Wall clock time and date at job start Mon Mar 30 2020 01:39:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.69892 * 2 1 4 4 C 1.53194 * 109.58431 * 120.35143 * 2 1 3 5 5 H 1.08996 * 109.50065 * 54.47126 * 4 2 1 6 6 N 1.46502 * 109.50033 * 294.37556 * 4 2 1 7 7 C 1.34771 * 120.00171 * 155.00530 * 6 4 2 8 8 O 1.21284 * 120.00044 * 359.97438 * 7 6 4 9 9 C 1.50701 * 119.99881 * 180.02562 * 7 6 4 10 10 C 1.50705 * 109.46749 * 179.97438 * 9 7 6 11 11 N 1.34783 * 119.99420 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00434 * 359.97438 * 10 9 7 13 13 C 1.53048 * 109.31084 * 174.42474 * 4 2 1 14 14 C 1.53035 * 109.53690 * 298.63348 * 13 4 2 15 15 C 1.53197 * 109.31133 * 61.36803 * 14 13 4 16 16 N 1.46917 * 109.58848 * 239.64249 * 2 1 3 17 17 C 1.36936 * 120.63111 * 6.62431 * 16 2 1 18 18 H 1.08002 * 119.99906 * 331.54600 * 17 16 2 19 19 C 1.38820 * 119.99973 * 151.54351 * 17 16 2 20 20 N 1.31622 * 119.99869 * 160.53454 * 19 17 16 21 21 Si 1.86803 * 119.99832 * 340.53229 * 19 17 16 22 22 H 1.48495 * 109.46938 * 94.84410 * 21 19 17 23 23 H 1.48498 * 109.46531 * 214.84263 * 21 19 17 24 24 H 1.48498 * 109.47185 * 334.84005 * 21 19 17 25 25 H 1.09001 * 109.47331 * 180.35789 * 1 2 3 26 26 H 1.09000 * 109.47365 * 300.35944 * 1 2 3 27 27 H 1.08998 * 109.47416 * 60.35768 * 1 2 3 28 28 H 0.97004 * 119.99816 * 334.99907 * 6 4 2 29 29 H 1.08995 * 109.47174 * 299.98995 * 9 7 6 30 30 H 1.08999 * 109.47304 * 59.99749 * 9 7 6 31 31 H 0.96993 * 120.00552 * 359.97438 * 11 10 9 32 32 H 0.97004 * 119.99306 * 179.97438 * 11 10 9 33 33 H 1.08999 * 109.46148 * 58.65835 * 13 4 2 34 34 H 1.09003 * 109.45657 * 178.62837 * 13 4 2 35 35 H 1.09005 * 109.50047 * 301.41526 * 14 13 4 36 36 H 1.08999 * 109.50083 * 181.31681 * 14 13 4 37 37 H 1.09005 * 109.58416 * 185.58067 * 15 14 13 38 38 H 1.08996 * 109.58528 * 65.15169 * 15 14 13 39 39 H 0.96997 * 119.99773 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0435 -0.7293 1.2455 5 1 1.6029 -1.7252 1.2915 6 7 1.6704 0.0268 2.4436 7 6 1.5472 -0.6047 3.6278 8 8 1.7446 -1.7991 3.7016 9 6 1.1628 0.1731 4.8600 10 6 1.0933 -0.7599 6.0415 11 7 0.7660 -0.2826 7.2587 12 8 1.3318 -1.9403 5.8970 13 6 3.5675 -0.8479 1.1703 14 6 3.9569 -1.6657 -0.0632 15 6 3.4651 -0.9469 -1.3236 16 7 2.0225 -0.6995 -1.1944 17 6 1.1538 -1.1128 -2.1688 18 1 0.1334 -1.3583 -1.9139 19 6 1.5846 -1.2160 -3.4845 20 7 0.9111 -1.9539 -4.3415 21 14 3.1200 -0.3077 -4.0385 22 1 4.2909 -1.2169 -3.9529 23 1 2.9472 0.1461 -5.4418 24 1 3.3422 0.8697 -3.1613 25 1 -0.3634 -1.0276 0.0064 26 1 -0.3634 0.5194 0.8867 27 1 -0.3634 0.5082 -0.8931 28 1 1.5122 0.9820 2.3845 29 1 1.9086 0.9450 5.0498 30 1 0.1891 0.6383 4.7071 31 1 0.5756 0.6614 7.3744 32 1 0.7208 -0.8832 8.0191 33 1 4.0061 0.1475 1.0995 34 1 3.9377 -1.3449 2.0670 35 1 3.4983 -2.6528 -0.0050 36 1 5.0412 -1.7696 -0.1035 37 1 3.6519 -1.5718 -2.1970 38 1 3.9904 0.0020 -1.4315 39 1 1.2119 -2.0258 -5.2608 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278506428.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:20 Heat of formation + Delta-G solvation = -51.364280 kcal Electronic energy + Delta-G solvation = -21440.859550 eV Core-core repulsion = 18191.076726 eV Total energy + Delta-G solvation = -3249.782824 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 269.153 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.27165 -38.96675 -37.57456 -34.37949 -33.79155 -32.74750 -31.78702 -30.85653 -29.32930 -26.33712 -24.87363 -22.94830 -21.29543 -20.82231 -20.10144 -19.47482 -17.65879 -17.32041 -16.44815 -16.05626 -15.90006 -15.63890 -15.05976 -14.36944 -14.27632 -13.68156 -13.59534 -13.48898 -13.36344 -13.18203 -12.40437 -12.19652 -11.91037 -11.81267 -11.32904 -11.25779 -10.88624 -10.64918 -10.40029 -10.32184 -10.22773 -9.92764 -9.84669 -9.61352 -9.42297 -9.31238 -8.74301 -8.56992 -6.96615 -5.92822 -3.31089 2.50799 2.87181 2.97514 3.34004 3.48876 3.51239 3.63282 4.48662 4.54319 4.80707 4.93335 4.99048 5.10017 5.26870 5.40760 5.48353 5.59357 5.75478 5.91334 6.03864 6.21885 6.25666 6.30500 6.45472 6.49634 6.53895 6.57900 6.66726 6.73612 6.83916 6.97125 7.06895 7.09915 7.72474 7.96952 8.13763 8.35817 8.50294 8.94101 9.73246 10.09234 11.22582 Molecular weight = 269.15amu Principal moments of inertia in cm(-1) A = 0.039731 B = 0.004496 C = 0.004333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.562881 B = 6226.952462 C = 6460.265180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.172 3.828 3 H 0.032 0.968 4 C 0.131 3.869 5 H 0.090 0.910 6 N -0.723 5.723 7 C 0.508 3.492 8 O -0.497 6.497 9 C -0.168 4.168 10 C 0.514 3.486 11 N -0.863 5.863 12 O -0.494 6.494 13 C -0.118 4.118 14 C -0.133 4.133 15 C 0.124 3.876 16 N -0.597 5.597 17 C -0.261 4.261 18 H 0.092 0.908 19 C 0.025 3.975 20 N -0.908 5.908 21 Si 0.882 3.118 22 H -0.289 1.289 23 H -0.304 1.304 24 H -0.270 1.270 25 H 0.058 0.942 26 H 0.040 0.960 27 H 0.066 0.934 28 H 0.394 0.606 29 H 0.119 0.881 30 H 0.121 0.879 31 H 0.398 0.602 32 H 0.401 0.599 33 H 0.054 0.946 34 H 0.056 0.944 35 H 0.067 0.933 36 H 0.056 0.944 37 H 0.073 0.927 38 H 0.026 0.974 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.157 10.438 19.461 22.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.064 3.936 3 H 0.050 0.950 4 C 0.026 3.974 5 H 0.108 0.892 6 N -0.375 5.375 7 C 0.291 3.709 8 O -0.369 6.369 9 C -0.211 4.211 10 C 0.296 3.704 11 N -0.429 5.429 12 O -0.365 6.365 13 C -0.157 4.157 14 C -0.173 4.173 15 C -0.001 4.001 16 N -0.322 5.322 17 C -0.389 4.389 18 H 0.110 0.890 19 C -0.174 4.174 20 N -0.551 5.551 21 Si 0.713 3.287 22 H -0.217 1.217 23 H -0.233 1.233 24 H -0.195 1.195 25 H 0.078 0.922 26 H 0.059 0.941 27 H 0.085 0.915 28 H 0.228 0.772 29 H 0.137 0.863 30 H 0.139 0.861 31 H 0.226 0.774 32 H 0.232 0.768 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.091 0.909 38 H 0.044 0.956 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.450 8.708 19.008 20.958 hybrid contribution 0.729 1.348 -0.050 1.533 sum 2.179 10.056 18.958 21.570 Atomic orbital electron populations 1.21823 0.94892 1.02263 1.00415 1.20566 0.93900 0.93292 0.85801 0.95043 1.21717 0.94795 0.97235 0.83688 0.89184 1.46058 1.71274 1.11954 1.08225 1.19867 0.78707 0.88285 0.84069 1.90870 1.47285 1.14168 1.84623 1.21613 1.05897 0.99881 0.93707 1.20066 0.77112 0.89097 0.84121 1.43886 1.74923 1.13576 1.10539 1.90930 1.45402 1.16329 1.83858 1.21772 0.95767 0.99894 0.98263 1.22006 0.99521 1.00136 0.95614 1.21401 0.85054 0.97116 0.96552 1.44340 1.02164 1.65879 1.19791 1.18928 0.95500 1.38665 0.85793 0.89028 1.25278 0.97597 0.98711 0.95778 1.69825 1.41258 1.39155 1.04893 0.86947 0.83507 0.81273 0.76984 1.21688 1.23280 1.19486 0.92243 0.94098 0.91491 0.77223 0.86276 0.86146 0.77411 0.76810 0.92693 0.92535 0.91462 0.92551 0.90916 0.95583 0.92780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 7.82 37.16 0.29 -2.14 16 2 C 0.17 3.22 3.03 -67.60 -0.21 3.02 16 3 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 4 C 0.13 2.26 2.00 -67.80 -0.14 2.12 16 5 H 0.09 1.87 7.58 -51.93 -0.39 1.47 16 6 N -0.72 -9.41 4.59 -53.69 -0.25 -9.66 16 7 C 0.51 7.19 7.79 -10.99 -0.09 7.11 16 8 O -0.50 -9.93 13.84 -18.96 -0.26 -10.20 16 9 C -0.17 -1.41 6.19 -29.03 -0.18 -1.59 16 10 C 0.51 5.72 8.09 -10.98 -0.09 5.63 16 11 N -0.86 -5.19 8.87 31.22 0.28 -4.92 16 12 O -0.49 -8.69 15.02 -18.96 -0.28 -8.97 16 13 C -0.12 -2.00 5.46 -26.69 -0.15 -2.14 16 14 C -0.13 -2.48 6.08 -26.61 -0.16 -2.64 16 15 C 0.12 2.70 4.19 -3.71 -0.02 2.69 16 16 N -0.60 -13.87 2.76 -164.77 -0.45 -14.33 16 17 C -0.26 -7.10 9.06 -15.06 -0.14 -7.24 16 18 H 0.09 2.64 6.37 -52.49 -0.33 2.30 16 19 C 0.03 0.72 5.24 -17.43 -0.09 0.63 16 20 N -0.91 -27.72 13.97 55.49 0.78 -26.95 16 21 Si 0.88 22.18 24.35 -169.99 -4.14 18.04 16 22 H -0.29 -7.10 6.72 56.52 0.38 -6.72 16 23 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 24 H -0.27 -6.58 6.44 56.52 0.36 -6.22 16 25 H 0.06 1.17 7.45 -51.93 -0.39 0.79 16 26 H 0.04 0.57 7.80 -51.93 -0.41 0.17 16 27 H 0.07 1.28 7.61 -51.93 -0.40 0.89 16 28 H 0.39 3.74 8.61 -40.82 -0.35 3.39 16 29 H 0.12 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.12 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.40 0.90 8.83 -40.82 -0.36 0.54 16 32 H 0.40 2.23 8.93 -40.82 -0.36 1.87 16 33 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 36 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.07 1.74 4.61 -51.93 -0.24 1.50 16 38 H 0.03 0.56 6.95 -51.93 -0.36 0.20 16 39 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 308.66 15.07 4.65 4.65 Total: -1.00 -37.56 308.66 -6.38 -43.94 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -5.74 Total: 2.95 kcal Atomic # 6 Polarization: 6.39 SS G_CDS: -0.95 Total: 5.44 kcal Atomic # 7 Polarization: -56.20 SS G_CDS: 0.35 Total: -55.85 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -0.55 Total: -19.17 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.14 Total: 18.04 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -37.56 -6.38 -43.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278506428.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.426 kcal (2) G-P(sol) polarization free energy of solvation -37.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds