Wall clock time and date at job start Mon Mar 30 2020 00:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 110.77964 * 2 1 4 4 N 1.46503 * 109.47129 * 56.76023 * 3 2 1 5 5 C 1.36938 * 120.00489 * 180.02562 * 4 3 2 6 6 H 1.08004 * 119.99361 * 359.97438 * 5 4 3 7 7 C 1.38804 * 120.00485 * 179.97438 * 5 4 3 8 8 N 1.31616 * 120.00240 * 179.97438 * 7 5 4 9 9 Si 1.86799 * 119.99754 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.47265 * 89.99987 * 9 7 5 11 11 H 1.48505 * 109.47196 * 209.99826 * 9 7 5 12 12 H 1.48496 * 109.47396 * 329.99700 * 9 7 5 13 13 C 1.55154 * 110.72048 * 123.23704 * 2 1 3 14 14 C 1.54910 * 101.58031 * 82.86432 * 13 2 1 15 15 N 1.47426 * 104.83209 * 37.01037 * 14 13 2 16 16 C 1.34775 * 125.64777 * 155.89013 * 15 14 13 17 17 O 1.21276 * 120.00034 * 179.97438 * 16 15 14 18 18 C 1.50705 * 119.99931 * 359.97438 * 16 15 14 19 19 C 1.50699 * 109.47054 * 179.97438 * 18 16 15 20 20 N 1.34775 * 120.00218 * 179.97438 * 19 18 16 21 21 O 1.21288 * 120.00038 * 0.02562 * 19 18 16 22 22 C 1.47019 * 108.70209 * 335.87354 * 15 14 13 23 23 H 1.09006 * 109.46954 * 183.23768 * 1 2 3 24 24 H 1.09003 * 109.47651 * 303.23857 * 1 2 3 25 25 H 1.09005 * 109.47222 * 63.24254 * 1 2 3 26 26 H 1.08999 * 109.47664 * 176.75776 * 3 2 1 27 27 H 1.08998 * 109.47400 * 296.76113 * 3 2 1 28 28 H 0.97002 * 120.00094 * 359.97438 * 4 3 2 29 29 H 0.97002 * 119.99948 * 180.02562 * 8 7 5 30 30 H 1.09002 * 111.00945 * 324.79239 * 13 2 1 31 31 H 1.08999 * 111.00353 * 200.93777 * 13 2 1 32 32 H 1.08998 * 110.36709 * 278.17139 * 14 13 2 33 33 H 1.09005 * 110.36466 * 155.84673 * 14 13 2 34 34 H 1.09002 * 109.46910 * 299.99521 * 18 16 15 35 35 H 1.08995 * 109.47630 * 59.99841 * 18 16 15 36 36 H 0.96994 * 119.99604 * 359.97438 * 20 19 18 37 37 H 0.97003 * 120.00208 * 180.02562 * 20 19 18 38 38 H 1.09001 * 109.88389 * 120.48020 * 22 15 14 39 39 H 1.09003 * 109.87977 * 241.64361 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0727 1.4305 0.0000 4 7 1.5381 2.1557 1.1552 5 6 1.8870 3.4632 1.3643 6 1 2.5568 3.9598 0.6777 7 6 1.3801 4.1505 2.4586 8 7 1.7159 5.4071 2.6598 9 14 0.2212 3.2918 3.6457 10 1 1.0086 2.6488 4.7282 11 1 -0.7102 4.2869 4.2352 12 1 -0.5561 2.2571 2.9174 13 6 2.0789 -0.7954 1.2138 14 6 2.0126 -2.2509 0.6875 15 7 2.3716 -2.1531 -0.7390 16 6 2.8854 -3.1476 -1.4897 17 8 3.1437 -2.9536 -2.6586 18 6 3.1388 -4.5007 -0.8764 19 6 3.7101 -5.4260 -1.9197 20 7 4.0178 -6.6978 -1.5967 21 8 3.8939 -5.0259 -3.0498 22 6 2.0761 -0.7911 -1.2072 23 1 -0.3633 -1.0261 0.0580 24 1 -0.3634 0.5633 0.8595 25 1 -0.3634 0.4627 -0.9177 26 1 3.1609 1.4063 0.0581 27 1 1.7690 1.9344 -0.9176 28 1 0.9363 1.7098 1.7717 29 1 1.3619 5.8872 3.4247 30 1 1.4395 -0.6663 2.0871 31 1 3.1060 -0.5072 1.4375 32 1 1.0039 -2.6488 0.7984 33 1 2.7294 -2.8787 1.2169 34 1 3.8461 -4.3998 -0.0532 35 1 2.2012 -4.9111 -0.5015 36 1 3.8719 -7.0173 -0.6926 37 1 4.3859 -7.2933 -2.2681 38 1 2.9869 -0.3206 -1.5775 39 1 1.3263 -0.8255 -1.9977 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270697211.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:56 Heat of formation + Delta-G solvation = -87.616976 kcal Electronic energy + Delta-G solvation = -20860.142624 eV Core-core repulsion = 17608.787765 eV Total energy + Delta-G solvation = -3251.354859 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.51781 -40.32109 -38.82133 -36.59419 -34.69275 -34.32001 -32.70509 -31.20623 -30.50984 -28.01631 -27.15749 -24.32895 -23.82760 -22.15268 -20.50178 -20.10379 -19.50584 -18.38229 -18.08883 -17.36635 -16.84897 -16.66167 -16.33076 -15.90632 -15.52291 -15.30936 -15.12223 -14.87924 -14.47814 -14.22236 -14.12716 -13.56808 -13.36215 -13.23576 -13.05840 -12.89234 -12.80141 -12.62832 -12.15450 -11.95875 -11.66461 -11.55347 -11.43422 -11.21539 -10.95929 -10.57031 -10.55459 -9.61630 -9.28541 -8.00749 -5.35026 1.38970 1.45191 1.52491 1.63743 1.75470 1.84004 2.51286 2.75110 3.27149 3.30634 3.54112 3.62364 3.79402 3.99292 4.16820 4.24614 4.28193 4.38202 4.43045 4.43825 4.69322 4.73123 4.80670 4.87978 4.98116 5.02942 5.10195 5.22133 5.28452 5.31739 5.47679 5.76755 5.97167 6.22430 6.50684 6.60273 7.09897 7.21457 7.49033 7.83708 8.07018 9.21197 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.044120 B = 0.003689 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.474715 B = 7587.771223 C = 7825.603754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.074 4.074 3 C 0.170 3.830 4 N -0.747 5.747 5 C -0.237 4.237 6 H 0.048 0.952 7 C -0.067 4.067 8 N -0.988 5.988 9 Si 0.959 3.041 10 H -0.271 1.271 11 H -0.299 1.299 12 H -0.243 1.243 13 C -0.123 4.123 14 C 0.101 3.899 15 N -0.616 5.616 16 C 0.515 3.485 17 O -0.564 6.564 18 C -0.149 4.149 19 C 0.507 3.493 20 N -0.835 5.835 21 O -0.571 6.571 22 C 0.125 3.875 23 H 0.080 0.920 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.020 0.980 27 H 0.016 0.984 28 H 0.370 0.630 29 H 0.258 0.742 30 H 0.095 0.905 31 H 0.070 0.930 32 H 0.098 0.902 33 H 0.114 0.886 34 H 0.162 0.838 35 H 0.165 0.835 36 H 0.421 0.579 37 H 0.406 0.594 38 H 0.049 0.951 39 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.143 -29.164 0.971 29.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.075 4.075 3 C 0.044 3.956 4 N -0.394 5.394 5 C -0.368 4.368 6 H 0.067 0.933 7 C -0.258 4.258 8 N -0.638 5.638 9 Si 0.785 3.215 10 H -0.197 1.197 11 H -0.226 1.226 12 H -0.168 1.168 13 C -0.161 4.161 14 C -0.020 4.020 15 N -0.351 5.351 16 C 0.303 3.697 17 O -0.441 6.441 18 C -0.191 4.191 19 C 0.291 3.709 20 N -0.401 5.401 21 O -0.449 6.449 22 C 0.001 3.999 23 H 0.099 0.901 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.038 0.962 27 H 0.034 0.966 28 H 0.205 0.795 29 H 0.067 0.933 30 H 0.113 0.887 31 H 0.089 0.911 32 H 0.116 0.884 33 H 0.132 0.868 34 H 0.179 0.821 35 H 0.183 0.817 36 H 0.253 0.747 37 H 0.237 0.763 38 H 0.067 0.933 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.813 -28.536 -0.425 28.551 hybrid contribution -0.266 0.382 0.521 0.698 sum -1.079 -28.154 0.096 28.175 Atomic orbital electron populations 1.21753 0.92409 1.02559 1.01985 1.21672 0.96960 0.93446 0.95431 1.20653 0.95575 0.90233 0.89170 1.42549 1.57290 1.09885 1.29631 1.19008 1.22379 0.88143 1.07295 0.93346 1.25593 1.02753 0.96566 1.00898 1.69910 1.50583 1.11404 1.31925 0.85367 0.78857 0.78171 0.79144 1.19713 1.22605 1.16750 1.22891 1.02184 0.93978 0.97037 1.22675 1.03111 0.97369 0.78822 1.48592 1.63095 1.10649 1.12775 1.20545 0.76978 0.86422 0.85732 1.90855 1.51961 1.82839 1.18467 1.21637 1.07752 0.90355 0.99333 1.20546 0.77734 0.83859 0.88735 1.43649 1.67323 1.11529 1.17600 1.90913 1.53674 1.76239 1.24065 1.21753 0.99483 0.82390 0.96274 0.90069 0.92883 0.93014 0.96156 0.96608 0.79463 0.93331 0.88693 0.91148 0.88436 0.86792 0.82050 0.81729 0.74709 0.76262 0.93300 0.91927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.20 8.28 71.98 0.60 -2.60 16 2 C -0.07 -1.99 0.61 -51.00 -0.03 -2.02 16 3 C 0.17 6.41 5.08 86.38 0.44 6.85 16 4 N -0.75 -33.51 4.96 -343.45 -1.70 -35.22 16 5 C -0.24 -13.51 10.47 84.03 0.88 -12.63 16 6 H 0.05 3.09 8.06 -2.91 -0.02 3.06 16 7 C -0.07 -3.91 5.50 84.86 0.47 -3.45 16 8 N -0.99 -63.40 13.97 21.65 0.30 -63.10 16 9 Si 0.96 43.48 27.73 68.60 1.90 45.38 16 10 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 11 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 12 H -0.24 -9.57 6.52 99.48 0.65 -8.92 16 13 C -0.12 -2.55 5.72 31.99 0.18 -2.37 16 14 C 0.10 1.32 6.37 86.86 0.55 1.87 16 15 N -0.62 -13.28 3.33 -811.79 -2.70 -15.98 16 16 C 0.51 12.70 7.84 87.66 0.69 13.39 16 17 O -0.56 -21.45 14.51 20.42 0.30 -21.15 16 18 C -0.15 -1.69 5.19 29.10 0.15 -1.54 16 19 C 0.51 9.29 8.09 87.66 0.71 10.00 16 20 N -0.84 -6.05 8.87 -173.53 -1.54 -7.59 16 21 O -0.57 -19.10 15.02 20.39 0.31 -18.79 16 22 C 0.12 3.40 6.04 86.73 0.52 3.92 16 23 H 0.08 1.50 7.41 -2.38 -0.02 1.48 16 24 H 0.05 1.46 6.69 -2.39 -0.02 1.44 16 25 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 26 H 0.02 0.81 8.10 -2.39 -0.02 0.79 16 27 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.37 15.21 4.08 -92.71 -0.38 14.83 16 29 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 30 H 0.09 1.82 8.04 -2.39 -0.02 1.80 16 31 H 0.07 1.66 8.02 -2.39 -0.02 1.64 16 32 H 0.10 0.83 7.69 -2.39 -0.02 0.81 16 33 H 0.11 0.66 7.48 -2.38 -0.02 0.65 16 34 H 0.16 0.57 7.85 -2.39 -0.02 0.55 16 35 H 0.17 0.44 8.14 -2.39 -0.02 0.42 16 36 H 0.42 -0.64 8.83 -92.71 -0.82 -1.46 16 37 H 0.41 2.90 8.93 -92.71 -0.83 2.07 16 38 H 0.05 1.54 7.82 -2.39 -0.02 1.52 16 39 H 0.06 1.77 7.84 -2.39 -0.02 1.75 16 Total: -1.00 -91.03 317.90 1.02 -90.01 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -1.00 Total: 15.04 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: 5.16 Total: 11.42 kcal Atomic # 7 Polarization: -116.25 SS G_CDS: -5.64 Total: -121.89 kcal Atomic # 8 Polarization: -40.55 SS G_CDS: 0.60 Total: -39.94 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 1.90 Total: 45.38 kcal Total: -91.03 1.02 -90.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270697211.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.392 kcal (2) G-P(sol) polarization free energy of solvation -91.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds