90826 0.86078 0.86183 0.77316 0.76681 0.90958 0.91284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.83 8.28 37.15 0.31 -1.52 16 2 C -0.08 -1.17 0.61 -152.68 -0.09 -1.27 16 3 C 0.17 3.20 5.08 -4.04 -0.02 3.18 16 4 N -0.75 -17.00 4.96 -59.91 -0.30 -17.30 16 5 C -0.24 -6.73 10.47 -15.06 -0.16 -6.89 16 6 H 0.09 2.69 8.06 -52.48 -0.42 2.27 16 7 C 0.00 0.11 5.50 -17.43 -0.10 0.01 16 8 N -0.93 -29.12 13.97 55.49 0.78 -28.35 16 9 Si 0.88 21.41 27.73 -169.99 -4.71 16.69 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 12 H -0.28 -6.20 6.52 56.52 0.37 -5.83 16 13 C -0.12 -1.47 5.72 -24.58 -0.14 -1.61 16 14 C 0.10 0.89 6.37 -2.53 -0.02 0.88 16 15 N -0.62 -7.52 3.33 -170.52 -0.57 -8.09 16 16 C 0.52 7.00 7.84 -10.98 -0.09 6.91 16 17 O -0.50 -9.27 14.51 -18.96 -0.27 -9.55 16 18 C -0.16 -1.29 5.19 -29.03 -0.15 -1.44 16 19 C 0.51 5.29 8.09 -10.99 -0.09 5.20 16 20 N -0.86 -4.53 8.87 31.22 0.28 -4.25 16 21 O -0.50 -8.17 15.02 -18.97 -0.28 -8.46 16 22 C 0.12 1.69 6.04 -3.07 -0.02 1.67 16 23 H 0.05 0.57 7.41 -51.93 -0.38 0.18 16 24 H 0.07 1.02 6.69 -51.93 -0.35 0.67 16 25 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.03 0.59 8.10 -51.93 -0.42 0.16 16 27 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.36 7.82 4.08 -40.82 -0.17 7.66 16 29 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 30 H 0.08 1.01 8.04 -51.93 -0.42 0.60 16 31 H 0.08 1.08 8.02 -51.93 -0.42 0.67 16 32 H 0.07 0.54 7.69 -51.93 -0.40 0.14 16 33 H 0.07 0.48 7.48 -51.93 -0.39 0.10 16 34 H 0.12 0.60 7.85 -51.93 -0.41 0.20 16 35 H 0.12 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.40 0.65 8.83 -40.82 -0.36 0.29 16 37 H 0.40 1.91 8.93 -40.82 -0.36 1.54 16 38 H 0.07 1.08 7.82 -51.93 -0.41 0.68 16 39 H 0.07 0.97 7.84 -51.93 -0.41 0.57 16 LS Contribution 317.90 15.07 4.79 4.79 Total: -1.00 -38.03 317.90 -6.60 -44.63 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -5.75 Total: 4.76 kcal Atomic # 6 Polarization: 5.68 SS G_CDS: -0.56 Total: 5.12 kcal Atomic # 7 Polarization: -58.17 SS G_CDS: 0.19 Total: -57.99 kcal Atomic # 8 Polarization: -17.45 SS G_CDS: -0.56 Total: -18.01 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.71 Total: 16.69 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -38.03 -6.60 -44.63 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270697211.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.996 kcal (2) G-P(sol) polarization free energy of solvation -38.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds